RchiOBHm_Chr2g0153381

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
70710406 .. 70713126
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52246

Sequence Viewer

Length: 444 bp
ATGCGGATTACAGTACAATCTTACCTAGAAGGGCTTCTCGATCGAACGATTGAGATTGGGAAGGTCATAGGGTGGGCCCCACAAGTAGCCATCTTAGCCCATTCGGCGGTCGGAGAATTTGTGTCTCATTGCGGGTGGTACTCTATACTGGAAAGTATTTGGGACGGTGTGCCGATTGCCACTTGGCCGTTTTATGCCGAGCAACAAGTGAATGCCTTTGAGCTGGTGAAGGAATTGAAATTGGCTATTGAGATCGATATAGGTTATAGAAAGGACTGTGGGGTGATTGTGAGTAGGCAAGACATAGGGAAAGGGATAAAGGAGGTAATGGAGCAAGAGAGCAAGAGGATGAAAGAAATGAGTCAAATGAGCAAGAAAACTTTGGAGGATGATGGTTCCTCATACTCATCATTAGGGCGTTTTATTGATCAAATTCAAAGCTAG

Protein Analysis

147

Amino Acids

16.59

Weight (kDa)

5.07

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 21 - 117 1.6e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 4, 107, 132
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 2 cut(s) 116, 432
AfaI GTAC 2 cut(s) 15, 140
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 238, 437
AluBI AGCT 2 cut(s) 223, 441
AluI AGCT 2 cut(s) 223, 441
Alw26I GTCTC 1 cut(s) 129
AoxI GGCC 2 cut(s) 75, 185
ApaI GGGCCC 1 cut(s) 79
ApoI RAATTY 2 cut(s) 116, 432
Asp700I GAANNNNTTC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 75, 76
AsuHPI GGTGA 2 cut(s) 238, 295
BaeGI GKGCMC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 79
BccI CCATC 2 cut(s) 98, 386
BceAI ACGGC 1 cut(s) 172
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 129
BfaI CTAG 2 cut(s) 26, 442
BglI GCCNNNNNGGC 1 cut(s) 104
BmgT120I GGNCC 2 cut(s) 75, 76
BmiI GGNNCC 3 cut(s) 77, 78, 397
Bsa29I ATCGAT 1 cut(s) 255
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 127
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 2 cut(s) 354, 394
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 153
BseSI GKGCMC 1 cut(s) 79
Bsh1285I CGRYCG 2 cut(s) 43, 111
BshFI GGCC 2 cut(s) 77, 187
BshVI ATCGAT 1 cut(s) 255
BsiEI CGRYCG 2 cut(s) 43, 111
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 77, 187
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 3 cut(s) 40, 252, 427
BspACI CCGC 3 cut(s) 4, 107, 132
BspANI GGCC 2 cut(s) 77, 187
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 3 cut(s) 77, 78, 397
BsrDI GCAATG 1 cut(s) 127
BsrI ACTGG 1 cut(s) 153
BssMI GATC 3 cut(s) 40, 252, 427
Bst4CI ACNGT 3 cut(s) 13, 167, 278
BstDEI CTNAG 1 cut(s) 94
BstF5I GGATG 2 cut(s) 354, 394
BstKTI GATC 3 cut(s) 43, 255, 430
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 3 cut(s) 40, 252, 427
BstMCI CGRYCG 2 cut(s) 43, 111
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstSLI GKGCMC 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 255
BsuRI GGCC 2 cut(s) 77, 187
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 2 cut(s) 354, 394
Cfr13I GGNCC 2 cut(s) 75, 76
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 14, 139
CviJI RGCY 8 cut(s) 34, 77, 89, 98, 187, 223, 245, 441
CviKI_1 RGCY 8 cut(s) 34, 77, 89, 98, 187, 223, 245, 441
CviQI GTAC 2 cut(s) 14, 139
DdeI CTNAG 1 cut(s) 94
DpnI GATC 3 cut(s) 42, 254, 429
DpnII GATC 3 cut(s) 40, 252, 427
EaeI YGGCCR 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 79
FaiI YATR 7 cut(s) 68, 146, 195, 260, 267, 305, 403
FaqI GGGAC 1 cut(s) 176
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 1 cut(s) 427
FokI GGATG 2 cut(s) 361, 401
FriOI GRGCYC 1 cut(s) 79
FspBI CTAG 2 cut(s) 26, 442
HaeIII GGCC 2 cut(s) 77, 187
HinfI GANTC 1 cut(s) 361
HphI GGTGA 2 cut(s) 238, 295
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 23, 55, 223
HpyCH4III ACNGT 3 cut(s) 13, 167, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 3 cut(s) 40, 252, 427
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 2 cut(s) 134, 209
MaeI CTAG 2 cut(s) 26, 442
MalI GATC 3 cut(s) 42, 254, 429
MboI GATC 3 cut(s) 40, 252, 427
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 116, 233, 239, 432
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 4 cut(s) 316, 339, 379, 409
MroXI GAANNNNTTC 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NdeII GATC 3 cut(s) 40, 252, 427
NlaIV GGNNCC 3 cut(s) 77, 78, 397
NmeAIII GCCGAG 1 cut(s) 223
PctI GAATGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 33
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 77, 78, 397
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 75, 76
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 2 cut(s) 15, 140
RsaNI GTAC 2 cut(s) 14, 139
Sau3AI GATC 3 cut(s) 40, 252, 427
Sau96I GGNCC 2 cut(s) 75, 76
SchI GAGTC 1 cut(s) 370
SduI GDGCHC 1 cut(s) 79
SetI ASST 6 cut(s) 27, 66, 225, 265, 327, 443
Sse9I AATT 4 cut(s) 116, 233, 239, 432
SsiI CCGC 3 cut(s) 4, 107, 132
SspMI CTAG 2 cut(s) 26, 442
TaaI ACNGT 3 cut(s) 13, 167, 278
TaqI TCGA 3 cut(s) 39, 43, 255
TasI AATT 4 cut(s) 116, 233, 239, 432
TatI WGTACW 1 cut(s) 13
TspDTI ATGAA 1 cut(s) 365
XapI RAATTY 2 cut(s) 116, 432
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 26, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.