Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

4525119 .. 4525688

Gene Structure 570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAAGTTTCGGTGAGGCCCAGGTGAAAGAGATAGCTTGTGCGCTGGAGCATAGCGGGCAGCGGTTTTTGTGGTCCCTACGCCGGCCCCCACCTAAAGGCAAGATGGCTATGCCAAGCGACTATGCGGATCTAAACGCAGTTTTGCCGGAAGGGTTTCTTAATCGGACAGCTCCGATTGGGAAGGTGATAGGTTGGGCCCCGCAAGCGGCCATTCTGGCCCATCCGGCGACCGGTGGGTTTGTATCACATTGCGGGTGGAATTCCACGTTGGAAAGTTTATGGAATGGGGTGCCGATTGCCACGTGGCCAATGTATGCAGAGCAAAACCATAATGCCTTTCAACTGGTGAAGGAATTGGGATTGGCTGTGGAGATTAAGATGGATTATAGGAAGGACAGCGACATGGTGGTGAGTGCAGTAGATATAGAAAGAGGGATAAGTCAAGTGATGGAGCTCGATGGTGATGTACGGAAAAGAGTGAAGGAGATGAGTGAAAAGAGCAAGAAAGCATTGGTGGATGGTGGTTCTTCTTACTCTTCATTAGGGCGTTTTATTAATCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

190

Amino Acids

20.75

Weight (kDa)

6.91

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	6 - 135	1.5e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	6 cut(s)	57, 64, 128, 203, 209, 255
AclWI	GGATC	1 cut(s)	138
AcoI	YGGCCR	2 cut(s)	210, 308
AcsI	RAATTY	2 cut(s)	262, 564
AcvI	CACGTG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	4 cut(s)	84, 98, 208, 233
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	344
AjnI	CCWGG	1 cut(s)	21
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	3 cut(s)	38, 173, 457
AluI	AGCT	3 cut(s)	38, 173, 457
Alw21I	GWGCWC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	6 cut(s)	18, 86, 198, 210, 219, 308
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	2 cut(s)	262, 564
AseI	ATTAAT	1 cut(s)	558
AsiGI	ACCGGT	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	156
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	6 cut(s)	19, 75, 87, 198, 199, 220
AsuHPI	GGTGA	6 cut(s)	26, 37, 199, 361, 424, 476
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	202
BalI	TGGCCA	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	2 cut(s)	202, 459
BbrPI	CACGTG	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	6 cut(s)	100, 231, 376, 445, 455, 515
BciT130I	CCWGG	1 cut(s)	23
BglI	GCCNNNNNGGC	2 cut(s)	218, 227
BisI	GCNGC	2 cut(s)	62, 210
BlsI	GCNGC	2 cut(s)	63, 211
Bme1390I	CCNGG	1 cut(s)	23
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	6 cut(s)	19, 75, 87, 198, 199, 220
BmiI	GGNNCC	5 cut(s)	77, 89, 200, 201, 294
BmrFI	CCNGG	1 cut(s)	23
BpmI	CTGGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	4 cut(s)	84, 98, 208, 233
Bse118I	RCCGGY	2 cut(s)	84, 233
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	223, 526
BseLI	CCNNNNNNNGG	4 cut(s)	84, 98, 208, 233
BseMI	GCAATG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	351
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	438
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	6 cut(s)	20, 88, 200, 212, 221, 310
BshNI	GGYRCC	1 cut(s)	292
BshTI	ACCGGT	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	459
BsiSI	CCGG	4 cut(s)	85, 149, 227, 234
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	84, 98, 208, 233
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	6 cut(s)	20, 88, 200, 212, 221, 310
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	2 cut(s)	202, 459
Bsp143I	GATC	1 cut(s)	130
BspACI	CCGC	6 cut(s)	57, 64, 128, 203, 209, 255
BspANI	GGCC	6 cut(s)	20, 88, 200, 212, 221, 310
BspLI	GGNNCC	5 cut(s)	77, 89, 200, 201, 294
BspPI	GGATC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	2 cut(s)	84, 233
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	2 cut(s)	84, 233
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	1 cut(s)	130
Bst2UI	CCWGG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	544
BstBAI	YACGTR	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	59, 86, 207
BstF5I	GGATG	2 cut(s)	223, 526
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 206, 218, 227
BstNI	CCWGG	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	6 cut(s)	20, 88, 200, 212, 221, 310
BtsCI	GGATG	2 cut(s)	223, 526
Cac8I	GCNNGC	3 cut(s)	59, 86, 207
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	2 cut(s)	84, 233
Cfr13I	GGNCC	6 cut(s)	19, 75, 87, 198, 199, 220
Csp6I	GTAC	1 cut(s)	470
CspAI	ACCGGT	1 cut(s)	233
CviAII	CATG	1 cut(s)	406
CviQI	GTAC	1 cut(s)	470
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
EaeI	YGGCCR	2 cut(s)	210, 308
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
Ecl136II	GAGCTC	1 cut(s)	457
Eco24I	GRGCYC	2 cut(s)	202, 459
Eco47I	GGWCC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	457
Eco72I	CACGTG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	202, 459
FaeI	CATG	1 cut(s)	409
FaiI	YATR	9 cut(s)	54, 113, 126, 283, 318, 333, 390, 407, 428
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	405
FauI	CCCGC	3 cut(s)	50, 210, 248
Fnu4HI	GCNGC	2 cut(s)	62, 210
FokI	GGATG	2 cut(s)	210, 533
FriOI	GRGCYC	2 cut(s)	202, 459
Fsp4HI	GCNGC	2 cut(s)	62, 210
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	2 cut(s)	62, 210
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	6 cut(s)	20, 88, 200, 212, 221, 310
HapII	CCGG	4 cut(s)	85, 149, 227, 234
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	409
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HpaII	CCGG	4 cut(s)	85, 149, 227, 234
HphI	GGTGA	6 cut(s)	26, 37, 199, 361, 424, 476
Hpy188I	TCNGA	2 cut(s)	168, 177
HpyAV	CCTTC	5 cut(s)	146, 178, 346, 388, 478
HpyCH4IV	ACGT	2 cut(s)	269, 305
HpyCH4V	TGCA	2 cut(s)	320, 419
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 206, 218, 227
HpySE526I	ACGT	2 cut(s)	269, 305
Hsp92II	CATG	1 cut(s)	409
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	84
KroNI	GCCGGC	1 cut(s)	86
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	3 cut(s)	49, 178, 454
LpnPI	CCDG	9 cut(s)	8, 32, 35, 98, 162, 203, 240, 247, 332
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	2 cut(s)	269, 305
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	2 cut(s)	522, 531
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	202, 459
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	3 cut(s)	262, 356, 564
MluNI	TGGCCA	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	10, 428
Mox20I	TGGCCA	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	4 cut(s)	162, 378, 558, 568
MslI	CAYNNNNRTG	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	4 cut(s)	85, 149, 227, 234
MspR9I	CCNGG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	4 cut(s)	58, 206, 218, 227
NaeI	GCCGGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	130
NgoMIV	GCCGGC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	5 cut(s)	77, 89, 200, 201, 294
PdiI	GCCGGC	1 cut(s)	86
PdmI	GAANNNNTTC	1 cut(s)	156
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	2 cut(s)	63, 211
PmaCI	CACGTG	1 cut(s)	306
PmlI	CACGTG	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	558
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	21
PspCI	CACGTG	1 cut(s)	306
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	77, 89, 200, 201, 294
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	6 cut(s)	19, 75, 87, 198, 199, 220
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	162, 378, 558, 568
SatI	GCNGC	2 cut(s)	62, 210
Sau3AI	GATC	1 cut(s)	130
Sau96I	GGNCC	6 cut(s)	19, 75, 87, 198, 199, 220
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	2 cut(s)	202, 459
SetI	ASST	9 cut(s)	27, 40, 97, 175, 189, 196, 272, 308, 459
SfiI	GGCCNNNNNGGCC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	75
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	262, 356, 564
SsiI	CCGC	6 cut(s)	57, 64, 128, 203, 209, 255
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	21
TaiI	ACGT	2 cut(s)	272, 308
TaqI	TCGA	1 cut(s)	459
TasI	AATT	3 cut(s)	262, 356, 564
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	4 cut(s)	162, 378, 558, 568
Tru9I	TTAA	4 cut(s)	162, 378, 558, 568
TseI	GCWGC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	531
TspGWI	ACGGA	1 cut(s)	487
VpaK11BI	GGWCC	1 cut(s)	75
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	2 cut(s)	262, 564
XmnI	GAANNNNTTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.