Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000234.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

55258 .. 56776

Gene Structure 1519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000234.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgaagcaatcggcagagctagtgttcatcccaaccccaggcatcggccacctcgtggctacggtggaggtcgcaaagctccttctgtctcgagatgatcaactcttcatcaccgtcctcgtcataaagttcccgttcagcacagacggcaccgatgcctacgttgagtccttcgcggactcttccatatcacatcggatccagttcatcaacctcccacagcagaatatggagacacaaggtaatagcaccatcaacttcttgaacttcattgacaatcagcaaaccaacgttaaagatgttgtcgccaaactcatcgagtccgagaccaagaatcgactcgccgggtttgtcatcgacatgttttgtacctctatgatcgacgtagccaacgaattaggggttcctacctacatgtttttcacgtccagcgcctccatgctcgggctcatgttccaccttcaagcacttcgtgatgatcacaacaaggactgcattgagttcaaggactcaactgctgatttggtggtcccgagttactccaaccccttgccagctgctagaatcttacctagtatccttttcgaaaaggagaccggcaacaggttcctcaacttggccaaaaggtttagagatgtcaaggtgccgaagcaacagcagcttgtggtgctggcttctccaaggctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

229

Amino Acids

25.65

Weight (kDa)

5.57

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	149, 643
AccB7I	CCANNNNNTGG	1 cut(s)	55
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	176
AclI	AACGTT	1 cut(s)	291
AclWI	GGATC	2 cut(s)	193, 206
AcoI	YGGCCR	2 cut(s)	46, 618
AdeI	CACNNNGTG	2 cut(s)	55, 473
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 444, 603, 616
AflIII	ACRYGT	2 cut(s)	360, 414
AgsI	TTSAA	3 cut(s)	265, 464, 505
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	4 cut(s)	19, 79, 557, 661
AluI	AGCT	4 cut(s)	19, 79, 557, 661
Alw26I	GTCTC	4 cut(s)	93, 227, 320, 587
AlwI	GGATC	2 cut(s)	193, 206
Ama87I	CYCGRG	3 cut(s)	90, 443, 532
AoxI	GGCC	2 cut(s)	46, 618
ApeKI	GCWGC	2 cut(s)	557, 658
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	585
AvaI	CYCGRG	3 cut(s)	90, 443, 532
AvaII	GGWCC	1 cut(s)	529
BalI	TGGCCA	1 cut(s)	620
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	2 cut(s)	149, 643
BanII	GRGCYC	1 cut(s)	450
BauI	CACGAG	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	544, 670
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	1 cut(s)	587
BclI	TGATCA	2 cut(s)	97, 478
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	4 cut(s)	93, 227, 320, 587
BfaI	CTAG	3 cut(s)	20, 561, 573
BfoI	RGCGCY	1 cut(s)	435
BfuI	GTATCC	1 cut(s)	587
BisI	GCNGC	2 cut(s)	558, 659
BlsI	GCNGC	2 cut(s)	559, 660
Bme1390I	CCNGG	2 cut(s)	39, 346
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	3 cut(s)	90, 443, 532
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	6 cut(s)	151, 200, 405, 531, 608, 645
BmrFI	CCNGG	2 cut(s)	39, 346
BmsI	GCATC	2 cut(s)	51, 145
Bpu14I	TTCGAA	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	2 cut(s)	320, 587
BsaJI	CCNNGG	2 cut(s)	37, 680
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 444, 603, 616
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	37, 680
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 444, 603, 616
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	544, 670
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	48, 620
BshNI	GGYRCC	2 cut(s)	149, 643
BsiHKCI	CYCGRG	3 cut(s)	90, 443, 532
BsiSI	CCGG	2 cut(s)	345, 597
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	6 cut(s)	38, 44, 55, 444, 603, 616
BsmAI	GTCTC	4 cut(s)	93, 227, 320, 587
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	48, 620
Bso31I	GGTCTC	2 cut(s)	320, 587
BsoBI	CYCGRG	3 cut(s)	90, 443, 532
Bsp119I	TTCGAA	1 cut(s)	585
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	97, 198, 378, 478
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	48, 620
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	6 cut(s)	151, 200, 405, 531, 608, 645
BspPI	GGATC	2 cut(s)	193, 206
BspT104I	TTCGAA	1 cut(s)	585
BspT107I	GGYRCC	2 cut(s)	149, 643
BspTNI	GGTCTC	2 cut(s)	320, 587
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	2 cut(s)	37, 680
BssMI	GATC	4 cut(s)	97, 198, 378, 478
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	680
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	64, 115
Bst6I	CTCTTC	2 cut(s)	110, 187
BstBI	TTCGAA	1 cut(s)	585
BstC8I	GCNNGC	2 cut(s)	555, 672
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	4 cut(s)	100, 201, 381, 481
BstMAI	GTCTC	4 cut(s)	93, 227, 320, 587
BstMBI	GATC	4 cut(s)	97, 198, 378, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 658, 667
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	364, 418
BstSCI	CCNGG	2 cut(s)	37, 344
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	544, 670
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	587
BsuRI	GGCC	2 cut(s)	48, 620
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	2 cut(s)	555, 672
CfoI	GCGC	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	4 cut(s)	361, 415, 439, 451
CviQI	GTAC	1 cut(s)	369
DpnI	GATC	4 cut(s)	99, 200, 380, 480
DpnII	GATC	4 cut(s)	97, 198, 378, 478
DraIII	CACNNNGTG	2 cut(s)	55, 473
EaeI	YGGCCR	2 cut(s)	46, 618
Eam1104I	CTCTTC	2 cut(s)	110, 187
EarI	CTCTTC	2 cut(s)	110, 187
Eco130I	CCWWGG	1 cut(s)	680
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	2 cut(s)	320, 587
Eco47I	GGWCC	1 cut(s)	529
Eco88I	CYCGRG	3 cut(s)	90, 443, 532
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	680
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	680
FaeI	CATG	4 cut(s)	364, 418, 442, 454
FaiI	YATR	8 cut(s)	125, 188, 230, 362, 377, 416, 440, 452
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	360, 414, 438, 450
FbaI	TGATCA	2 cut(s)	97, 478
Fnu4HI	GCNGC	2 cut(s)	558, 659
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	558, 659
FspBI	CTAG	3 cut(s)	20, 561, 573
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	558, 659
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	2 cut(s)	48, 620
HapII	CCGG	2 cut(s)	345, 597
HhaI	GCGC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	364, 418, 442, 454
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	7 cut(s)	167, 179, 320, 334, 339, 509, 564
HpaII	CCGG	2 cut(s)	345, 597
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	198, 325
Hpy188III	TCNNGA	5 cut(s)	90, 92, 262, 473, 532
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	3 cut(s)	92, 181, 470
HpyCH4III	ACNGT	2 cut(s)	64, 115
HpyCH4IV	ACGT	4 cut(s)	162, 291, 384, 425
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 658, 667
HpySE526I	ACGT	4 cut(s)	162, 291, 384, 425
Hsp92II	CATG	4 cut(s)	364, 418, 442, 454
HspAI	GCGC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	97, 478
Kzo9I	GATC	4 cut(s)	97, 198, 378, 478
LmnI	GCTCC	1 cut(s)	84
LpnPI	CCDG	9 cut(s)	24, 51, 215, 358, 442, 567, 589, 610, 656
Lsp1109I	GCAGC	2 cut(s)	544, 670
LweI	GCATC	2 cut(s)	51, 145
MaeI	CTAG	3 cut(s)	20, 561, 573
MaeII	ACGT	4 cut(s)	162, 291, 384, 425
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	99, 200, 380, 480
MboI	GATC	4 cut(s)	97, 198, 378, 478
MboII	GAAGA	2 cut(s)	97, 174
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	1 cut(s)	395
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	5 cut(s)	173, 176, 329, 333, 503
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	7 cut(s)	61, 62, 128, 224, 382, 445, 620
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	294
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	345, 597
MspR9I	CCNGG	2 cut(s)	39, 346
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	147, 658, 667
NciI	CCSGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	97, 198, 378, 478
NlaIII	CATG	4 cut(s)	364, 418, 442, 454
NlaIV	GGNNCC	6 cut(s)	151, 200, 405, 531, 608, 645
NspI	RCATGY	2 cut(s)	364, 418
NspV	TTCGAA	1 cut(s)	585
PaeR7I	CTCGAG	1 cut(s)	90
PciI	ACATGT	2 cut(s)	360, 414
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 390
PfeI	GAWTC	2 cut(s)	334, 564
PflMI	CCANNNNNTGG	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	559, 660
PleI	GAGTC	5 cut(s)	173, 175, 328, 333, 503
PpsI	GAGTC	5 cut(s)	173, 175, 328, 333, 503
PscI	ACATGT	2 cut(s)	360, 414
Psp1406I	AACGTT	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	6 cut(s)	151, 200, 405, 531, 608, 645
PspPI	GGNCC	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	558, 659
Sau3AI	GATC	4 cut(s)	97, 198, 378, 478
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	5 cut(s)	173, 176, 329, 333, 503
ScrFI	CCNGG	2 cut(s)	39, 346
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	2 cut(s)	51, 145
Sfr274I	CTCGAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	585
SinI	GGWCC	1 cut(s)	529
SlaI	CTCGAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	3 cut(s)	20, 561, 573
StyD4I	CCNGG	2 cut(s)	37, 344
StyI	CCWWGG	1 cut(s)	680
TaaI	ACNGT	2 cut(s)	64, 115
TaiI	ACGT	4 cut(s)	165, 294, 387, 428
TaqI	TCGA	6 cut(s)	91, 318, 337, 357, 381, 585
TasI	AATT	1 cut(s)	395
TfiI	GAWTC	2 cut(s)	334, 564
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseI	GCWGC	2 cut(s)	557, 658
TspDTI	ATGAA	5 cut(s)	16, 17, 97, 196, 259
Van91I	CCANNNNNTGG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	529
XceI	RCATGY	2 cut(s)	364, 418
XhoI	CTCGAG	1 cut(s)	90
XspI	CTAG	3 cut(s)	20, 561, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.