Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

70648282 .. 70648788

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTCTTTTATCTGATGCCGAGATCCCTCCCGTACGTAGGACCCTTACTTAACCTTAACAGTAATGAAAGTCGTTGGAAGCAGAAGTATGATACCTTGAAATGGCTTGATGATCAGCCTCCATTGTTTGTAGTGTTCTTGTGCTTTAGAAGTATGGGAAGCTTTGGCGAGGACCAGGTGAAAGAGATTGCCCACGCCTTAGAGCACGCGGGCCATCAATTCTTGTTGTCCTTATGTCAGTCTTCACCCACTGGAAGAATTTCTTCTCCAAGTGACTACGATGACCACACTGGAGTCTTGCCCAAAGGTCGAACAATTGGGATTGGAAAGGTCATAGGCTGGGCCCCCCAAGTTGCCATCTTGGCTCACCCATCTGTGAGAGGATTTGTATCCCATTGTGGGTGGAATTCCACTCTTGAAAGTCTTTGGCAAGGTGTGCCCATTTCCACATGGCCATTGTACGCAAAGCAACTGCTTAACGTGTTTCAGCTGGTGAAGGAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

7.77

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	44 - 164	4e-19	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	209
AciI	CCGC	1 cut(s)	209
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	452
AcsI	RAATTY	2 cut(s)	258, 406
AfaI	GTAC	2 cut(s)	35, 461
AfiI	CCNNNNNNNGG	3 cut(s)	38, 102, 399
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	2 cut(s)	100, 419
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	162, 490
AluI	AGCT	2 cut(s)	162, 490
Alw21I	GWGCWC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	3 cut(s)	211, 342, 452
ApaI	GGGCCC	1 cut(s)	346
ApoI	RAATTY	2 cut(s)	258, 406
Asp700I	GAANNNNTTC	2 cut(s)	259, 262
AspS9I	GGNCC	5 cut(s)	41, 172, 211, 342, 343
AsuHPI	GGTGA	4 cut(s)	190, 237, 359, 505
AvaII	GGWCC	2 cut(s)	41, 172
BaeGI	GKGCMC	2 cut(s)	346, 441
BalI	TGGCCA	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	207
BccI	CCATC	3 cut(s)	222, 365, 379
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	400
BclI	TGATCA	1 cut(s)	112
BfuI	GTATCC	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	362
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	41, 172
BmgT120I	GGNCC	5 cut(s)	41, 172, 211, 342, 343
BmiI	GGNNCC	3 cut(s)	43, 344, 345
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 102, 399
Bse1I	ACTGG	2 cut(s)	256, 295
Bse8I	GATNNNNATC	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	176
BseJI	GATNNNNATC	1 cut(s)	388
BseLI	CCNNNNNNNGG	3 cut(s)	38, 102, 399
BseNI	ACTGG	2 cut(s)	256, 295
BseSI	GKGCMC	2 cut(s)	346, 441
BseYI	CCCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	213, 344, 454
BsiHKAI	GWGCWC	1 cut(s)	207
BsiWI	CGTACG	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	38, 102, 399
BsnI	GGCC	3 cut(s)	213, 344, 454
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	207, 346, 441
Bsp143I	GATC	2 cut(s)	23, 112
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	3 cut(s)	213, 344, 454
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	3 cut(s)	43, 344, 345
BspPI	GGATC	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	256, 295
BssMI	GATC	2 cut(s)	23, 112
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	436
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	2 cut(s)	207, 211
BstDEI	CTNAG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	2 cut(s)	26, 115
BstMBI	GATC	2 cut(s)	23, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 436
BstNI	CCWGG	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	174
BstSLI	GKGCMC	2 cut(s)	346, 441
BstSNI	TACGTA	1 cut(s)	37
BstUI	CGCG	1 cut(s)	209
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	213, 344, 454
BtsIMutI	CAGTG	2 cut(s)	249, 288
Cac8I	GCNNGC	2 cut(s)	207, 211
Cfr13I	GGNCC	5 cut(s)	41, 172, 211, 342, 343
CsiI	ACCWGGT	1 cut(s)	174
Csp6I	GTAC	2 cut(s)	34, 460
CviAII	CATG	1 cut(s)	450
CviJI	RGCY	9 cut(s)	106, 118, 162, 213, 339, 344, 365, 454, 490
CviKI_1	RGCY	9 cut(s)	106, 118, 162, 213, 339, 344, 365, 454, 490
CviQI	GTAC	2 cut(s)	34, 460
DdeI	CTNAG	1 cut(s)	199
DpnI	GATC	2 cut(s)	25, 114
DpnII	GATC	2 cut(s)	23, 112
EaeI	YGGCCR	1 cut(s)	452
Eco105I	TACGTA	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	41, 172
EcoO109I	RGGNCCY	2 cut(s)	41, 343
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	346
FaeI	CATG	1 cut(s)	453
FaiI	YATR	5 cut(s)	90, 155, 235, 335, 451
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FatI	CATG	1 cut(s)	449
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	1 cut(s)	112
FriOI	GRGCYC	1 cut(s)	346
GsaI	CCCAGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	213, 344, 454
Hin1II	CATG	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	1 cut(s)	294
HphI	GGTGA	4 cut(s)	190, 237, 359, 505
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	416
HpyAV	CCTTC	1 cut(s)	490
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	36, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 436
HpyF3I	CTNAG	1 cut(s)	199
HpySE526I	ACGT	2 cut(s)	36, 480
Hsp92II	CATG	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	23, 112
LpnPI	CCDG	6 cut(s)	161, 188, 237, 276, 325, 476
LweI	GCATC	1 cut(s)	6
MabI	ACCWGGT	1 cut(s)	174
MaeII	ACGT	2 cut(s)	36, 480
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	25, 114
MboI	GATC	2 cut(s)	23, 112
MboII	GAAGA	3 cut(s)	234, 255, 267
MfeI	CAATTG	1 cut(s)	315
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	207, 346, 441
MlsI	TGGCCA	1 cut(s)	454
MluCI	AATT	5 cut(s)	218, 258, 315, 406, 500
MluNI	TGGCCA	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	4 cut(s)	38, 129, 163, 374
Mox20I	TGGCCA	1 cut(s)	454
MroXI	GAANNNNTTC	2 cut(s)	259, 262
MscI	TGGCCA	1 cut(s)	454
MseI	TTAA	3 cut(s)	51, 57, 477
Msp20I	TGGCCA	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	490
MspR9I	CCNGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	362, 436
NdeII	GATC	2 cut(s)	23, 112
NlaIII	CATG	1 cut(s)	453
NlaIV	GGNNCC	3 cut(s)	43, 344, 345
NmeAIII	GCCGAG	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	272
PdmI	GAANNNNTTC	2 cut(s)	259, 262
Pfl23II	CGTACG	1 cut(s)	33
PleI	GAGTC	1 cut(s)	302
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	174
PspFI	CCCAGC	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	174
PspLI	CGTACG	1 cut(s)	33
PspN4I	GGNNCC	3 cut(s)	43, 344, 345
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	5 cut(s)	41, 172, 211, 342, 343
PspPPI	RGGWCCY	1 cut(s)	41
PsuI	RGATCY	1 cut(s)	23
PvuII	CAGCTG	1 cut(s)	490
RsaI	GTAC	2 cut(s)	35, 461
RsaNI	GTAC	2 cut(s)	34, 460
SaqAI	TTAA	3 cut(s)	51, 57, 477
Sau3AI	GATC	2 cut(s)	23, 112
Sau96I	GGNCC	5 cut(s)	41, 172, 211, 342, 343
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	3 cut(s)	207, 346, 441
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	41, 172
SnaBI	TACGTA	1 cut(s)	37
Sse9I	AATT	5 cut(s)	218, 258, 315, 406, 500
SsiI	CCGC	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	62
TaiI	ACGT	2 cut(s)	39, 483
TaqI	TCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	218, 258, 315, 406, 500
Tru1I	TTAA	3 cut(s)	51, 57, 477
Tru9I	TTAA	3 cut(s)	51, 57, 477
TscAI	CASTG	2 cut(s)	256, 295
TseFI	GTSAC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	81
TspRI	CASTG	2 cut(s)	256, 295
VpaK11BI	GGWCC	2 cut(s)	41, 172
XapI	RAATTY	2 cut(s)	258, 406
XmnI	GAANNNNTTC	2 cut(s)	259, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.