Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004856.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

45810 .. 46376

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004856.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgggaagttttgacgaagaccaggtgaaggagatagcctatgcgctggagcacagtggacttcgattcctgtggtccctgcggcagcccccagcaaaggggaaggttgcttaccctagtgactatgcagattaccggggagtcttgcctgaagggttccttgatcggactactgggattgggaaggttataggatgcgctccagaagtagttatcttgggccaccctgcaattggagggttcgtatctcattgtgggtggaattctatgcttgagagtctatggtgcggtgtgcccgtcggcacgttgccaatgtatgcagagcaacacttgaatgcttttgagatggtgagagaattgggattggcagtggaagtgagtatggcttataggaagggcagtatgaatgcacaagatatagagcgagggattaggcaagtgatggagcatgatagtgatataaggaagagggtgaaggagatgagtgaaatgagcaagacagccttgatggatggtggttcctcttactcttcgttggggcgttttgttgagcagattttccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

188

Amino Acids

20.88

Weight (kDa)

5.75

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	82, 288
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	28, 97, 98, 233
AgsI	TTSAA	1 cut(s)	334
AjnI	CCWGG	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	2 cut(s)	46, 200
AspS9I	GGNCC	2 cut(s)	75, 220
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	37, 361, 484
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	297
BarI	GAAGNNNNNNTAC	2 cut(s)	95, 127
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	4 cut(s)	340, 436, 502, 506
BciT130I	CCWGG	1 cut(s)	23
BcnI	CCSGG	1 cut(s)	137
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	2 cut(s)	83, 86
BlsI	GCNGC	2 cut(s)	84, 87
Bme1390I	CCNGG	2 cut(s)	23, 137
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 220
BmiI	GGNNCC	3 cut(s)	77, 158, 520
BmrFI	CCNGG	2 cut(s)	23, 137
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	2 cut(s)	68, 186
BpuEI	CTTGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	228, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 97, 98, 233
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	200, 517
BseLI	CCNNNNNNNGG	4 cut(s)	28, 97, 98, 233
BseNI	ACTGG	1 cut(s)	178
BseSI	GKGCMC	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	28, 97, 98, 233
BsmFI	GGGAC	1 cut(s)	61
BsmI	GAATGC	2 cut(s)	340, 412
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	54, 297
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	82, 288
BspANI	GGCC	1 cut(s)	222
BspLI	GGNNCC	3 cut(s)	77, 158, 520
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	461, 535
BstF5I	GGATG	2 cut(s)	200, 517
BstHHI	GCGC	2 cut(s)	46, 200
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	21, 135
BstSLI	GKGCMC	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	200, 517
BtsI	GCAGTG	1 cut(s)	375
BtsIMutI	CAGTG	2 cut(s)	61, 375
CfoI	GCGC	2 cut(s)	46, 200
Cfr13I	GGNCC	2 cut(s)	75, 220
CsiI	ACCWGGT	1 cut(s)	21
CviAII	CATG	1 cut(s)	449
CviJI	RGCY	5 cut(s)	38, 88, 222, 386, 503
CviKI_1	RGCY	5 cut(s)	38, 88, 222, 386, 503
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	461, 535
EarI	CTCTTC	2 cut(s)	461, 535
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	452
FalI	AAGNNNNNCTT	4 cut(s)	144, 176, 488, 520
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	83, 86
FokI	GGATG	2 cut(s)	207, 524
Fsp4HI	GCNGC	2 cut(s)	83, 86
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	2 cut(s)	45, 199
GluI	GCNGC	2 cut(s)	83, 86
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	2 cut(s)	68, 186
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	136
HhaI	GCGC	2 cut(s)	46, 200
Hin1II	CATG	1 cut(s)	452
Hin6I	GCGC	2 cut(s)	44, 198
HinP1I	GCGC	2 cut(s)	44, 198
HinfI	GANTC	3 cut(s)	66, 141, 277
HpaII	CCGG	1 cut(s)	136
HphI	GGTGA	3 cut(s)	37, 361, 484
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	1 cut(s)	59
Hpy99I	CGWCG	1 cut(s)	302
HpyAV	CCTTC	6 cut(s)	22, 97, 146, 178, 388, 469
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	128, 230, 320, 410
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	1 cut(s)	452
HspAI	GCGC	2 cut(s)	44, 198
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	3 cut(s)	49, 205, 445
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	185
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	29, 478, 522
MfeI	CAATTG	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	54, 297
MluCI	AATT	3 cut(s)	231, 262, 356
MlyI	GAGTC	2 cut(s)	150, 286
MnlI	CCTC	4 cut(s)	230, 419, 462, 532
MslI	CAYNNNNRTG	2 cut(s)	333, 453
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	2 cut(s)	23, 137
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	2 cut(s)	340, 412
MvaI	CCWGG	1 cut(s)	23
NciI	CCSGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	452
NlaIV	GGNNCC	3 cut(s)	77, 158, 520
NmuCI	GTSAC	1 cut(s)	119
PctI	GAATGC	2 cut(s)	340, 412
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	84, 87
PleI	GAGTC	2 cut(s)	149, 285
PpsI	GAGTC	2 cut(s)	149, 285
Psp6I	CCWGG	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	77, 158, 520
PspPI	GGNCC	2 cut(s)	75, 220
RseI	CAYNNNNRTG	2 cut(s)	333, 453
SatI	GCNGC	2 cut(s)	83, 86
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	2 cut(s)	75, 220
SchI	GAGTC	2 cut(s)	150, 286
ScrFI	CCNGG	2 cut(s)	23, 137
SduI	GDGCHC	2 cut(s)	54, 297
SetI	ASST	4 cut(s)	27, 108, 189, 308
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	333, 453
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	3 cut(s)	231, 262, 356
SsiI	CCGC	2 cut(s)	82, 288
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	21, 135
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	1 cut(s)	64
TasI	AATT	3 cut(s)	231, 262, 356
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	1 cut(s)	66
TscAI	CASTG	2 cut(s)	61, 375
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	419
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	61, 375
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	230
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.