Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

70657920 .. 70658843

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACCCGCAGCAACTTCCGCAAATCGTTCTTTGAAAGCCACAAACCCTACGTCAGAGATGCCGTCACCGAACTACTCGCCGGCTCGTCCGAGTCATCAACCCCTGGACTCGCCGGGTTCGTCATCGACATGTTCTGCACCACCATGATCGACGTGGCCAACGAGTTTGGGGTTCCTACCTACATATTCTTCACCTCCAACGCTGGCTTTCTAGGACTCGTGTTCCACCTCCAGATGATCCACGACGAGCATGACGTGGACATCGCCGACTTGAAAGACTCCGATTCTGAGTTGGTCCTCCCGAGTTTTGTTAATCCGGTACCTATCAAAGCCCTGCCGAGTATACTTTTGGAGAAAGAGGAGGCAATCCCATTCTTAAACTACGCAAGAAGGTTCAGAGAGACCAAGGGCATTTTGATAAATACCTTCTCAGATCTGGAACCGCATGCCCTTCGTTCTCTTGATTCTTATGGGAAGATCCCCCGGTATATCCGGTGGGACCACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

169

Amino Acids

19.22

Weight (kDa)

5.29

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccI	GTMKAC	1 cut(s)	343
AciI	CCGC	3 cut(s)	7, 19, 443
AclWI	GGATC	2 cut(s)	232, 472
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	35, 274
AjiI	CACGTC	2 cut(s)	154, 256
AjnI	CCWGG	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	232, 472
Ama87I	CYCGRG	1 cut(s)	301
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	9
ArsI	GACNNNNNNTTYG	2 cut(s)	36, 68
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	2 cut(s)	295, 499
AsuC2I	CCSGG	2 cut(s)	115, 484
AsuHPI	GGTGA	2 cut(s)	58, 184
AvaI	CYCGRG	1 cut(s)	301
AvaII	GGWCC	2 cut(s)	295, 499
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	319
BauI	CACGAG	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	2 cut(s)	115, 484
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	11
Bme1390I	CCNGG	3 cut(s)	105, 115, 484
Bme18I	GGWCC	2 cut(s)	295, 499
BmeT110I	CYCGRG	1 cut(s)	301
BmgBI	CACGTC	2 cut(s)	154, 256
BmgT120I	GGNCC	2 cut(s)	295, 499
BmiI	GGNNCC	4 cut(s)	174, 321, 441, 500
BmrFI	CCNGG	3 cut(s)	105, 115, 484
BmsI	GCATC	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	215
BpuMI	CCSGG	2 cut(s)	115, 484
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	103, 405, 482
BsaWI	WCCGGW	2 cut(s)	316, 492
Bse118I	RCCGGY	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	103, 405, 482
BseMII	CTCAG	2 cut(s)	279, 444
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	21
BsgI	GTGCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	301
BsiSI	CCGG	5 cut(s)	81, 114, 317, 484, 493
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	301
Bsp143I	GATC	4 cut(s)	147, 237, 433, 477
BspACI	CCGC	3 cut(s)	7, 19, 443
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	280, 443
BspLI	GGNNCC	4 cut(s)	174, 321, 441, 500
BspPI	GGATC	2 cut(s)	232, 472
BspT107I	GGYRCC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	103, 405, 482
BssMI	GATC	4 cut(s)	147, 237, 433, 477
BssNAI	GTATAC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	82, 205, 447
BstDEI	CTNAG	2 cut(s)	288, 430
BstKTI	GATC	4 cut(s)	150, 240, 436, 480
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	147, 237, 433, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	2 cut(s)	133, 449
BstSCI	CCNGG	3 cut(s)	103, 113, 482
BstV1I	GCAGC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	433, 477
BstYI	RGATCY	2 cut(s)	433, 477
BstZ17I	GTATAC	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	247
BtrI	CACGTC	2 cut(s)	154, 256
Cac8I	GCNNGC	3 cut(s)	82, 205, 447
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	295, 499
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	4 cut(s)	130, 145, 251, 446
CviJI	RGCY	5 cut(s)	39, 84, 158, 207, 332
CviKI_1	RGCY	5 cut(s)	39, 84, 158, 207, 332
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	288, 430
DpnI	GATC	4 cut(s)	149, 239, 435, 479
DpnII	GATC	4 cut(s)	147, 237, 433, 477
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	295, 499
Eco88I	CYCGRG	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	4 cut(s)	133, 148, 254, 449
FaiI	YATR	8 cut(s)	131, 146, 185, 252, 344, 447, 471, 489
FatI	CATG	4 cut(s)	129, 144, 250, 445
FauI	CCCGC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	343
Fnu4HI	GCNGC	1 cut(s)	10
Fsp4HI	GCNGC	1 cut(s)	10
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	10
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	5 cut(s)	81, 114, 317, 484, 493
Hin1II	CATG	4 cut(s)	133, 148, 254, 449
HinfI	GANTC	6 cut(s)	92, 108, 216, 278, 284, 464
HpaII	CCGG	5 cut(s)	81, 114, 317, 484, 493
HphI	GGTGA	2 cut(s)	58, 184
Hpy166II	GTNNAC	2 cut(s)	259, 344
Hpy188I	TCNGA	6 cut(s)	56, 91, 283, 289, 398, 433
Hpy188III	TCNNGA	4 cut(s)	232, 301, 437, 461
Hpy8I	GTNNAC	2 cut(s)	259, 344
Hpy99I	CGWCG	2 cut(s)	155, 248
HpyAV	CCTTC	3 cut(s)	384, 436, 461
HpyCH4IV	ACGT	3 cut(s)	51, 153, 255
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	288, 430
HpySE526I	ACGT	3 cut(s)	51, 153, 255
Hsp92II	CATG	4 cut(s)	133, 148, 254, 449
KpnI	GGTACC	1 cut(s)	323
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	147, 237, 433, 477
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	3 cut(s)	51, 153, 255
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	4 cut(s)	149, 239, 435, 479
MboI	GATC	4 cut(s)	147, 237, 433, 477
MboII	GAAGA	2 cut(s)	181, 487
MflI	RGATCY	2 cut(s)	433, 477
MlsI	TGGCCA	1 cut(s)	158
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	4 cut(s)	101, 102, 210, 272
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	205, 239, 308, 352, 355
Mox20I	TGGCCA	1 cut(s)	158
MroNI	GCCGGC	1 cut(s)	80
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	312, 377
MslI	CAYNNNNRTG	2 cut(s)	128, 143
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	5 cut(s)	81, 114, 317, 484, 493
MspR9I	CCNGG	3 cut(s)	105, 115, 484
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	18
NaeI	GCCGGC	1 cut(s)	82
NciI	CCSGG	2 cut(s)	115, 484
NdeII	GATC	4 cut(s)	147, 237, 433, 477
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	4 cut(s)	133, 148, 254, 449
NlaIV	GGNNCC	4 cut(s)	174, 321, 441, 500
NmeAIII	GCCGAG	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	2 cut(s)	133, 449
PaeI	GCATGC	1 cut(s)	449
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 159, 252
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	2 cut(s)	284, 464
PkrI	GCNGC	1 cut(s)	11
PleI	GAGTC	4 cut(s)	100, 102, 210, 272
PpsI	GAGTC	4 cut(s)	100, 102, 210, 272
PscI	ACATGT	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	4 cut(s)	174, 321, 441, 500
PspPI	GGNCC	2 cut(s)	295, 499
PsuI	RGATCY	2 cut(s)	433, 477
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	2 cut(s)	128, 143
SaqAI	TTAA	2 cut(s)	312, 377
SatI	GCNGC	1 cut(s)	10
Sau3AI	GATC	4 cut(s)	147, 237, 433, 477
Sau96I	GGNCC	2 cut(s)	295, 499
SchI	GAGTC	4 cut(s)	101, 102, 210, 272
ScrFI	CCNGG	3 cut(s)	105, 115, 484
SetI	ASST	9 cut(s)	54, 156, 182, 197, 231, 258, 325, 395, 428
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	2 cut(s)	295, 499
SmiMI	CAYNNNNRTG	2 cut(s)	128, 143
SphI	GCATGC	1 cut(s)	449
SsiI	CCGC	3 cut(s)	7, 19, 443
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	3 cut(s)	103, 113, 482
StyI	CCWWGG	1 cut(s)	405
TaiI	ACGT	3 cut(s)	54, 156, 258
TaqI	TCGA	2 cut(s)	126, 150
TfiI	GAWTC	2 cut(s)	284, 464
Tru1I	TTAA	2 cut(s)	312, 377
Tru9I	TTAA	2 cut(s)	312, 377
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	295, 499
XceI	RCATGY	2 cut(s)	133, 449
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmiI	GTMKAC	1 cut(s)	343
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.