Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

11395424 .. 11396848

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1129500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGAAGAAGCCAGCAGAGCTAGTGTTCGTCCCAGCCCCAGGCATTGGCCACATCATATCAACGGTTGAGATCGCAAAGCAACTCGTCGCTCAAGATGATCAACTCTTCATCACAATCCTCATCATGAAGCTCCCCTTCGACAAACTCTTCACCAACACAGACTCTTCAATCTCACACCGCATCAACTTCATCAACCTCCCCGAAACCCTAGTCGACATACCACTCGTCTTCCCCTTTTTCGTCAACCCATTCGTTGAGAGTCACAAAATCCACGTCAAAGAAGCTGTCACGAAACTACTCACTGATCAATCAGCTCAGTCCGAGTCCAAAAACCCTAGGGCTCTTGCCGGGTTCGTCATTGACATGTTCTGCACCTCTATGATTGACGTGGCAAACGAGTTTGGAGTTCCTTCTTTCCTCTTCTACACATCCAGCGCCGCCATGCTAGGGCTCTGGTTGCATCTCGCGTCGCTTCGCAACGAACACGACAAGGATATCTATGAATTGATTAACTCGAGTACTGAGTTGGTCATCCCGAGTTTTGTCAACCCTGTGCCCACTAAAGTGTTCCCTAGTGAGCTTTCGGACAAGGAAGGCGCCGCGATCTTCCTCGACTTTGGAACTAGGTTTAGAGAAACCAAGGGTATTTTGGTGAACACGTTCTCGGAGCTGGAAGCCCATGCGATTCACTCCCTGTCGGACGGTAAGACCCCTCCGGTGTACCCTGTGGGGCCCCTGTTGAATCTGAAGAGTGATGATACTCGTGTGGCTCCGGATAAGGCCAGAGAAAAGTCTGATATCCTGGATTGGCTTGACGATCAGCCCCCGTTGTCGGTGTTGTTCCTGTGCTTCGGGAGCATGGGTAGCTTCTGTGAGGCCCAAGTGAAAGAGATAGCCTGCGCGCTGGAGCACAGCGGGCTTCGGTTCTTGTGGTCCCTACGCAAGCCCCCGCCCAAGGGGACCTTGACCTTGCCAAGCGACTATGCGGATCCCAAGGCAGTCTTGCCCGAAGGGTTCCTTGATCGGACAGCCACGACCGGGAAGGTCCTAGGATGGGCTCCGCAAGTGGCGATATTATCTCACCCGGCGGTCGGAGGTTTCGTGTCGCATTGCGGGTGGAATTCCGCTCTGGAGAGTATATGGCACGGCGTGCCGATTGCGACGTGGCCAATGTACGCAGAGCAACAATCGAATGCATTTGAGCTGTTGGAGTTGGGATTGGCAGTGGAGATTAAGATGGATTATAAGACGGAGAGTGAAGTAGTGGTGAGCGCAGAAGAAATAGAGAGAGGGATTAAGGAAGTGATGGAACTTGATGGTGATACAAGGAAGAGAGTGAAAGAGACGAGTGAAAAAGGTAAAAAAGCCTTGGAGTTTGGTGGTTCCTCTTACACTTCATTGGGTCGTTTTATTGATCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

475

Amino Acids

52.4

Weight (kDa)

5.16

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	278 - 428	4.5e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1245
AccB1I	GGYRCC	1 cut(s)	596
AccB7I	CCANNNNNTGG	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	1127
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	3 cut(s)	467, 602, 902
AccIII	TCCGGA	1 cut(s)	772
AclWI	GGATC	2 cut(s)	983, 996
AcoI	YGGCCR	2 cut(s)	46, 1166
AcsI	RAATTY	2 cut(s)	1120, 1419
AcuI	CTGAAG	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	597
AdeI	CACNNNGTG	1 cut(s)	1150
AfaI	GTAC	3 cut(s)	520, 722, 1175
AfiI	CCNNNNNNNGG	9 cut(s)	38, 44, 447, 832, 955, 956, 1038, 1054, 1091
AflIII	ACRYGT	2 cut(s)	363, 657
AgsI	TTSAA	2 cut(s)	168, 742
AjiI	CACGTC	3 cut(s)	274, 388, 1164
AjnI	CCWGG	2 cut(s)	37, 801
AleI	CACNNNNGTG	1 cut(s)	563
AluBI	AGCT	8 cut(s)	19, 130, 284, 314, 580, 670, 867, 1204
AluI	AGCT	8 cut(s)	19, 130, 284, 314, 580, 670, 867, 1204
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	1 cut(s)	1337
AlwI	GGATC	2 cut(s)	983, 996
Ama87I	CYCGRG	2 cut(s)	514, 535
Aor13HI	TCCGGA	1 cut(s)	772
AoxI	GGCC	5 cut(s)	46, 731, 780, 876, 1166
ApaI	GGGCCC	1 cut(s)	735
ApoI	RAATTY	2 cut(s)	1120, 1419
ArsI	GACNNNNNNTTYG	6 cut(s)	195, 227, 258, 270, 290, 302
Asp700I	GAANNNNTTC	1 cut(s)	659
AspA2I	CCTAGG	2 cut(s)	335, 1048
AspLEI	GCGC	5 cut(s)	437, 599, 902, 904, 1274
AspS9I	GGNCC	6 cut(s)	731, 732, 877, 933, 960, 1045
AsuC2I	CCSGG	3 cut(s)	349, 1039, 1085
AsuHPI	GGTGA	5 cut(s)	142, 664, 1073, 1279, 1331
AvaI	CYCGRG	2 cut(s)	514, 535
AvaII	GGWCC	3 cut(s)	933, 960, 1045
AvrII	CCTAGG	2 cut(s)	335, 1048
BaeGI	GKGCMC	2 cut(s)	558, 735
BaeI	ACNNNNGTAYC	2 cut(s)	750, 783
BalI	TGGCCA	2 cut(s)	48, 1168
BamHI	GGATCC	1 cut(s)	988
BanI	GGYRCC	1 cut(s)	596
BanII	GRGCYC	4 cut(s)	343, 453, 735, 1060
BauI	CACGAG	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	912
BccI	CCATC	4 cut(s)	1047, 1231, 1300, 1310
BceAI	ACGGC	1 cut(s)	1162
BciT130I	CCWGG	2 cut(s)	39, 803
BclI	TGATCA	3 cut(s)	97, 304, 1414
BcnI	CCSGG	3 cut(s)	349, 1039, 1085
BcoDI	GTCTC	1 cut(s)	1337
BfaI	CTAG	7 cut(s)	20, 209, 336, 446, 573, 624, 1049
BfoI	RGCGCY	2 cut(s)	438, 600
BisI	GCNGC	2 cut(s)	438, 600
BlnI	CCTAGG	2 cut(s)	335, 1048
BlsI	GCNGC	2 cut(s)	439, 601
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	5 cut(s)	39, 349, 803, 1039, 1085
Bme18I	GGWCC	3 cut(s)	933, 960, 1045
BmeT110I	CYCGRG	2 cut(s)	514, 535
BmgBI	CACGTC	3 cut(s)	274, 388, 1164
BmgT120I	GGNCC	6 cut(s)	731, 732, 877, 933, 960, 1045
BmrFI	CCNGG	5 cut(s)	39, 349, 803, 1039, 1085
BmsI	GCATC	2 cut(s)	189, 469
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	926, 1151
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	3 cut(s)	349, 1039, 1085
BsaHI	GRCGYC	1 cut(s)	597
BsaJI	CCNNGG	7 cut(s)	37, 335, 639, 954, 993, 1048, 1368
BsaWI	WCCGGW	2 cut(s)	715, 772
BsaXI	ACNNNNNCTCC	4 cut(s)	847, 877, 1086, 1116
Bsc4I	CCNNNNNNNGG	9 cut(s)	38, 44, 447, 832, 955, 956, 1038, 1054, 1091
Bse3DI	GCAATG	1 cut(s)	1108
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	2 cut(s)	39, 803
BseDI	CCNNGG	7 cut(s)	37, 335, 639, 954, 993, 1048, 1368
BseGI	GGATG	3 cut(s)	428, 531, 1058
BseLI	CCNNNNNNNGG	9 cut(s)	38, 44, 447, 832, 955, 956, 1038, 1054, 1091
BseMI	GCAATG	1 cut(s)	1108
BseMII	CTCAG	2 cut(s)	329, 513
BsePI	GCGCGC	1 cut(s)	900
BseSI	GKGCMC	2 cut(s)	558, 735
BseYI	CCCAGC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	355
Bsh1236I	CGCG	3 cut(s)	467, 602, 902
Bsh1285I	CGRYCG	2 cut(s)	1038, 1092
BshFI	GGCC	5 cut(s)	48, 733, 782, 878, 1168
BshNI	GGYRCC	1 cut(s)	596
BsiEI	CGRYCG	2 cut(s)	1038, 1092
BsiHKAI	GWGCWC	1 cut(s)	912
BsiHKCI	CYCGRG	2 cut(s)	514, 535
BsiSI	CCGG	5 cut(s)	348, 716, 773, 1038, 1085
BslFI	GGGAC	3 cut(s)	14, 919, 973
BslI	CCNNNNNNNGG	9 cut(s)	38, 44, 447, 832, 955, 956, 1038, 1054, 1091
BsmAI	GTCTC	1 cut(s)	1337
BsmBI	CGTCTC	1 cut(s)	1337
BsmFI	GGGAC	3 cut(s)	14, 919, 973
BsmI	GAATGC	1 cut(s)	1198
BsnI	GGCC	5 cut(s)	48, 733, 782, 878, 1168
BsoBI	CYCGRG	2 cut(s)	514, 535
Bsp120I	GGGCCC	1 cut(s)	731
Bsp1286I	GDGCHC	6 cut(s)	343, 453, 558, 735, 912, 1060
Bsp13I	TCCGGA	1 cut(s)	772
Bsp143I	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
BspANI	GGCC	5 cut(s)	48, 733, 782, 878, 1168
BspCNI	CTCAG	2 cut(s)	328, 514
BspEI	TCCGGA	1 cut(s)	772
BspFNI	CGCG	3 cut(s)	467, 602, 902
BspHI	TCATGA	1 cut(s)	123
BspPI	GGATC	2 cut(s)	983, 996
BspT107I	GGYRCC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	1127
BsrDI	GCAATG	1 cut(s)	1108
BssECI	CCNNGG	7 cut(s)	37, 335, 639, 954, 993, 1048, 1368
BssHII	GCGCGC	1 cut(s)	900
BssMI	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
BssNI	GRCGYC	1 cut(s)	597
BssSI	CACGAG	1 cut(s)	762
BssT1I	CCWWGG	6 cut(s)	335, 639, 954, 993, 1048, 1368
Bst2BI	CACGAG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	39, 803
Bst4CI	ACNGT	2 cut(s)	64, 704
Bst6I	CTCTTC	6 cut(s)	110, 152, 169, 425, 743, 1325
BstACI	GRCGYC	1 cut(s)	597
BstAPI	GCANNNNNTGC	1 cut(s)	1150
BstC8I	GCNNGC	6 cut(s)	12, 898, 902, 917, 944, 1151
BstDEI	CTNAG	2 cut(s)	315, 522
BstF5I	GGATG	3 cut(s)	428, 531, 1058
BstFNI	CGCG	3 cut(s)	467, 602, 902
BstH2I	RGCGCY	2 cut(s)	438, 600
BstHHI	GCGC	5 cut(s)	437, 599, 902, 904, 1274
BstKTI	GATC	8 cut(s)	72, 100, 307, 606, 820, 991, 1024, 1417
BstMAI	GTCTC	1 cut(s)	1337
BstMBI	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
BstMCI	CGRYCG	2 cut(s)	1038, 1092
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 457, 855, 864, 916, 1150
BstNI	CCWGG	2 cut(s)	39, 803
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	5 cut(s)	37, 347, 801, 1037, 1083
BstSLI	GKGCMC	2 cut(s)	558, 735
BstUI	CGCG	3 cut(s)	467, 602, 902
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	988
BsuRI	GGCC	5 cut(s)	48, 733, 782, 878, 1168
BtrI	CACGTC	3 cut(s)	274, 388, 1164
BtsCI	GGATG	3 cut(s)	428, 531, 1058
BtsI	GCAGTG	1 cut(s)	1230
BtsIMutI	CAGTG	2 cut(s)	300, 1230
Cac8I	GCNNGC	6 cut(s)	12, 898, 902, 917, 944, 1151
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	5 cut(s)	437, 599, 902, 904, 1274
Cfr13I	GGNCC	6 cut(s)	731, 732, 877, 933, 960, 1045
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	3 cut(s)	519, 721, 1174
CviAII	CATG	5 cut(s)	124, 364, 442, 680, 859
CviQI	GTAC	3 cut(s)	519, 721, 1174
DdeI	CTNAG	2 cut(s)	315, 522
DinI	GGCGCC	1 cut(s)	598
DpnI	GATC	8 cut(s)	71, 99, 306, 605, 819, 990, 1023, 1416
DpnII	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
DraIII	CACNNNGTG	1 cut(s)	1150
EaeI	YGGCCR	2 cut(s)	46, 1166
Eam1104I	CTCTTC	6 cut(s)	110, 152, 169, 425, 743, 1325
EarI	CTCTTC	6 cut(s)	110, 152, 169, 425, 743, 1325
Eco130I	CCWWGG	6 cut(s)	335, 639, 954, 993, 1048, 1368
Eco24I	GRGCYC	4 cut(s)	343, 453, 735, 1060
Eco32I	GATATC	2 cut(s)	496, 799
Eco47I	GGWCC	3 cut(s)	933, 960, 1045
Eco57I	CTGAAG	1 cut(s)	767
Eco88I	CYCGRG	2 cut(s)	514, 535
EcoO109I	RGGNCCY	4 cut(s)	731, 732, 960, 1045
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	2 cut(s)	37, 801
EcoRV	GATATC	2 cut(s)	496, 799
EcoT14I	CCWWGG	6 cut(s)	335, 639, 954, 993, 1048, 1368
EcoT22I	ATGCAT	1 cut(s)	1198
EcoT38I	GRGCYC	4 cut(s)	343, 453, 735, 1060
EgeI	GGCGCC	1 cut(s)	598
EheI	GGCGCC	1 cut(s)	598
ErhI	CCWWGG	6 cut(s)	335, 639, 954, 993, 1048, 1368
Esp3I	CGTCTC	1 cut(s)	1337
FaeI	CATG	5 cut(s)	127, 367, 445, 683, 862
FalI	AAGNNNNNCTT	8 cut(s)	119, 151, 947, 979, 986, 1018, 1002, 1034
FaqI	GGGAC	3 cut(s)	14, 919, 973
FatI	CATG	5 cut(s)	123, 363, 441, 679, 858
FauI	CCCGC	3 cut(s)	908, 957, 1106
FbaI	TGATCA	3 cut(s)	97, 304, 1414
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	438, 600
FokI	GGATG	3 cut(s)	415, 518, 1065
FriOI	GRGCYC	4 cut(s)	343, 453, 735, 1060
Fsp4HI	GCNGC	2 cut(s)	438, 600
FspBI	CTAG	7 cut(s)	20, 209, 336, 446, 573, 624, 1049
GlaI	GCGC	5 cut(s)	436, 598, 901, 903, 1273
GluI	GCNGC	2 cut(s)	438, 600
GsaI	CCCAGC	1 cut(s)	35
GsuI	CTGGAG	2 cut(s)	926, 1151
HaeII	RGCGCY	2 cut(s)	438, 600
HaeIII	GGCC	5 cut(s)	48, 733, 782, 878, 1168
HapII	CCGG	5 cut(s)	348, 716, 773, 1038, 1085
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	5 cut(s)	437, 599, 902, 904, 1274
Hin1I	GRCGYC	1 cut(s)	597
Hin1II	CATG	5 cut(s)	127, 367, 445, 683, 862
Hin6I	GCGC	5 cut(s)	435, 597, 900, 902, 1272
HinP1I	GCGC	5 cut(s)	435, 597, 900, 902, 1272
HincII	GTYRAC	3 cut(s)	214, 244, 547
HindII	GTYRAC	3 cut(s)	214, 244, 547
HinfI	GANTC	5 cut(s)	161, 259, 323, 685, 742
HpaII	CCGG	5 cut(s)	348, 716, 773, 1038, 1085
HphI	GGTGA	5 cut(s)	142, 664, 1073, 1279, 1331
Hpy166II	GTNNAC	5 cut(s)	214, 244, 547, 655, 721
Hpy188I	TCNGA	8 cut(s)	322, 586, 667, 700, 747, 796, 1026, 1094
Hpy188III	TCNNGA	7 cut(s)	92, 124, 289, 535, 773, 853, 1130
Hpy8I	GTNNAC	5 cut(s)	214, 244, 547, 655, 721
Hpy99I	CGWCG	3 cut(s)	89, 472, 1165
HpyAV	CCTTC	5 cut(s)	145, 420, 587, 1004, 1036
HpyCH4III	ACNGT	2 cut(s)	64, 704
HpyCH4IV	ACGT	4 cut(s)	273, 387, 659, 1163
HpyCH4V	TGCA	3 cut(s)	372, 460, 1196
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 457, 855, 864, 916, 1150
HpyF3I	CTNAG	2 cut(s)	315, 522
HpySE526I	ACGT	4 cut(s)	273, 387, 659, 1163
Hsp92I	GRCGYC	1 cut(s)	597
Hsp92II	CATG	5 cut(s)	127, 367, 445, 683, 862
HspAI	GCGC	5 cut(s)	435, 597, 900, 902, 1272
KasI	GGCGCC	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	772
Ksp22I	TGATCA	3 cut(s)	97, 304, 1414
Kzo9I	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
LmnI	GCTCC	6 cut(s)	135, 667, 775, 855, 907, 1063
LweI	GCATC	2 cut(s)	189, 469
MaeI	CTAG	7 cut(s)	20, 209, 336, 446, 573, 624, 1049
MaeII	ACGT	4 cut(s)	273, 387, 659, 1163
MaeIII	GTNAC	2 cut(s)	260, 286
MalI	GATC	8 cut(s)	71, 99, 306, 605, 819, 990, 1023, 1416
MbiI	CCGCTC	1 cut(s)	1127
MboI	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
MflI	RGATCY	1 cut(s)	988
MhlI	GDGCHC	6 cut(s)	343, 453, 558, 735, 912, 1060
MlsI	TGGCCA	2 cut(s)	48, 1168
MluCI	AATT	3 cut(s)	503, 1120, 1419
MluNI	TGGCCA	2 cut(s)	48, 1168
Mly113I	GGCGCC	1 cut(s)	597
MlyI	GAGTC	3 cut(s)	155, 268, 332
MmeI	TCCRAC	3 cut(s)	678, 1072, 1188
Mox20I	TGGCCA	2 cut(s)	48, 1168
Mph1103I	ATGCAT	1 cut(s)	1198
MroI	TCCGGA	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	2 cut(s)	48, 1168
MseI	TTAA	4 cut(s)	510, 1233, 1296, 1423
MslI	CAYNNNNRTG	3 cut(s)	362, 377, 563
Msp20I	TGGCCA	2 cut(s)	48, 1168
MspA1I	CMGCKG	1 cut(s)	915
MspI	CCGG	5 cut(s)	348, 716, 773, 1038, 1085
MspR9I	CCNGG	5 cut(s)	39, 349, 803, 1039, 1085
Mva1269I	GAATGC	1 cut(s)	1198
MvaI	CCWGG	2 cut(s)	39, 803
MvnI	CGCG	3 cut(s)	467, 602, 902
MwoI	GCNNNNNNNGC	6 cut(s)	16, 457, 855, 864, 916, 1150
NarI	GGCGCC	1 cut(s)	597
NciI	CCSGG	3 cut(s)	349, 1039, 1085
NdeII	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
NlaIII	CATG	5 cut(s)	127, 367, 445, 683, 862
NmuCI	GTSAC	2 cut(s)	260, 286
NsiI	ATGCAT	1 cut(s)	1198
NspI	RCATGY	1 cut(s)	367
OliI	CACNNNNGTG	1 cut(s)	563
PaeR7I	CTCGAG	1 cut(s)	514
PagI	TCATGA	1 cut(s)	123
PauI	GCGCGC	1 cut(s)	900
PciI	ACATGT	1 cut(s)	363
PcsI	WCGNNNNNNNCGW	2 cut(s)	393, 1098
PctI	GAATGC	1 cut(s)	1198
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	2 cut(s)	685, 742
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	2 cut(s)	439, 601
PleI	GAGTC	3 cut(s)	155, 267, 331
PluTI	GGCGCC	1 cut(s)	600
PpsI	GAGTC	3 cut(s)	155, 267, 331
PpuMI	RGGWCCY	2 cut(s)	960, 1045
PscI	ACATGT	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	1245
Psp5II	RGGWCCY	2 cut(s)	960, 1045
Psp6I	CCWGG	2 cut(s)	37, 801
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	2 cut(s)	37, 801
PspOMI	GGGCCC	1 cut(s)	731
PspPI	GGNCC	6 cut(s)	731, 732, 877, 933, 960, 1045
PspPPI	RGGWCCY	2 cut(s)	960, 1045
PspXI	VCTCGAGB	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	988
PteI	GCGCGC	1 cut(s)	900
RsaI	GTAC	3 cut(s)	520, 722, 1175
RsaNI	GTAC	3 cut(s)	519, 721, 1174
RseI	CAYNNNNRTG	3 cut(s)	362, 377, 563
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	4 cut(s)	510, 1233, 1296, 1423
SatI	GCNGC	2 cut(s)	438, 600
Sau3AI	GATC	8 cut(s)	69, 97, 304, 603, 817, 988, 1021, 1414
Sau96I	GGNCC	6 cut(s)	731, 732, 877, 933, 960, 1045
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	3 cut(s)	155, 268, 332
ScrFI	CCNGG	5 cut(s)	39, 349, 803, 1039, 1085
SduI	GDGCHC	6 cut(s)	343, 453, 558, 735, 912, 1060
SfaNI	GCATC	2 cut(s)	189, 469
SfoI	GGCGCC	1 cut(s)	598
Sfr274I	CTCGAG	1 cut(s)	514
SinI	GGWCC	3 cut(s)	933, 960, 1045
SlaI	CTCGAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	3 cut(s)	362, 377, 563
SmlI	CTYRAG	2 cut(s)	90, 514
SmoI	CTYRAG	2 cut(s)	90, 514
Sse9I	AATT	3 cut(s)	503, 1120, 1419
SspDI	GGCGCC	1 cut(s)	596
SspMI	CTAG	7 cut(s)	20, 209, 336, 446, 573, 624, 1049
StyD4I	CCNGG	5 cut(s)	37, 347, 801, 1037, 1083
StyI	CCWWGG	6 cut(s)	335, 639, 954, 993, 1048, 1368
TaaI	ACNGT	2 cut(s)	64, 704
TaiI	ACGT	4 cut(s)	276, 390, 662, 1166
TaqI	TCGA	5 cut(s)	138, 213, 515, 612, 1190
TasI	AATT	3 cut(s)	503, 1120, 1419
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	2 cut(s)	440, 602
TfiI	GAWTC	2 cut(s)	685, 742
Tru1I	TTAA	4 cut(s)	510, 1233, 1296, 1423
Tru9I	TTAA	4 cut(s)	510, 1233, 1296, 1423
TscAI	CASTG	2 cut(s)	307, 1230
TseFI	GTSAC	2 cut(s)	260, 286
Tsp45I	GTSAC	2 cut(s)	260, 286
TspDTI	ATGAA	6 cut(s)	17, 97, 140, 178, 516, 1386
TspGWI	ACGGA	1 cut(s)	1265
TspRI	CASTG	2 cut(s)	307, 1230
Van91I	CCANNNNNTGG	1 cut(s)	44
VpaK11BI	GGWCC	3 cut(s)	933, 960, 1045
XapI	RAATTY	2 cut(s)	1120, 1419
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XhoI	CTCGAG	1 cut(s)	514
XmaJI	CCTAGG	2 cut(s)	335, 1048
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	659
XspI	CTAG	7 cut(s)	20, 209, 336, 446, 573, 624, 1049
ZrmI	AGTACT	1 cut(s)	520
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.