Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

56087021 .. 56090473

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0438000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCGGGTGTACTTCCTTGTTCATCATCAACTCTCTCTCTACTAACTCCACTCAATTTCCATTCTCAAGAGCAATGCAGAGCTTTGCATTCTCACTCTTTAAGCACCCAAAGGGGTGCTCTTTTTGTTTGTGCTGCCAAGAAGAAAGTTAGTTTCACAGACCAAATTCTTGATTACATTGAGGGGGGTCCTAAGTTGAGGAAATGGTATGGGGCACCTGAACTTTTACCTAAGGATGGGTCTGTTGCTGAAGATGAGGACGAATTATCAGAAGGAGATGAAACCAGGGATGCTGTTTTGGTAACTGACGGAGATAGCGAGATGGGGCAGATGGTAATATTGTCGTTGATTGTCAAAAGAGCTAGAGTAAAAGCATTGGTGAAGGATAAGCGGGCTGCACTTGAAGCATTTGGAACTTATGTTGAGTCATTGACTGGAGATTCAAGGGACAAGCCATTCCTAAGGAGAGCGCTGAGAGGAGTTTCCACAGTAATATGCCCAAATGAAGGTTTCTTATCTACTGTTGGGAGCTTGAAAGGGGTAAACCATGTCATTCTCTTATCTCAGTTGTCTGTTTACAAAGGTGCCGGTGGCATTCAAGCTCTCATGAAAAGCAATGCAAGAAAATTAGCCGAAGAAGATGAGTCAATACTGATGGCCTCGGGAATCCCTTACACCATCATCAGGGCTGGCTCGTTACAAAATTCTCCAGGTGGAACTCAGGGCTTTAGCTTTGAAAAGGGAACTGCAGCAAAAGGAACTCTTAGCAAAGAGGATGCGGCCTTTATTTGTGTGGAAGCAGTTGATGCAGTCCCCGAGGAAAGATTCATATTTGAGGTGGTGAATGGAGATGACAAGGTTTCAGATTGGAAAGAATGTTTGAATAGACTAATGGAGAAATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

301

Amino Acids

32.54

Weight (kDa)

5.57

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_10	PF13460	108 - 269	1.4e-10	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	214, 584
AciI	CCGC	3 cut(s)	5, 391, 779
AcsI	RAATTY	2 cut(s)	165, 703
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	12
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	236, 506, 684
AgsI	TTSAA	6 cut(s)	404, 444, 535, 599, 737, 883
AjnI	CCWGG	2 cut(s)	284, 709
AluBI	AGCT	5 cut(s)	83, 362, 531, 602, 732
AluI	AGCT	5 cut(s)	83, 362, 531, 602, 732
Alw21I	GWGCWC	1 cut(s)	121
Ama87I	CYCGRG	2 cut(s)	661, 815
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	2 cut(s)	657, 780
ApeKI	GCWGC	3 cut(s)	134, 395, 749
ApoI	RAATTY	2 cut(s)	165, 703
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	391, 853
AvaI	CYCGRG	2 cut(s)	661, 815
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	2 cut(s)	231, 461
BaeGI	GKGCMC	1 cut(s)	217
BanI	GGYRCC	2 cut(s)	214, 584
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	3 cut(s)	121, 382, 761
BccI	CCATC	5 cut(s)	230, 316, 325, 649, 686
BciT130I	CCWGG	2 cut(s)	286, 711
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	1 cut(s)	473
BisI	GCNGC	4 cut(s)	135, 396, 750, 780
BlsI	GCNGC	4 cut(s)	136, 397, 751, 781
Bme1390I	CCNGG	2 cut(s)	286, 711
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	2 cut(s)	661, 815
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	3 cut(s)	189, 216, 586
BmrFI	CCNGG	2 cut(s)	286, 711
BmsI	GCATC	3 cut(s)	280, 766, 796
BpmI	CTGGAG	2 cut(s)	456, 693
BpuEI	CTTGAG	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	285, 660, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 506, 684
Bse118I	RCCGGY	1 cut(s)	587
Bse1I	ACTGG	1 cut(s)	439
Bse21I	CCTNAGG	2 cut(s)	231, 461
Bse3DI	GCAATG	2 cut(s)	80, 622
BseBI	CCWGG	2 cut(s)	286, 711
BseDI	CCNNGG	3 cut(s)	285, 660, 816
BseGI	GGATG	3 cut(s)	241, 295, 781
BseLI	CCNNNNNNNGG	3 cut(s)	236, 506, 684
BseMI	GCAATG	2 cut(s)	80, 622
BseMII	CTCAG	3 cut(s)	464, 578, 734
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	492
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	3 cut(s)	121, 382, 761
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	2 cut(s)	659, 782
BshNI	GGYRCC	2 cut(s)	214, 584
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	2 cut(s)	661, 815
BsiSI	CCGG	1 cut(s)	588
BslFI	GGGAC	2 cut(s)	461, 797
BslI	CCNNNNNNNGG	3 cut(s)	236, 506, 684
BsmFI	GGGAC	2 cut(s)	461, 797
BsmI	GAATGC	2 cut(s)	88, 594
BsnI	GGCC	2 cut(s)	659, 782
BsoBI	CYCGRG	2 cut(s)	661, 815
Bsp1286I	GDGCHC	2 cut(s)	121, 217
BspACI	CCGC	3 cut(s)	5, 391, 779
BspANI	GGCC	2 cut(s)	659, 782
BspCNI	CTCAG	3 cut(s)	465, 577, 733
BspHI	TCATGA	1 cut(s)	606
BspLI	GGNNCC	3 cut(s)	189, 216, 586
BspMAI	CTGCAG	1 cut(s)	751
BspT107I	GGYRCC	2 cut(s)	214, 584
BsrDI	GCAATG	2 cut(s)	80, 622
BsrFI	RCCGGY	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	1 cut(s)	587
BssECI	CCNNGG	3 cut(s)	285, 660, 816
Bst2UI	CCWGG	2 cut(s)	286, 711
Bst4CI	ACNGT	2 cut(s)	490, 523
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	393, 691
BstDEI	CTNAG	7 cut(s)	192, 231, 461, 473, 564, 720, 764
BstF5I	GGATG	3 cut(s)	241, 295, 781
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 806
BstNI	CCWGG	2 cut(s)	286, 711
BstSCI	CCNGG	2 cut(s)	284, 709
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	3 cut(s)	121, 382, 761
Bsu36I	CCTNAGG	2 cut(s)	231, 461
BsuRI	GGCC	2 cut(s)	659, 782
BtsCI	GGATG	3 cut(s)	241, 295, 781
Cac8I	GCNNGC	2 cut(s)	393, 691
CciI	TCATGA	1 cut(s)	606
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	2 cut(s)	548, 607
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	7 cut(s)	192, 231, 461, 473, 564, 720, 764
Eco47I	GGWCC	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	270
Eco81I	CCTNAGG	2 cut(s)	231, 461
Eco88I	CYCGRG	2 cut(s)	661, 815
EcoO109I	RGGNCCY	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	284, 709
FaeI	CATG	2 cut(s)	551, 610
FaiI	YATR	6 cut(s)	210, 420, 496, 549, 608, 830
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	2 cut(s)	461, 797
FatI	CATG	2 cut(s)	547, 606
FauI	CCCGC	1 cut(s)	384
Fnu4HI	GCNGC	4 cut(s)	135, 396, 750, 780
FokI	GGATG	3 cut(s)	248, 302, 788
Fsp4HI	GCNGC	4 cut(s)	135, 396, 750, 780
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	4 cut(s)	135, 396, 750, 780
GsuI	CTGGAG	2 cut(s)	456, 693
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	2 cut(s)	659, 782
HapII	CCGG	1 cut(s)	588
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	2 cut(s)	551, 610
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	5 cut(s)	425, 440, 644, 666, 825
HpaII	CCGG	1 cut(s)	588
HphI	GGTGA	2 cut(s)	391, 853
Hpy166II	GTNNAC	3 cut(s)	11, 544, 577
Hpy188I	TCNGA	2 cut(s)	271, 865
Hpy188III	TCNNGA	4 cut(s)	68, 170, 607, 663
Hpy8I	GTNNAC	3 cut(s)	11, 544, 577
HpyAV	CCTTC	3 cut(s)	266, 376, 500
HpyCH4III	ACNGT	2 cut(s)	490, 523
HpyCH4V	TGCA	6 cut(s)	78, 88, 398, 620, 749, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 806
HpyF3I	CTNAG	7 cut(s)	192, 231, 461, 473, 564, 720, 764
Hsp92II	CATG	2 cut(s)	551, 610
HspAI	GCGC	1 cut(s)	470
LmnI	GCTCC	1 cut(s)	528
Lsp1109I	GCAGC	3 cut(s)	121, 382, 761
LweI	GCATC	3 cut(s)	280, 766, 796
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	301, 696
MboII	GAAGA	4 cut(s)	154, 263, 647, 650
MhlI	GDGCHC	2 cut(s)	121, 217
MluCI	AATT	5 cut(s)	55, 165, 263, 626, 703
MlyI	GAGTC	2 cut(s)	434, 653
MnlI	CCTC	8 cut(s)	175, 192, 250, 470, 670, 766, 811, 829
MseI	TTAA	2 cut(s)	101, 904
MspI	CCGG	1 cut(s)	588
MspR9I	CCNGG	2 cut(s)	286, 711
Mva1269I	GAATGC	2 cut(s)	88, 594
MvaI	CCWGG	2 cut(s)	286, 711
MwoI	GCNNNNNNNGC	2 cut(s)	404, 806
NlaIII	CATG	2 cut(s)	551, 610
NlaIV	GGNNCC	3 cut(s)	189, 216, 586
PagI	TCATGA	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PctI	GAATGC	2 cut(s)	88, 594
PfeI	GAWTC	3 cut(s)	440, 666, 825
PkrI	GCNGC	4 cut(s)	136, 397, 751, 781
PleI	GAGTC	2 cut(s)	433, 652
PpsI	GAGTC	2 cut(s)	433, 652
PpuMI	RGGWCCY	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	2 cut(s)	284, 709
PspGI	CCWGG	2 cut(s)	284, 709
PspN4I	GGNNCC	3 cut(s)	189, 216, 586
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	751
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	101, 904
SatI	GCNGC	4 cut(s)	135, 396, 750, 780
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	434, 653
ScrFI	CCNGG	2 cut(s)	286, 711
SduI	GDGCHC	2 cut(s)	121, 217
SfaNI	GCATC	3 cut(s)	280, 766, 796
SfcI	CTRYAG	1 cut(s)	747
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	5 cut(s)	55, 165, 263, 626, 703
SsiI	CCGC	3 cut(s)	5, 391, 779
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	284, 709
TaaI	ACNGT	2 cut(s)	490, 523
TasI	AATT	5 cut(s)	55, 165, 263, 626, 703
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	3 cut(s)	440, 666, 825
Tru1I	TTAA	2 cut(s)	101, 904
Tru9I	TTAA	2 cut(s)	101, 904
TseI	GCWGC	3 cut(s)	134, 395, 749
TspDTI	ATGAA	5 cut(s)	12, 294, 519, 623, 817
TspGWI	ACGGA	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	2 cut(s)	165, 703
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.