Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034645.1

Orthogroup ID

OG0000209

Physical Location & Seq

Genomic Coordinates Forward (+)

80 .. 412

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034645.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgggacccggtgccttcttcaaaatatttgttgaaaatcagaaaccgaacattacagacgtggtcaccaagctcaccgagtctcggtccgagtccaagcctcgacttgccgggtttgtcattgacatgttctgcaccaccatgatcaacgtggccaatgaatttggggttcctacttacgtctttttcacgtccaacgcagcgtctcttgggttcttgctacacctccaagccatttgtgatgaggaaaacaaggacgtttctgagttcttggagtcgggagccgatctgtctctgccgagtttgataatccgctgcctcatggagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008194 GO:0008300 GO:0009056 GO:0009628 GO:0009651 GO:0009687 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016020 GO:0016042 GO:0016054 GO:0016107 GO:0016115 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0033993 GO:0035251 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043290 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046164 GO:0046345 GO:0046395 GO:0046527 GO:0050896 GO:0071704 GO:0072329 GO:0080043 GO:0080044 GO:0080046 GO:0097305 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1902644

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

4.58

Isoelectric Point (pI)

41.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21760 AT3G21780 AT3G21790 AT3G21800 AT4G15260 AT4G15270 AT4G15270 AT4G15270 AT4G15280 AT4G15280
fragaria_vesca	FvH4_3g10810 FvH4_6g39330 FvH4_6g39350 FvH4_6g39380 FvH4_6g39401 FvH4_6g39410 FvH4_6g39430
malus_domestica	MD09G1140700.v1.1 MD09G1141100.v1.1 MD09G1141200.v1.1 MD09G1141300.v1.1 MD09G1141500.v1.1 MD09G1141600.v1.1 MD09G1141700.v1.1 MD09G1141800.v1.1 MD17G1129500.v1.1 MD17G1129700.v1.1
prunus_persica	Prupe.3G184600_v2.0.a1 Prupe.3G184700_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184800_v2.0.a1 Prupe.3G184900_v2.0.a1 Prupe.3G185000_v2.0.a1 Prupe.3G185100_v2.0.a1 Prupe.3G185200_v2.0.a1 Prupe.7G013100_v2.0.a1
pyrus_communis	pycom09g06130 pycom09g06140 pycom09g06170 pycom09g06180 pycom09g06200 pycom17g12200 pycom17g12230
rosa_chinensis	RchiOBHm_Chr1g0339921 RchiOBHm_Chr1g0339941 RchiOBHm_Chr1g0339951 RchiOBHm_Chr1g0339981 RchiOBHm_Chr1g0340051 RchiOBHm_Chr1g0340061 RchiOBHm_Chr2g0153251 RchiOBHm_Chr2g0153261 RchiOBHm_Chr2g0153271 RchiOBHm_Chr2g0153291 RchiOBHm_Chr2g0153321 RchiOBHm_Chr2g0153381 RchiOBHm_Chr2g0153451 RchiOBHm_Chr2g0153461 RchiOBHm_Chr2g0153471
rosa_laevigata	RLG00000013864 RLG00000020668 RLG00000020669 RLG00000020688 RLG00000020689 RLG00000020691 RLG00000020692 RLG00000020694 RLG00000020695 RLG00000020696 RLG00000020697 RLG00000020698 RLG00000029250 RLG00000029251 RLG00000029254 RLG00000029256 RLG00000029257
rosa_multiflora	Rmu_co8175810.1_g000001 Rmu_co8338271.1_g000001 Rmu_co8340327.1_g000001 Rmu_sc0000160.1_g000002 Rmu_sc0000160.1_g000005 Rmu_sc0000160.1_g000017 Rmu_sc0000234.1_g000001 Rmu_sc0000234.1_g000002 Rmu_sc0000234.1_g000010 Rmu_sc0000442.1_g000011 Rmu_sc0000442.1_g000013 Rmu_sc0000442.1_g000014 Rmu_sc0003810.1_g000001 Rmu_sc0003810.1_g000004 Rmu_sc0004856.1_g000012 Rmu_sc0004856.1_g000013 Rmu_sc0004856.1_g000014 Rmu_sc0004856.1_g000016 Rmu_sc0007649.1_g000007 Rmu_sc0007649.1_g000008 Rmu_sc0007649.1_g000011 Rmu_sc0018149.1_g000001 Rmu_sc0034645.1_g000001 Rmu_sc0034646.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057370 Rroxscaffold_2G00095010 Rroxscaffold_2G00095020 Rroxscaffold_2G00095030 Rroxscaffold_2G00095050 Rroxscaffold_2G00095070 Rroxscaffold_4G00313800 Rroxscaffold_4G00313810 Rroxscaffold_4G00313820 Rroxscaffold_4G00313840 Rroxscaffold_4G00313900 Rroxscaffold_4G00313910
rosa_rugosa	Rorug01G0137300.1 Rorug01G0137500.1 Rorug01G0137700.1 Rorug01G0137800.1 Rorug01G0138000.1 Rorug01G0138300.1 Rorug02G0437700.1 Rorug02G0437800 Rorug02G0437900 Rorug02G0437900 Rorug02G0437900 Rorug02G0438000 Rorug02G0438000 Rorug02G0438100 Rorug02G0438200
rosa_samantha	Rh2AG500800 Rh2AG501000 Rh2AG501100 Rh2AG501200 Rh2AG501300 Rh2AG502000 Rh2AG502100 Rh2AG502200 Rh2BG512300 Rh2BG512500 Rh2CG487200 Rh2CG487300 Rh2CG487400 Rh2CG487900 Rh2CG488000 Rh2CG488100
rosa_wichuraiana	Rw0G022390 Rw1G012850 Rw1G012860 Rw2G041100 Rw2G041120 Rw2G041130 Rw2G041140 Rw2G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AciI	CCGC	1 cut(s)	313
AcoI	YGGCCR	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	2 cut(s)	22, 35
AjiI	CACGTC	2 cut(s)	61, 192
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	3 cut(s)	87, 210, 297
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	200, 315
ApoI	RAATTY	1 cut(s)	161
AspS9I	GGNCC	2 cut(s)	5, 87
AsuC2I	CCSGG	2 cut(s)	9, 112
AsuHPI	GGTGA	2 cut(s)	58, 67
AvaII	GGWCC	2 cut(s)	5, 87
BalI	TGGCCA	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	212, 302
BclI	TGATCA	1 cut(s)	144
BcnI	CCSGG	2 cut(s)	9, 112
BcoDI	GTCTC	3 cut(s)	87, 210, 297
BisI	GCNGC	2 cut(s)	201, 316
BlsI	GCNGC	2 cut(s)	202, 317
Bme1390I	CCNGG	2 cut(s)	9, 112
Bme18I	GGWCC	2 cut(s)	5, 87
BmgBI	CACGTC	2 cut(s)	61, 192
BmgT120I	GGNCC	2 cut(s)	5, 87
BmiI	GGNNCC	5 cut(s)	6, 7, 13, 171, 283
BmrFI	CCNGG	2 cut(s)	9, 112
BpuMI	CCSGG	2 cut(s)	9, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	212, 302
BsgI	GTGCAG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	9, 111
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	3 cut(s)	87, 210, 297
BsmBI	CGTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	155
Bsp143I	GATC	2 cut(s)	144, 286
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	5 cut(s)	6, 7, 13, 171, 283
BspT107I	GGYRCC	1 cut(s)	11
BssMI	GATC	2 cut(s)	144, 286
BstDEI	CTNAG	1 cut(s)	264
BstEII	GGTNACC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	147, 289
BstMAI	GTCTC	3 cut(s)	87, 210, 297
BstMBI	GATC	2 cut(s)	144, 286
BstNSI	RCATGY	1 cut(s)	130
BstPI	GGTNACC	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	7, 110
BstV1I	GCAGC	2 cut(s)	212, 302
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	2 cut(s)	61, 192
Cfr13I	GGNCC	2 cut(s)	5, 87
CpoI	CGGWCCG	1 cut(s)	87
CseI	GACGC	1 cut(s)	192
CspI	CGGWCCG	1 cut(s)	87
CviAII	CATG	3 cut(s)	127, 142, 322
CviJI	RGCY	5 cut(s)	73, 100, 155, 233, 284
CviKI_1	RGCY	5 cut(s)	73, 100, 155, 233, 284
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	2 cut(s)	146, 288
DpnII	GATC	2 cut(s)	144, 286
EaeI	YGGCCR	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	5, 87
Eco91I	GGTNACC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	210
FaeI	CATG	3 cut(s)	130, 145, 325
FaiI	YATR	3 cut(s)	128, 143, 323
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	3 cut(s)	126, 141, 321
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	201, 316
Fsp4HI	GCNGC	2 cut(s)	201, 316
GluI	GCNGC	2 cut(s)	201, 316
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	9, 111
HgaI	GACGC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	130, 145, 325
HinfI	GANTC	3 cut(s)	80, 92, 275
HpaII	CCGG	2 cut(s)	9, 111
HphI	GGTGA	2 cut(s)	58, 67
Hpy188I	TCNGA	3 cut(s)	42, 91, 265
Hpy188III	TCNNGA	1 cut(s)	279
HpyAV	CCTTC	1 cut(s)	25
HpyCH4IV	ACGT	5 cut(s)	60, 150, 180, 191, 258
HpyCH4V	TGCA	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	5 cut(s)	60, 150, 180, 191, 258
Hsp92II	CATG	3 cut(s)	130, 145, 325
KflI	GGGWCCC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	144, 286
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	2 cut(s)	22, 124
Lsp1109I	GCAGC	2 cut(s)	212, 302
MaeII	ACGT	5 cut(s)	60, 150, 180, 191, 258
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	146, 288
MboI	GATC	2 cut(s)	144, 286
MboII	GAAGA	1 cut(s)	10
MlsI	TGGCCA	1 cut(s)	155
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	3 cut(s)	89, 101, 284
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	4 cut(s)	111, 236, 238, 329
Mox20I	TGGCCA	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	2 cut(s)	125, 140
Msp20I	TGGCCA	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	9, 111
MspR9I	CCNGG	2 cut(s)	9, 112
NciI	CCSGG	2 cut(s)	9, 112
NdeII	GATC	2 cut(s)	144, 286
NlaIII	CATG	3 cut(s)	130, 145, 325
NlaIV	GGNNCC	5 cut(s)	6, 7, 13, 171, 283
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	130
PciI	ACATGT	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	202, 317
PleI	GAGTC	3 cut(s)	88, 100, 283
PpsI	GAGTC	3 cut(s)	88, 100, 283
PpuMI	RGGWCCY	1 cut(s)	5
PscI	ACATGT	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	5
PspEI	GGTNACC	1 cut(s)	64
PspN4I	GGNNCC	5 cut(s)	6, 7, 13, 171, 283
PspPI	GGNCC	2 cut(s)	5, 87
PspPPI	RGGWCCY	1 cut(s)	5
PsyI	GACNNNGTC	1 cut(s)	62
RseI	CAYNNNNRTG	2 cut(s)	125, 140
Rsr2I	CGGWCCG	1 cut(s)	87
RsrII	CGGWCCG	1 cut(s)	87
SatI	GCNGC	2 cut(s)	201, 316
Sau3AI	GATC	2 cut(s)	144, 286
Sau96I	GGNCC	2 cut(s)	5, 87
SchI	GAGTC	3 cut(s)	89, 101, 284
ScrFI	CCNGG	2 cut(s)	9, 112
SetI	ASST	7 cut(s)	63, 75, 153, 183, 194, 228, 261
SinI	GGWCC	2 cut(s)	5, 87
SmiMI	CAYNNNNRTG	2 cut(s)	125, 140
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	313
SspI	AATATT	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	7, 110
TaiI	ACGT	5 cut(s)	63, 153, 183, 194, 261
TaqI	TCGA	1 cut(s)	103
TaqII	GACCGA	1 cut(s)	75
TasI	AATT	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	200, 315
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	174
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	2 cut(s)	5, 87
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.