Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

37564320 .. 37564889

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00313800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAAGCTTCAGTGAAGACCAGGTGAAAGAGATTGCCCGCGCATTGGAGCATGCAGGGTTTCGGTTCTTGTGGTCCCTACGTCAGCCTCCACCAAAGGGAAAGATTGGAATGCCCAGCGACTATGCCGATCACACAGGGGTGTTACCTGAAGGGTTTCTTGATCGAACGGCTGGGGTAGGAAAAGTTATAGGGTGGGCGCCACAAGTTGCCATATTGGCCCACCCGGCAGTAGGAGGTTTCGTCTCTCACTGTGGGTGGAATTCCACTCTGGAGAGCTTGTGGTTTGGAGTGCCGGTTGCCACGTGGCCCTTGTATGCCGAGCAACAAGCAAATGCATTTCAGCTAGTTACGGAACTAGGGATAGCCGTGGAAATTGATATGAGTTATAGGAAGGATGGTCCAGTTGTTGTGACTGCCGAGAAGATTGAGAGTGGAATAAAGGAGCTAATGGAGCTTGATAGTGATGTAAGGAAGAGGGTGAAACAGATGAGTGACAGTAGCAAGAAAGCTTTGATGGATGGGGGGACCTCATATGTTGCGTTGGGACACTTCATTGATCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

189

Amino Acids

20.63

Weight (kDa)

5.52

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	4 - 129	9.9e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccII	CGCG	1 cut(s)	42
AciI	CCGC	1 cut(s)	40
AcsI	RAATTY	2 cut(s)	262, 564
AcuI	CTGAAG	1 cut(s)	171
AcvI	CACGTG	1 cut(s)	306
AcyI	GRCGYC	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	46, 98, 233
AjnI	CCWGG	1 cut(s)	21
AleI	CACNNNNGTG	1 cut(s)	140
AluBI	AGCT	6 cut(s)	9, 279, 346, 448, 457, 512
AluI	AGCT	6 cut(s)	9, 279, 346, 448, 457, 512
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	2 cut(s)	219, 308
ApoI	RAATTY	2 cut(s)	262, 564
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	2 cut(s)	44, 202
AspS9I	GGNCC	5 cut(s)	75, 220, 309, 401, 528
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	37, 493
AvaII	GGWCC	3 cut(s)	75, 401, 528
BanI	GGYRCC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	306
BbsI	GAAGAC	1 cut(s)	24
BccI	CCATC	3 cut(s)	392, 511, 515
BceAI	ACGGC	2 cut(s)	186, 353
BciT130I	CCWGG	1 cut(s)	23
BclI	TGATCA	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	347, 359
BfoI	RGCGCY	1 cut(s)	203
BglI	GCCNNNNNGGC	2 cut(s)	218, 227
Bme1390I	CCNGG	2 cut(s)	23, 227
Bme18I	GGWCC	3 cut(s)	75, 401, 528
BmgT120I	GGNCC	5 cut(s)	75, 220, 309, 401, 528
BmiI	GGNNCC	3 cut(s)	77, 201, 529
BmrFI	CCNGG	2 cut(s)	23, 227
BpiI	GAAGAC	1 cut(s)	24
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	1 cut(s)	227
BsaAI	YACGTR	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	6 cut(s)	228, 258, 266, 282, 296, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 98, 233
Bse118I	RCCGGY	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	403, 526
BseLI	CCNNNNNNNGG	3 cut(s)	46, 98, 233
BseNI	ACTGG	1 cut(s)	404
BseYI	CCCAGC	2 cut(s)	116, 173
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	221, 310
BshNI	GGYRCC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	227, 296
BslFI	GGGAC	3 cut(s)	61, 541, 561
BslI	CCNNNNNNNGG	3 cut(s)	46, 98, 233
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	3 cut(s)	61, 541, 561
BsmI	GAATGC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	221, 310
Bsp143I	GATC	3 cut(s)	130, 163, 559
BspACI	CCGC	1 cut(s)	40
BspANI	GGCC	2 cut(s)	221, 310
BspFNI	CGCG	1 cut(s)	42
BspLI	GGNNCC	3 cut(s)	77, 201, 529
BspT107I	GGYRCC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	130, 163, 559
BssNI	GRCGYC	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	254, 500
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	200
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	2 cut(s)	40, 54
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	403, 526
BstFNI	CGCG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	44, 202
BstKTI	GATC	3 cut(s)	133, 166, 562
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	130, 163, 559
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 227, 454
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	2 cut(s)	21, 225
BstUI	CGCG	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	221, 310
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	403, 526
BtsIMutI	CAGTG	2 cut(s)	19, 250
Cac8I	GCNNGC	2 cut(s)	40, 54
CfoI	GCGC	2 cut(s)	44, 202
Cfr10I	RCCGGY	1 cut(s)	295
Cfr13I	GGNCC	5 cut(s)	75, 220, 309, 401, 528
CsiI	ACCWGGT	1 cut(s)	21
CviAII	CATG	1 cut(s)	53
DinI	GGCGCC	1 cut(s)	201
DpnI	GATC	3 cut(s)	132, 165, 561
DpnII	GATC	3 cut(s)	130, 163, 559
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco47I	GGWCC	3 cut(s)	75, 401, 528
Eco57I	CTGAAG	1 cut(s)	171
Eco72I	CACGTG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	528
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	340
EgeI	GGCGCC	1 cut(s)	201
EheI	GGCGCC	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	1 cut(s)	56
FaiI	YATR	9 cut(s)	54, 126, 191, 215, 318, 383, 390, 535, 537
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	3 cut(s)	61, 541, 561
FatI	CATG	1 cut(s)	52
FauI	CCCGC	1 cut(s)	47
FauNDI	CATATG	1 cut(s)	535
FbaI	TGATCA	1 cut(s)	559
FokI	GGATG	2 cut(s)	410, 533
FspBI	CTAG	2 cut(s)	347, 359
GlaI	GCGC	2 cut(s)	43, 201
GsaI	CCCAGC	2 cut(s)	120, 177
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	221, 310
HapII	CCGG	2 cut(s)	227, 296
HhaI	GCGC	2 cut(s)	44, 202
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	42, 200
HinP1I	GCGC	2 cut(s)	42, 200
HindIII	AAGCTT	2 cut(s)	7, 510
HpaII	CCGG	2 cut(s)	227, 296
HphI	GGTGA	2 cut(s)	37, 493
Hpy188III	TCNNGA	2 cut(s)	161, 272
HpyAV	CCTTC	2 cut(s)	146, 388
HpyCH4III	ACNGT	2 cut(s)	254, 500
HpyCH4IV	ACGT	2 cut(s)	82, 305
HpyCH4V	TGCA	2 cut(s)	56, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 227, 454
HpySE526I	ACGT	2 cut(s)	82, 305
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	42, 200
KasI	GGCGCC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	559
Kzo9I	GATC	3 cut(s)	130, 163, 559
LmnI	GCTCC	3 cut(s)	49, 445, 454
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	2 cut(s)	347, 359
MaeII	ACGT	2 cut(s)	82, 305
MaeIII	GTNAC	4 cut(s)	144, 349, 412, 494
MalI	GATC	3 cut(s)	132, 165, 561
MboI	GATC	3 cut(s)	130, 163, 559
MboII	GAAGA	3 cut(s)	29, 436, 487
MluCI	AATT	3 cut(s)	262, 375, 564
Mly113I	GGCGCC	1 cut(s)	200
MnlI	CCTC	4 cut(s)	99, 230, 471, 541
Mph1103I	ATGCAT	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	568
MslI	CAYNNNNRTG	1 cut(s)	140
MspI	CCGG	2 cut(s)	227, 296
MspR9I	CCNGG	2 cut(s)	23, 227
Mva1269I	GAATGC	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	23
MvnI	CGCG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	218, 227, 454
NarI	GGCGCC	1 cut(s)	200
NciI	CCSGG	1 cut(s)	227
NdeI	CATATG	1 cut(s)	535
NdeII	GATC	3 cut(s)	130, 163, 559
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	3 cut(s)	77, 201, 529
NmeAIII	GCCGAG	2 cut(s)	346, 445
NmuCI	GTSAC	2 cut(s)	412, 494
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	56
OliI	CACNNNNGTG	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	56
PctI	GAATGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	156
PluTI	GGCGCC	1 cut(s)	203
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	528
Psp6I	CCWGG	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	306
PspFI	CCCAGC	2 cut(s)	116, 173
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	3 cut(s)	77, 201, 529
PspPI	GGNCC	5 cut(s)	75, 220, 309, 401, 528
PspPPI	RGGWCCY	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	568
Sau3AI	GATC	3 cut(s)	130, 163, 559
Sau96I	GGNCC	5 cut(s)	75, 220, 309, 401, 528
ScrFI	CCNGG	2 cut(s)	23, 227
SexAI	ACCWGGT	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	201
SinI	GGWCC	3 cut(s)	75, 401, 528
SmiMI	CAYNNNNRTG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	56
Sse9I	AATT	3 cut(s)	262, 375, 564
SsiI	CCGC	1 cut(s)	40
SspDI	GGCGCC	1 cut(s)	199
SspMI	CTAG	2 cut(s)	347, 359
StyD4I	CCNGG	2 cut(s)	21, 225
TaaI	ACNGT	2 cut(s)	254, 500
TaiI	ACGT	2 cut(s)	85, 308
TaqI	TCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	262, 375, 564
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TscAI	CASTG	2 cut(s)	19, 257
TseFI	GTSAC	2 cut(s)	412, 494
Tsp45I	GTSAC	2 cut(s)	412, 494
TspDTI	ATGAA	1 cut(s)	544
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	2 cut(s)	19, 257
VpaK11BI	GGWCC	3 cut(s)	75, 401, 528
XapI	RAATTY	2 cut(s)	262, 564
XceI	RCATGY	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	2 cut(s)	347, 359
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.