Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

70657292 .. 70657916

Gene Structure 625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGGAAGTTTTGGTGAGGATCAACTGAAAGAGATTGCCTGCGCGCTGGAGCACAGTGGGCACCGGTTCTTGTGGTCCATACGTTGCCCCCCACCAAAGGGAAAGATTACTCACCCCAGCGACTATGCCGATCCCGCGGCCATCTTGCCCGAGGGGTTTCTCCAACGGACGGCTGGGATCGGAAAGATCATAGGGTGGGCCCCACCAGTGGCGGTGTTGGCCCACCCGGCCGTGGGAGGTTTTGTATCTCATTGCGGGTGGAATTCGATACTGGAGAGTCTTTGGTTCGGTGTGCCTGTCGCTACGTGGCCAATGTACTCGGAGCAACAAATGAATGCATTTGAGATGGTGAAGGAATTAGAATTGGCGGTGAAGATTAGTGTAGATTACGGGTGGGACTTTTATAACTCCGGTCAGGGGGGGCAAATGGTTTTGAGTGCCCAAGAGATAGAAAGAGGAGTTAGGGAGGTGATGGAGCATGATAGTGACATAAGGAAGAAGGTGAACGAGATGAGTGAAATGTGCAAGAAATCCTTGATGGATGGTGGTTCTTCCTACTCTTCATTGGGACGTTTTATTGATCAGATATTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

198

Amino Acids

21.94

Weight (kDa)

5.34

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	5 - 118	8.3e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	405
AccB1I	GGYRCC	1 cut(s)	60
AccII	CGCG	2 cut(s)	44, 137
AciI	CCGC	5 cut(s)	135, 137, 212, 255, 368
AclWI	GGATC	3 cut(s)	27, 125, 185
AcoI	YGGCCR	3 cut(s)	138, 228, 308
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	7 cut(s)	97, 98, 169, 208, 232, 233, 417
AgeI	ACCGGT	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	27, 125, 185
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	5 cut(s)	138, 198, 219, 228, 308
ApaI	GGGCCC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	262
AsiGI	ACCGGT	1 cut(s)	63
AspLEI	GCGC	2 cut(s)	44, 46
AspS9I	GGNCC	4 cut(s)	75, 198, 199, 220
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	6 cut(s)	26, 104, 361, 382, 481, 514
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	3 cut(s)	63, 202, 442
BalI	TGGCCA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	54
BccI	CCATC	5 cut(s)	149, 340, 466, 532, 536
BceAI	ACGGC	2 cut(s)	186, 215
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	227
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	75, 198, 199, 220
BmiI	GGNNCC	3 cut(s)	62, 200, 201
BmrFI	CCNGG	1 cut(s)	227
BpmI	CTGGAG	2 cut(s)	68, 293
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	135, 150, 231
BsaWI	WCCGGW	2 cut(s)	63, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	7 cut(s)	97, 98, 169, 208, 232, 233, 417
Bse118I	RCCGGY	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	206, 276
Bse3DI	GCAATG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	135, 150, 231
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	7 cut(s)	97, 98, 169, 208, 232, 233, 417
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	206, 276
BsePI	GCGCGC	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	3 cut(s)	63, 202, 442
BseX3I	CGGCCG	1 cut(s)	228
BseYI	CCCAGC	2 cut(s)	116, 173
Bsh1236I	CGCG	2 cut(s)	44, 137
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	5 cut(s)	140, 200, 221, 230, 310
BshNI	GGYRCC	1 cut(s)	60
BshTI	ACCGGT	1 cut(s)	63
BsiEI	CGRYCG	1 cut(s)	231
BsiHKAI	GWGCWC	1 cut(s)	54
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	64, 227, 411
BslFI	GGGAC	2 cut(s)	410, 582
BslI	CCNNNNNNNGG	7 cut(s)	97, 98, 169, 208, 232, 233, 417
BsmFI	GGGAC	2 cut(s)	410, 582
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	5 cut(s)	140, 200, 221, 230, 310
BsoBI	CYCGRG	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	4 cut(s)	54, 63, 202, 442
Bsp143I	GATC	5 cut(s)	19, 130, 177, 186, 580
BspACI	CCGC	5 cut(s)	135, 137, 212, 255, 368
BspANI	GGCC	5 cut(s)	140, 200, 221, 230, 310
BspFNI	CGCG	2 cut(s)	44, 137
BspLI	GGNNCC	3 cut(s)	62, 200, 201
BspPI	GGATC	3 cut(s)	27, 125, 185
BspT107I	GGYRCC	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	63
BsrI	ACTGG	2 cut(s)	206, 276
BssAI	RCCGGY	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	135, 150, 231
BssHII	GCGCGC	1 cut(s)	42
BssMI	GATC	5 cut(s)	19, 130, 177, 186, 580
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	565
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	40, 44
BstDSI	CCRYGG	2 cut(s)	135, 231
BstF5I	GGATG	1 cut(s)	547
BstFNI	CGCG	2 cut(s)	44, 137
BstHHI	GCGC	2 cut(s)	44, 46
BstKTI	GATC	5 cut(s)	22, 133, 180, 189, 583
BstMBI	GATC	5 cut(s)	19, 130, 177, 186, 580
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 134, 218, 227
BstSCI	CCNGG	1 cut(s)	225
BstSLI	GKGCMC	3 cut(s)	63, 202, 442
BstUI	CGCG	2 cut(s)	44, 137
BstZI	CGGCCG	1 cut(s)	228
BsuRI	GGCC	5 cut(s)	140, 200, 221, 230, 310
BtgI	CCRYGG	2 cut(s)	135, 231
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	2 cut(s)	61, 213
Cac8I	GCNNGC	2 cut(s)	40, 44
CfoI	GCGC	2 cut(s)	44, 46
Cfr10I	RCCGGY	1 cut(s)	63
Cfr13I	GGNCC	4 cut(s)	75, 198, 199, 220
Cfr42I	CCGCGG	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	316
CspAI	ACCGGT	1 cut(s)	63
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	6 cut(s)	140, 173, 200, 221, 230, 310
CviKI_1	RGCY	6 cut(s)	140, 173, 200, 221, 230, 310
CviQI	GTAC	1 cut(s)	316
DpnI	GATC	5 cut(s)	21, 132, 179, 188, 582
DpnII	GATC	5 cut(s)	19, 130, 177, 186, 580
EaeI	YGGCCR	3 cut(s)	138, 228, 308
EagI	CGGCCG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	565
EarI	CTCTTC	1 cut(s)	565
EclXI	CGGCCG	1 cut(s)	228
Eco24I	GRGCYC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	202
FaeI	CATG	1 cut(s)	482
FaiI	YATR	6 cut(s)	80, 126, 191, 405, 480, 491
FalI	AAGNNNNNCTT	2 cut(s)	518, 550
FaqI	GGGAC	2 cut(s)	410, 582
FatI	CATG	1 cut(s)	478
FauI	CCCGC	2 cut(s)	142, 248
FbaI	TGATCA	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	138
GlaI	GCGC	2 cut(s)	43, 45
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	2 cut(s)	120, 177
GsuI	CTGGAG	2 cut(s)	68, 293
HaeIII	GGCC	5 cut(s)	140, 200, 221, 230, 310
HapII	CCGG	3 cut(s)	64, 227, 411
HhaI	GCGC	2 cut(s)	44, 46
Hin1II	CATG	1 cut(s)	482
Hin6I	GCGC	2 cut(s)	42, 44
HinP1I	GCGC	2 cut(s)	42, 44
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	3 cut(s)	64, 227, 411
HphI	GGTGA	6 cut(s)	26, 104, 361, 382, 481, 514
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	3 cut(s)	182, 322, 585
Hpy8I	GTNNAC	1 cut(s)	505
HpyAV	CCTTC	2 cut(s)	346, 493
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	3 cut(s)	82, 305, 571
HpyCH4V	TGCA	2 cut(s)	338, 525
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 134, 218, 227
HpySE526I	ACGT	3 cut(s)	82, 305, 571
Hsp92II	CATG	1 cut(s)	482
HspAI	GCGC	2 cut(s)	42, 44
Ksp22I	TGATCA	1 cut(s)	580
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	5 cut(s)	19, 130, 177, 186, 580
LmnI	GCTCC	3 cut(s)	49, 322, 475
MaeII	ACGT	3 cut(s)	82, 305, 571
MaeIII	GTNAC	1 cut(s)	485
MalI	GATC	5 cut(s)	21, 132, 179, 188, 582
MboI	GATC	5 cut(s)	19, 130, 177, 186, 580
MboII	GAAGA	4 cut(s)	385, 508, 543, 552
MhlI	GDGCHC	4 cut(s)	54, 63, 202, 442
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	3 cut(s)	262, 356, 362
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	10, 145, 230, 449, 460
Mox20I	TGGCCA	1 cut(s)	310
Mph1103I	ATGCAT	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	310
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	3 cut(s)	64, 227, 411
MspR9I	CCNGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	340
MvnI	CGCG	2 cut(s)	44, 137
MwoI	GCNNNNNNNGC	4 cut(s)	58, 134, 218, 227
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	5 cut(s)	19, 130, 177, 186, 580
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	3 cut(s)	62, 200, 201
NmuCI	GTSAC	1 cut(s)	485
NsiI	ATGCAT	1 cut(s)	340
PauI	GCGCGC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	340
PinAI	ACCGGT	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
Ppu21I	YACGTR	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	405
PspFI	CCCAGC	2 cut(s)	116, 173
PspN4I	GGNNCC	3 cut(s)	62, 200, 201
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	4 cut(s)	75, 198, 199, 220
PteI	GCGCGC	1 cut(s)	42
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	483
SacII	CCGCGG	1 cut(s)	138
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	5 cut(s)	19, 130, 177, 186, 580
Sau96I	GGNCC	4 cut(s)	75, 198, 199, 220
SchI	GAGTC	1 cut(s)	286
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	4 cut(s)	54, 63, 202, 442
SetI	ASST	6 cut(s)	85, 241, 308, 471, 504, 574
SfiI	GGCCNNNNNGGCC	1 cut(s)	227
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	262, 356, 362
SsiI	CCGC	5 cut(s)	135, 137, 212, 255, 368
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	3 cut(s)	85, 308, 574
TaqI	TCGA	1 cut(s)	266
TasI	AATT	3 cut(s)	262, 356, 362
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	1 cut(s)	140
TscAI	CASTG	2 cut(s)	61, 213
TseFI	GTSAC	1 cut(s)	485
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	2 cut(s)	347, 552
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	61, 213
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.