Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000442.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

38563 .. 39027

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000442.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgaagaaagctgcagagttggtaatcattcctgccccaggaattgggcacatcgtgtcagcggtggagatggcaaagctcctggttgctcgagatgaccaacttttcatcacagtcctcatcatgaagctagaccttgactccaagcccaagagaatagatattacttatacaggatctgaccgtatgaacttcatcaccctcccagaggtcaacataagcacagaaggcatgagtcccaacaacttcctcaagttatttgttgaaagtcacaaacctcacattaaagatacggtctccaagctcagccagtcccaatctgaggctagacttgctgggtttgtcattgacaagttctgtaccagtatgatagacgttgccaatgaattaggggttcctacatgtgtttttcgcatccaacgcagggtttcttgcgctcttgttccacctccaaatccttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

154

Amino Acids

16.98

Weight (kDa)

8.48

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	184
AdeI	CACNNNGTG	1 cut(s)	55
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	5 cut(s)	38, 44, 208, 322, 424
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	37, 81
AluBI	AGCT	4 cut(s)	11, 79, 130, 304
AluI	AGCT	4 cut(s)	11, 79, 130, 304
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	184
AlwNI	CAGNNNCTG	1 cut(s)	179
Ama87I	CYCGRG	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	90
BaeGI	GKGCMC	1 cut(s)	51
BccI	CCATC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	39, 83
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	2 cut(s)	131, 327
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	12
BlpI	GCTNAGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	39, 83
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	2 cut(s)	39, 83
BmsI	GCATC	1 cut(s)	423
Bpu1102I	GCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	236
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 44, 208, 322, 424
Bse1I	ACTGG	2 cut(s)	310, 363
BseBI	CCWGG	2 cut(s)	39, 83
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	5 cut(s)	38, 44, 208, 322, 424
BseMII	CTCAG	2 cut(s)	312, 319
BseNI	ACTGG	2 cut(s)	310, 363
BseSI	GKGCMC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	90
BslFI	GGGAC	2 cut(s)	222, 298
BslI	CCNNNNNNNGG	5 cut(s)	38, 44, 208, 322, 424
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	2 cut(s)	222, 298
Bso31I	GGTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	176
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	313, 318
BspHI	TCATGA	2 cut(s)	123, 461
BspLI	GGNNCC	1 cut(s)	396
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	1 cut(s)	184
BspTNI	GGTCTC	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	310, 363
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	39, 83
Bst4CI	ACNGT	3 cut(s)	115, 185, 295
BstDEI	CTNAG	2 cut(s)	305, 321
BstENI	CCTNNNNNAGG	2 cut(s)	36, 206
BstF5I	GGATG	1 cut(s)	414
BstHHI	GCGC	1 cut(s)	437
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	176
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 332, 420
BstNI	CCWGG	2 cut(s)	39, 83
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	2 cut(s)	37, 81
BstSFI	CTRYAG	1 cut(s)	12
BstSLI	GKGCMC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	414
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	2 cut(s)	123, 461
CfoI	GCGC	1 cut(s)	437
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	4 cut(s)	124, 232, 402, 462
CviJI	RGCY	7 cut(s)	11, 79, 130, 148, 304, 309, 326
CviKI_1	RGCY	7 cut(s)	11, 79, 130, 148, 304, 309, 326
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	305, 321
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
DraIII	CACNNNGTG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	90
EcoNI	CCTNNNNNAGG	2 cut(s)	36, 206
EcoRII	CCWGG	2 cut(s)	37, 81
FaeI	CATG	4 cut(s)	127, 235, 405, 465
FaiI	YATR	8 cut(s)	125, 171, 188, 218, 233, 368, 403, 463
FaqI	GGGAC	2 cut(s)	222, 298
FatI	CATG	4 cut(s)	123, 231, 401, 461
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	131, 327
GlaI	GCGC	1 cut(s)	436
GluI	GCNGC	1 cut(s)	12
GsaI	CCCAGC	1 cut(s)	339
HhaI	GCGC	1 cut(s)	437
Hin1II	CATG	4 cut(s)	127, 235, 405, 465
Hin6I	GCGC	1 cut(s)	435
HinP1I	GCGC	1 cut(s)	435
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	140, 235
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	2 cut(s)	181, 322
Hpy188III	TCNNGA	3 cut(s)	92, 124, 462
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	3 cut(s)	115, 185, 295
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 332, 420
HpyF3I	CTNAG	2 cut(s)	305, 321
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	127, 235, 405, 465
HspAI	GCGC	1 cut(s)	435
Kzo9I	GATC	1 cut(s)	176
LmnI	GCTCC	1 cut(s)	84
LweI	GCATC	1 cut(s)	423
MaeI	CTAG	2 cut(s)	131, 327
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	1 cut(s)	16
MflI	RGATCY	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	2 cut(s)	42, 386
MlyI	GAGTC	2 cut(s)	134, 244
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	7 cut(s)	128, 202, 212, 260, 288, 316, 459
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	2 cut(s)	39, 83
MvaI	CCWGG	2 cut(s)	39, 83
MwoI	GCNNNNNNNGC	3 cut(s)	228, 332, 420
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	127, 235, 405, 465
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	405
PaeR7I	CTCGAG	1 cut(s)	90
PagI	TCATGA	2 cut(s)	123, 461
PciI	ACATGT	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	13
PleI	GAGTC	2 cut(s)	134, 243
PpsI	GAGTC	2 cut(s)	134, 243
PscI	ACATGT	1 cut(s)	401
Psp6I	CCWGG	2 cut(s)	37, 81
PspFI	CCCAGC	1 cut(s)	335
PspGI	CCWGG	2 cut(s)	37, 81
PspN4I	GGNNCC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	1 cut(s)	176
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	176
SchI	GAGTC	2 cut(s)	134, 244
ScrFI	CCNGG	2 cut(s)	39, 83
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	9 cut(s)	13, 81, 132, 138, 213, 280, 306, 378, 451
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	12
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	2 cut(s)	90, 251
SmoI	CTYRAG	2 cut(s)	90, 251
Sse9I	AATT	2 cut(s)	42, 386
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	2 cut(s)	131, 327
StyD4I	CCNGG	2 cut(s)	37, 81
TaaI	ACNGT	3 cut(s)	115, 185, 295
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	91
TasI	AATT	2 cut(s)	42, 386
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	7 cut(s)	17, 97, 140, 184, 203, 399, 450
Van91I	CCANNNNNTGG	1 cut(s)	44
XagI	CCTNNNNNAGG	2 cut(s)	36, 206
XceI	RCATGY	1 cut(s)	405
XhoI	CTCGAG	1 cut(s)	90
XspI	CTAG	2 cut(s)	131, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.