Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034646.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 606

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034646.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 523 bp

gacccggtgccttcttcaaaatatttgttgaaaatcagaaaccgaacattacagacgtggtcaccaagctcactgagtctcggtccgagtccaagcctcgacttgccgggtttgtcattgacatgttctgcaccaccatgatcaacgtggccaatgaatttggggttcctacttacgcctttttcacgtccaacgcagcgtctcttgggttcttgttacacttccaagccatttgtgatgaggaaaacaaggacgtttctgagttcttggagtcgggagccgatctgtctctgccgagttttatcaatccgctgcctcatggagttttgactggtgctcttctagacaaggagggcgccaatgcatttctcaatcatgcaagaaggtttagagaaaccaagggtattttggtaaacaagttcttggagttggagtcgcatgctttcactactacaaaaaggtcatcagacgacggtgaatttgtgttgtgtgatgaccaagctcaccgtggtctaagtgagtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

173

Amino Acids

19.14

Weight (kDa)

5.11

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	7, 355
AciI	CCGC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	157, 478
AcyI	GRCGYC	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	18, 31
AjiI	CACGTC	2 cut(s)	57, 188
AluBI	AGCT	2 cut(s)	69, 502
AluI	AGCT	2 cut(s)	69, 502
Alw21I	GWGCWC	1 cut(s)	339
Alw26I	GTCTC	3 cut(s)	83, 206, 293
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	196, 312
ApoI	RAATTY	2 cut(s)	157, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	83
AsuC2I	CCSGG	2 cut(s)	5, 108
AsuHPI	GGTGA	3 cut(s)	54, 487, 496
AvaII	GGWCC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	151
BanI	GGYRCC	2 cut(s)	7, 355
Bbv12I	GWGCWC	1 cut(s)	339
BbvI	GCAGC	2 cut(s)	208, 299
BclI	TGATCA	1 cut(s)	140
BcnI	CCSGG	2 cut(s)	5, 108
BcoDI	GTCTC	3 cut(s)	83, 206, 293
BfaI	CTAG	1 cut(s)	343
BfoI	RGCGCY	1 cut(s)	359
BisI	GCNGC	2 cut(s)	197, 313
BlsI	GCNGC	2 cut(s)	198, 314
Bme1390I	CCNGG	2 cut(s)	5, 108
Bme18I	GGWCC	1 cut(s)	83
BmgBI	CACGTC	2 cut(s)	57, 188
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	4 cut(s)	9, 167, 279, 357
BmrFI	CCNGG	2 cut(s)	5, 108
BpuMI	CCSGG	2 cut(s)	5, 108
BsaHI	GRCGYC	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	398, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bse1I	ACTGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	398, 507
BseMII	CTCAG	2 cut(s)	65, 251
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	208, 299
BsgI	GTGCAG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	151
BshNI	GGYRCC	2 cut(s)	7, 355
BsiHKAI	GWGCWC	1 cut(s)	339
BsiSI	CCGG	2 cut(s)	5, 107
BsmAI	GTCTC	3 cut(s)	83, 206, 293
BsmBI	CGTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	339
Bsp143I	GATC	2 cut(s)	140, 282
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	2 cut(s)	66, 252
BspLI	GGNNCC	4 cut(s)	9, 167, 279, 357
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	2 cut(s)	7, 355
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	2 cut(s)	398, 507
BssMI	GATC	2 cut(s)	140, 282
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	475, 508
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	440
BstDEI	CTNAG	3 cut(s)	74, 260, 514
BstDSI	CCRYGG	1 cut(s)	507
BstEII	GGTNACC	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	143, 285
BstMAI	GTCTC	3 cut(s)	83, 206, 293
BstMBI	GATC	2 cut(s)	140, 282
BstNSI	RCATGY	2 cut(s)	126, 442
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	2 cut(s)	3, 106
BstV1I	GCAGC	2 cut(s)	208, 299
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	507
BtrI	CACGTC	2 cut(s)	57, 188
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	440
CfoI	GCGC	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	83
CpoI	CGGWCCG	1 cut(s)	83
CseI	GACGC	1 cut(s)	188
CspI	CGGWCCG	1 cut(s)	83
CviAII	CATG	5 cut(s)	123, 138, 319, 376, 439
CviJI	RGCY	6 cut(s)	69, 96, 151, 229, 280, 502
CviKI_1	RGCY	6 cut(s)	69, 96, 151, 229, 280, 502
DdeI	CTNAG	3 cut(s)	74, 260, 514
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	2 cut(s)	142, 284
DpnII	GATC	2 cut(s)	140, 282
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	398
EcoT22I	ATGCAT	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	5 cut(s)	126, 141, 322, 379, 442
FaiI	YATR	5 cut(s)	124, 139, 320, 377, 440
FatI	CATG	5 cut(s)	122, 137, 318, 375, 438
FbaI	TGATCA	1 cut(s)	140
Fnu4HI	GCNGC	2 cut(s)	197, 313
Fsp4HI	GCNGC	2 cut(s)	197, 313
FspBI	CTAG	1 cut(s)	343
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	2 cut(s)	197, 313
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	2 cut(s)	5, 107
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	126, 141, 322, 379, 442
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HinfI	GANTC	4 cut(s)	76, 88, 271, 433
HpaII	CCGG	2 cut(s)	5, 107
HphI	GGTGA	3 cut(s)	54, 487, 496
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	4 cut(s)	38, 87, 261, 468
Hpy188III	TCNNGA	2 cut(s)	275, 343
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	21, 377
HpyCH4III	ACNGT	2 cut(s)	475, 508
HpyCH4IV	ACGT	4 cut(s)	56, 146, 187, 254
HpyCH4V	TGCA	3 cut(s)	131, 364, 379
HpyF3I	CTNAG	3 cut(s)	74, 260, 514
HpySE526I	ACGT	4 cut(s)	56, 146, 187, 254
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	5 cut(s)	126, 141, 322, 379, 442
HspAI	GCGC	1 cut(s)	356
KasI	GGCGCC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	140, 282
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	18, 120, 317
Lsp1109I	GCAGC	2 cut(s)	208, 299
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	4 cut(s)	56, 146, 187, 254
MaeIII	GTNAC	2 cut(s)	60, 215
MalI	GATC	2 cut(s)	142, 284
MboI	GATC	2 cut(s)	140, 282
MboII	GAAGA	2 cut(s)	6, 331
MhlI	GDGCHC	1 cut(s)	339
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	2 cut(s)	157, 478
MluNI	TGGCCA	1 cut(s)	151
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	4 cut(s)	85, 97, 280, 442
MmeI	TCCRAC	2 cut(s)	215, 410
MnlI	CCTC	4 cut(s)	107, 234, 326, 345
Mox20I	TGGCCA	1 cut(s)	151
Mph1103I	ATGCAT	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	151
MslI	CAYNNNNRTG	2 cut(s)	121, 136
Msp20I	TGGCCA	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	2 cut(s)	5, 107
MspR9I	CCNGG	2 cut(s)	5, 108
NarI	GGCGCC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	5, 108
NdeII	GATC	2 cut(s)	140, 282
NlaIII	CATG	5 cut(s)	126, 141, 322, 379, 442
NlaIV	GGNNCC	4 cut(s)	9, 167, 279, 357
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	2 cut(s)	126, 442
PaeI	GCATGC	1 cut(s)	442
PciI	ACATGT	1 cut(s)	122
PciSI	GCTCTTC	1 cut(s)	344
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	198, 314
PleI	GAGTC	4 cut(s)	84, 96, 279, 441
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	4 cut(s)	84, 96, 279, 441
PscI	ACATGT	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	9, 167, 279, 357
PspPI	GGNCC	1 cut(s)	83
PsyI	GACNNNGTC	1 cut(s)	58
RseI	CAYNNNNRTG	2 cut(s)	121, 136
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	344
SatI	GCNGC	2 cut(s)	197, 313
Sau3AI	GATC	2 cut(s)	140, 282
Sau96I	GGNCC	1 cut(s)	83
SchI	GAGTC	4 cut(s)	85, 97, 280, 442
ScrFI	CCNGG	2 cut(s)	5, 108
SduI	GDGCHC	1 cut(s)	339
SetI	ASST	8 cut(s)	59, 71, 149, 190, 257, 388, 463, 504
SfoI	GGCGCC	1 cut(s)	357
SinI	GGWCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	2 cut(s)	121, 136
SphI	GCATGC	1 cut(s)	442
Sse9I	AATT	2 cut(s)	157, 478
SsiI	CCGC	1 cut(s)	310
SspDI	GGCGCC	1 cut(s)	355
SspI	AATATT	1 cut(s)	23
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	3, 106
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	2 cut(s)	475, 508
TaiI	ACGT	4 cut(s)	59, 149, 190, 257
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	157, 478
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	60
TseI	GCWGC	2 cut(s)	196, 312
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	2 cut(s)	157, 478
XbaI	TCTAGA	1 cut(s)	342
XceI	RCATGY	2 cut(s)	126, 442
XcmI	CCANNNNNNNNNTGG	3 cut(s)	144, 405, 505
XspI	CTAG	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.