Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

72362191 .. 72362622

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG500800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGAGGCTTTAGCGAGGACTTAGAGATTGCCCACGACTTAGAGCACGCGGGCCATCAGTTCTTGTTGTCCTTATGTCGGCCTTCACCCACTGGAATAATTTCTTCTCCAAGTGACTATGATGACCACACCGGAGTCTTGCCTGAAGGGTTCCTTGATCGAACAATTGGGATTGGAAAGGTCATAGGCTGGGCCCCTCAAGTTGCCATCTTGGCTCACCCATCTGTGAGAGGATTTGTATCCCATTGTGGGTGGAATTCCACTCTTGCAAGTCTTTGGCACGATGTGCCCATTTCCACATGGCCATTGTACGCAGAGCAACAGCTTAACGCGTTTCAGCTGGTGAAGGAATTGGAATTGATGGTGGAAATTGATATGAGCTACAGGAGCGATAGTCCAGTTCTTGTGAGCGCAAAGGAGATAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

143

Amino Acids

15.77

Weight (kDa)

4.68

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	53 - 117	1.2e-15	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	50, 332
AciI	CCGC	1 cut(s)	50
AcoI	YGGCCR	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	256
AcuI	CTGAAG	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	78, 249
AflIII	ACRYGT	1 cut(s)	330
AluBI	AGCT	3 cut(s)	325, 340, 381
AluI	AGCT	3 cut(s)	325, 340, 381
Alw21I	GWGCWC	1 cut(s)	48
AoxI	GGCC	4 cut(s)	52, 80, 192, 302
ApaI	GGGCCC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	52, 192, 193
AsuHPI	GGTGA	3 cut(s)	78, 209, 355
BaeGI	GKGCMC	2 cut(s)	196, 291
BalI	TGGCCA	1 cut(s)	304
BanII	GRGCYC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	48
BccI	CCATC	4 cut(s)	63, 215, 229, 355
BciVI	GTATCC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	212
BmgT120I	GGNCC	3 cut(s)	52, 192, 193
BmiI	GGNNCC	3 cut(s)	152, 194, 195
BpuEI	CTTGAG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	238
BsaWI	WCCGGW	1 cut(s)	131
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 249
Bse1I	ACTGG	2 cut(s)	97, 398
Bse8I	GATNNNNATC	1 cut(s)	238
BseJI	GATNNNNATC	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	78, 249
BseNI	ACTGG	2 cut(s)	97, 398
BseSI	GKGCMC	2 cut(s)	196, 291
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	2 cut(s)	50, 332
BshFI	GGCC	4 cut(s)	54, 82, 194, 304
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	78, 249
BsnI	GGCC	4 cut(s)	54, 82, 194, 304
Bsp120I	GGGCCC	1 cut(s)	192
Bsp1286I	GDGCHC	3 cut(s)	48, 196, 291
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	4 cut(s)	54, 82, 194, 304
BspFNI	CGCG	2 cut(s)	50, 332
BspLI	GGNNCC	3 cut(s)	152, 194, 195
BsrI	ACTGG	2 cut(s)	97, 398
BssMI	GATC	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstC8I	GCNNGC	2 cut(s)	48, 52
BstDEI	CTNAG	2 cut(s)	22, 40
BstFNI	CGCG	2 cut(s)	50, 332
BstHHI	GCGC	1 cut(s)	413
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 286, 387
BstSFI	CTRYAG	1 cut(s)	382
BstSLI	GKGCMC	2 cut(s)	196, 291
BstUI	CGCG	2 cut(s)	50, 332
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	4 cut(s)	54, 82, 194, 304
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	48, 52
CfoI	GCGC	1 cut(s)	413
Cfr13I	GGNCC	3 cut(s)	52, 192, 193
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	300
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	22, 40
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
DraIII	CACNNNGTG	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	196
FaeI	CATG	1 cut(s)	303
FaiI	YATR	5 cut(s)	76, 120, 185, 301, 377
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	1 cut(s)	299
FauI	CCCGC	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	196
GlaI	GCGC	1 cut(s)	412
GsaI	CCCAGC	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	54, 82, 194, 304
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	413
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	411
HinP1I	GCGC	1 cut(s)	411
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	3 cut(s)	78, 209, 355
HpyAV	CCTTC	3 cut(s)	93, 140, 340
HpyCH4V	TGCA	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 286, 387
HpyF3I	CTNAG	2 cut(s)	22, 40
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	1 cut(s)	411
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	7 cut(s)	78, 145, 156, 175, 326, 370, 411
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	96
MfeI	CAATTG	1 cut(s)	165
MhlI	GDGCHC	3 cut(s)	48, 196, 291
MlsI	TGGCCA	1 cut(s)	304
MluCI	AATT	6 cut(s)	99, 165, 256, 350, 356, 369
MluI	ACGCGT	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	304
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	10, 207, 224, 418
Mox20I	TGGCCA	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	304
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	304
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	165
MvnI	CGCG	2 cut(s)	50, 332
MwoI	GCNNNNNNNGC	3 cut(s)	212, 286, 387
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	3 cut(s)	152, 194, 195
NmuCI	GTSAC	1 cut(s)	113
PdmI	GAANNNNTTC	1 cut(s)	100
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	152, 194, 195
PspOMI	GGGCCC	1 cut(s)	192
PspPI	GGNCC	3 cut(s)	52, 192, 193
PvuII	CAGCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	52, 192, 193
SchI	GAGTC	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	48, 196, 291
SetI	ASST	4 cut(s)	183, 327, 342, 383
SfcI	CTRYAG	1 cut(s)	382
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	6 cut(s)	99, 165, 256, 350, 356, 369
SsiI	CCGC	1 cut(s)	50
TaqI	TCGA	1 cut(s)	160
TasI	AATT	6 cut(s)	99, 165, 256, 350, 356, 369
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.