Rorug02G0438200

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
56107893 .. 56109619
1727 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0438200.1

Sequence Viewer

Length: 345 bp
ATGGAAGGTGGTATATATACTGGCATAGGAAATGGTACCCAGTTGGATAGCAAGGTTGTGCAGACATTTCAGAAGAGCTTTGTACAAGTACAGGACATTTTGGATCAGAACAGATTGCTAATAAATGAGATTAACCAAAACCATGAGTCCAAGATCCCTGATAACCTCAGCAGGAATGTGGGCTTAATTAGAGAGCTTAACAACAACATTAGAAGGGTGGTAGATCTCTACGCTGATCTCTCCAGCAATTTTTCCAGGTCAATGGAAGCCTCATCCGAAGGTGAATCTGCTGGGACTTTGAAATCGGATGGAAAATCTAGTGAGAAGAGAATTAGATCCGGGTAA

Protein Analysis

114

Amino Acids

12.63

Weight (kDa)

5.81

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elf4 PF07011 15 - 95 2.8e-41 Early Flowering 4 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000209)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AclWI GGATC 3 cut(s) 111, 148, 330
AfaI GTAC 3 cut(s) 37, 84, 90
AgsI TTSAA 1 cut(s) 301
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 78, 196
AluI AGCT 2 cut(s) 78, 196
AlwI GGATC 3 cut(s) 111, 148, 330
Asp718I GGTACC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 293
BanI GGYRCC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 256
BcnI CCSGG 1 cut(s) 340
BfaI CTAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 256, 340
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 256, 340
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 25, 40
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 272, 313
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 25, 40
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 307
BsmFI GGGAC 1 cut(s) 307
Bsp1407I TGTACA 1 cut(s) 82
Bsp143I GATC 5 cut(s) 103, 153, 223, 235, 335
BspCNI CTCAG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 3 cut(s) 111, 148, 330
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 35
BsrGI TGTACA 1 cut(s) 82
BsrI ACTGG 2 cut(s) 25, 40
BssMI GATC 5 cut(s) 103, 153, 223, 235, 335
Bst2UI CCWGG 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 68, 320
BstAUI TGTACA 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 2 cut(s) 272, 313
BstKTI GATC 5 cut(s) 106, 156, 226, 238, 338
BstMBI GATC 5 cut(s) 103, 153, 223, 235, 335
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 254, 338
BstX2I RGATCY 3 cut(s) 153, 223, 335
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 153, 223, 335
BtsCI GGATG 2 cut(s) 272, 313
Csp6I GTAC 3 cut(s) 36, 83, 89
CviAII CATG 1 cut(s) 143
CviJI RGCY 4 cut(s) 78, 183, 196, 269
CviKI_1 RGCY 4 cut(s) 78, 183, 196, 269
CviQI GTAC 3 cut(s) 36, 83, 89
DdeI CTNAG 1 cut(s) 167
DpnI GATC 5 cut(s) 105, 155, 225, 237, 337
DpnII GATC 5 cut(s) 103, 153, 223, 235, 335
Eam1104I CTCTTC 2 cut(s) 68, 320
EarI CTCTTC 2 cut(s) 68, 320
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 146
FaiI YATR 5 cut(s) 14, 16, 18, 26, 144
FaqI GGGAC 1 cut(s) 307
FatI CATG 1 cut(s) 142
FokI GGATG 2 cut(s) 259, 320
FspBI CTAG 1 cut(s) 318
GsaI CCCAGC 1 cut(s) 294
GsuI CTGGAG 1 cut(s) 226
HapII CCGG 1 cut(s) 339
Hin1II CATG 1 cut(s) 146
HinfI GANTC 2 cut(s) 146, 284
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 4 cut(s) 72, 108, 277, 307
HpyAV CCTTC 2 cut(s) 207, 272
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 1 cut(s) 146
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 5 cut(s) 103, 153, 223, 235, 335
LguI GCTCTTC 1 cut(s) 68
LpnPI CCDG 9 cut(s) 6, 53, 77, 157, 171, 241, 256, 268, 276
MaeI CTAG 1 cut(s) 318
MalI GATC 5 cut(s) 105, 155, 225, 237, 337
MboI GATC 5 cut(s) 103, 153, 223, 235, 335
MboII GAAGA 2 cut(s) 85, 337
MflI RGATCY 3 cut(s) 153, 223, 335
MluCI AATT 3 cut(s) 186, 247, 330
MlyI GAGTC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 2 cut(s) 176, 280
MseI TTAA 3 cut(s) 132, 185, 198
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 256, 340
MvaI CCWGG 1 cut(s) 256
NciI CCSGG 1 cut(s) 340
NdeII GATC 5 cut(s) 103, 153, 223, 235, 335
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 37
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 254
PspFI CCCAGC 1 cut(s) 290
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 3 cut(s) 153, 223, 335
RsaI GTAC 3 cut(s) 37, 84, 90
RsaNI GTAC 3 cut(s) 36, 83, 89
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 132, 185, 198
Sau3AI GATC 5 cut(s) 103, 153, 223, 235, 335
SchI GAGTC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 256, 340
SetI ASST 7 cut(s) 10, 57, 80, 168, 198, 260, 283
Sse9I AATT 3 cut(s) 186, 247, 330
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 2 cut(s) 254, 338
TasI AATT 3 cut(s) 186, 247, 330
TatI WGTACW 2 cut(s) 82, 88
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 3 cut(s) 132, 185, 198
Tru9I TTAA 3 cut(s) 132, 185, 198
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.