Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Reverse (-)

4525897 .. 4526535

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAGAGACCAGCACAACTAGTTTTCGTTCCCTCCCCGGTTATCGGCCACATCGTATCAACGATCGAGATTGCAGAGCAACTCGTTGCTCGGGACGACCAACTGCTTATCCCAGTCCTCGTCATGAACCTTCCCTACGACCAACCATTCACCAACACTGACTCTTCAATCTCTCACCGCATCAACTTCGTCAACCTCCCCGAAGCCCAACTGGACAAACAAGAAGCCATCCCCAAACACGGGTCCTTGACCATAATCCTCGTCGAAAATCACAAAACTCACATCAGAGACGCCGTTGTCAACTTACTCTCTGAGTCAGATCAGTCTGAGTCGGTGTCGAAGCCTCGGCTTGCCGGGTTCTTGCTCGACTTTTTATGCGCAACCCTAGTTGACGTGGCTGACGAATTTAAGGTTCCCTCCTACGTGTTCTTCCCCACCAACGCTTCGCTGCTCGCACTTTTGTTCCATTTTCAATTGCTTCGCGACGAGGGCGGCATAGATATAACTGAGTTTACGCGCTCGAGCGCTGAGTTGGCCGTCCCGTGTTTCATCAACCCTTACCCTACCGCAGTCTTGCCCGGTACGTTTGCGGACAAAGAGATCGACCGGATCAATCCTCAACTCTACCAGCAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

213

Amino Acids

23.64

Weight (kDa)

4.85

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
Acc16I	TGCGCA	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	622
AccII	CGCG	2 cut(s)	483, 517
AciI	CCGC	4 cut(s)	178, 492, 567, 590
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	2 cut(s)	46, 534
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	1 cut(s)	583
AfeI	AGCGCT	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	44, 239, 240
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	168, 473
AhlI	ACTAGT	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	617
Ama87I	CYCGRG	2 cut(s)	90, 520
Aor51HI	AGCGCT	1 cut(s)	526
AoxI	GGCC	2 cut(s)	46, 534
ApeKI	GCWGC	1 cut(s)	448
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	3 cut(s)	380, 519, 527
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	3 cut(s)	38, 355, 579
AsuHPI	GGTGA	2 cut(s)	142, 167
AvaI	CYCGRG	2 cut(s)	90, 520
AvaII	GGWCC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	278, 521
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BcnI	CCSGG	3 cut(s)	38, 355, 579
BcoDI	GTCTC	1 cut(s)	282
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 386
BfoI	RGCGCY	1 cut(s)	528
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	449, 493
BlsI	GCNGC	2 cut(s)	450, 494
Bme1390I	CCNGG	3 cut(s)	38, 355, 579
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	2 cut(s)	90, 520
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	244, 414
BmrFI	CCNGG	3 cut(s)	38, 355, 579
BmrI	ACTGGG	1 cut(s)	107
BmsI	GCATC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	107
BpuMI	CCSGG	3 cut(s)	38, 355, 579
BsaAI	YACGTR	1 cut(s)	424
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	36, 344
BsaWI	WCCGGW	1 cut(s)	606
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 239, 240
Bse1I	ACTGG	2 cut(s)	113, 216
BseDI	CCNNGG	2 cut(s)	36, 344
BseGI	GGATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	3 cut(s)	44, 239, 240
BseMII	CTCAG	4 cut(s)	303, 318, 498, 519
BseNI	ACTGG	2 cut(s)	113, 216
BseXI	GCAGC	1 cut(s)	435
Bsh1236I	CGCG	2 cut(s)	483, 517
Bsh1285I	CGRYCG	2 cut(s)	66, 607
BshFI	GGCC	2 cut(s)	48, 536
BsiEI	CGRYCG	2 cut(s)	66, 607
BsiHKCI	CYCGRG	2 cut(s)	90, 520
BsiSI	CCGG	4 cut(s)	38, 354, 579, 607
BslFI	GGGAC	2 cut(s)	107, 524
BslI	CCNNNNNNNGG	3 cut(s)	44, 239, 240
BsmAI	GTCTC	1 cut(s)	282
BsmBI	CGTCTC	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	107, 524
BsnI	GGCC	2 cut(s)	48, 536
BsoBI	CYCGRG	2 cut(s)	90, 520
Bsp143I	GATC	4 cut(s)	63, 319, 600, 609
Bsp68I	TCGCGA	1 cut(s)	483
BspACI	CCGC	4 cut(s)	178, 492, 567, 590
BspANI	GGCC	2 cut(s)	48, 536
BspCNI	CTCAG	4 cut(s)	304, 319, 499, 520
BspFNI	CGCG	2 cut(s)	483, 517
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	244, 414
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	617
BsrI	ACTGG	2 cut(s)	113, 216
BssECI	CCNNGG	2 cut(s)	36, 344
BssMI	GATC	4 cut(s)	63, 319, 600, 609
BssNI	GRCGYC	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	169
BstACI	GRCGYC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	2 cut(s)	351, 453
BstDEI	CTNAG	4 cut(s)	312, 327, 507, 528
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	2 cut(s)	483, 517
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	380, 519, 527
BstKTI	GATC	4 cut(s)	66, 322, 603, 612
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	4 cut(s)	63, 319, 600, 609
BstMCI	CGRYCG	2 cut(s)	66, 607
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 533
BstSCI	CCNGG	3 cut(s)	36, 353, 577
BstUI	CGCG	2 cut(s)	483, 517
BstV1I	GCAGC	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	48, 536
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	156
BtuMI	TCGCGA	1 cut(s)	483
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	351, 453
CciI	TCATGA	1 cut(s)	123
CfoI	GCGC	3 cut(s)	380, 519, 527
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	582
CviAII	CATG	1 cut(s)	124
CviJI	RGCY	7 cut(s)	48, 206, 227, 343, 349, 398, 536
CviKI_1	RGCY	7 cut(s)	48, 206, 227, 343, 349, 398, 536
CviQI	GTAC	1 cut(s)	582
DdeI	CTNAG	4 cut(s)	312, 327, 507, 528
DpnI	GATC	4 cut(s)	65, 321, 602, 611
DpnII	GATC	4 cut(s)	63, 319, 600, 609
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	2 cut(s)	46, 534
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	526
Eco88I	CYCGRG	2 cut(s)	90, 520
EcoO109I	RGGNCCY	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	1 cut(s)	127
FaiI	YATR	6 cut(s)	125, 254, 376, 497, 503, 637
FaqI	GGGAC	2 cut(s)	107, 524
FatI	CATG	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	449, 493
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	449, 493
FspBI	CTAG	2 cut(s)	20, 386
FspI	TGCGCA	1 cut(s)	379
GlaI	GCGC	3 cut(s)	379, 518, 526
GluI	GCNGC	2 cut(s)	449, 493
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	2 cut(s)	48, 536
HapII	CCGG	4 cut(s)	38, 354, 579, 607
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	3 cut(s)	380, 519, 527
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	1 cut(s)	127
Hin6I	GCGC	3 cut(s)	378, 517, 525
HinP1I	GCGC	3 cut(s)	378, 517, 525
HincII	GTYRAC	3 cut(s)	193, 301, 391
HindII	GTYRAC	3 cut(s)	193, 301, 391
HinfI	GANTC	3 cut(s)	161, 314, 329
HpaII	CCGG	4 cut(s)	38, 354, 579, 607
HphI	GGTGA	2 cut(s)	142, 167
Hpy166II	GTNNAC	4 cut(s)	193, 301, 391, 513
Hpy188I	TCNGA	4 cut(s)	287, 313, 319, 328
Hpy188III	TCNNGA	4 cut(s)	67, 92, 124, 482
Hpy8I	GTNNAC	4 cut(s)	193, 301, 391, 513
Hpy99I	CGWCG	2 cut(s)	266, 488
HpyAV	CCTTC	1 cut(s)	140
HpyCH4IV	ACGT	3 cut(s)	393, 423, 584
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 533
HpyF3I	CTNAG	4 cut(s)	312, 327, 507, 528
HpySE526I	ACGT	3 cut(s)	393, 423, 584
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	1 cut(s)	127
HspAI	GCGC	3 cut(s)	378, 517, 525
Kzo9I	GATC	4 cut(s)	63, 319, 600, 609
LpnPI	CCDG	8 cut(s)	24, 51, 126, 197, 367, 592, 617, 620
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	2 cut(s)	20, 386
MaeII	ACGT	3 cut(s)	393, 423, 584
MalI	GATC	4 cut(s)	65, 321, 602, 611
MboI	GATC	4 cut(s)	63, 319, 600, 609
MboII	GAAGA	3 cut(s)	16, 156, 421
MfeI	CAATTG	1 cut(s)	473
MluCI	AATT	2 cut(s)	404, 473
MlyI	GAGTC	3 cut(s)	155, 323, 338
MnlI	CCTC	8 cut(s)	43, 128, 206, 269, 354, 427, 481, 627
MseI	TTAA	1 cut(s)	408
MspI	CCGG	4 cut(s)	38, 354, 579, 607
MspR9I	CCNGG	3 cut(s)	38, 355, 579
MunI	CAATTG	1 cut(s)	473
MvnI	CGCG	2 cut(s)	483, 517
MwoI	GCNNNNNNNGC	2 cut(s)	489, 533
NciI	CCSGG	3 cut(s)	38, 355, 579
NdeII	GATC	4 cut(s)	63, 319, 600, 609
NlaIII	CATG	1 cut(s)	127
NlaIV	GGNNCC	2 cut(s)	244, 414
NmeAIII	GCCGAG	1 cut(s)	325
NruI	TCGCGA	1 cut(s)	483
NsbI	TGCGCA	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	520
PagI	TCATGA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 399
PkrI	GCNGC	2 cut(s)	450, 494
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	3 cut(s)	155, 322, 337
PpsI	GAGTC	3 cut(s)	155, 322, 337
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	244, 414
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	520
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PvuI	CGATCG	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	483
RsaI	GTAC	1 cut(s)	583
RsaNI	GTAC	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	2 cut(s)	449, 493
Sau3AI	GATC	4 cut(s)	63, 319, 600, 609
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	155, 323, 338
ScrFI	CCNGG	3 cut(s)	38, 355, 579
SetI	ASST	7 cut(s)	132, 198, 396, 414, 426, 587, 636
SfaNI	GCATC	1 cut(s)	189
Sfr274I	CTCGAG	1 cut(s)	520
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	520
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	404, 473
SsiI	CCGC	4 cut(s)	178, 492, 567, 590
SspMI	CTAG	2 cut(s)	20, 386
StyD4I	CCNGG	3 cut(s)	36, 353, 577
TaiI	ACGT	3 cut(s)	396, 426, 587
TaqI	TCGA	6 cut(s)	66, 264, 338, 366, 521, 603
TasI	AATT	2 cut(s)	404, 473
TauI	GCSGC	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	1 cut(s)	448
TspDTI	ATGAA	3 cut(s)	17, 140, 538
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	404
XhoI	CTCGAG	1 cut(s)	520
XspI	CTAG	2 cut(s)	20, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.