Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

16387261 .. 16389075

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGTACGCAGAACAACAAATGAATGCATTTGAAATGGTGAGAGAATGGGGATTGGCCGTGAAAATCAGCGTGGAGTATGGCAGTGTGTTTCATAGTACTGCCGAAGAGAGGCAACTGATTTTGATTGCACAAGAGATAGAGAGAGGAATAAGGGAGGTGATGGAGCCTGATAGTACTGTAAGAAAGAGAGTGAAAGAGATGAGTGAAATGAGTAAGAGAGCATTGATGGATGGTGGTTCTTCCTCCTCTTCATTGGGACGTTTTATTGATGAGATATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

94

Amino Acids

10.78

Weight (kDa)

5.02

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	54
AfaI	GTAC	3 cut(s)	5, 97, 175
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	1 cut(s)	32
AoxI	GGCC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	49, 169
BccI	CCATC	3 cut(s)	154, 220, 224
BceAI	ACGGC	1 cut(s)	41
BmcAI	AGTACT	2 cut(s)	97, 175
BmiI	GGNNCC	1 cut(s)	165
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	2 cut(s)	99, 253
BstF5I	GGATG	1 cut(s)	235
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	4, 96, 174
CviJI	RGCY	2 cut(s)	56, 166
CviKI_1	RGCY	2 cut(s)	56, 166
CviQI	GTAC	3 cut(s)	4, 96, 174
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	99, 253
EarI	CTCTTC	2 cut(s)	99, 253
EcoT22I	ATGCAT	1 cut(s)	28
FaiI	YATR	2 cut(s)	78, 93
FaqI	GGGAC	1 cut(s)	270
FokI	GGATG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	56
HphI	GGTGA	2 cut(s)	49, 169
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	1 cut(s)	259
HpyCH4V	TGCA	2 cut(s)	26, 128
HpySE526I	ACGT	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	259
MboII	GAAGA	3 cut(s)	116, 231, 240
MnlI	CCTC	5 cut(s)	102, 137, 148, 253, 256
Mph1103I	ATGCAT	1 cut(s)	28
Mva1269I	GAATGC	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	3 cut(s)	5, 97, 175
RsaNI	GTAC	3 cut(s)	4, 96, 174
ScaI	AGTACT	2 cut(s)	97, 175
SetI	ASST	2 cut(s)	159, 262
SgeI	CNNG	4 cut(s)	70, 82, 143, 179
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	1 cut(s)	262
TatI	WGTACW	2 cut(s)	95, 173
TscAI	CASTG	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	35, 80, 240
TspRI	CASTG	1 cut(s)	88
ZrmI	AGTACT	2 cut(s)	97, 175
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.