Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

23863530 .. 23864048

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGTAAACGAGCAACTTATGGAGCTGGTCATGTCGATCCAATAGCTGCGACAAATCCTGGACTCGTCTATGAAATGGACAAAGCAGATCACATTGCTTTTCTCTGCGGCTTGAATTACACTGCGGATACCCTTGCACTCATAGCTGGTGAAACAATTACTTGCACTAAAGAAAACAAAACCTTACCAAGAAACCTCAACTATCCTTCAATGTCAGCTCAATTGCGAAGATCTGAAAGCTCACTCACAGTGACTTTCAACAGAACTGTCACTAATGTTGGAACGCCCAACTCAACATACAAATCAAAGGTGGTCTTAAATCAAGGATCAAAGCTCAACGTCAAGGTCACACCTAGTGTTCTGTCTTTTAAGACGGTGAGTGAAAAGAAGTCTTTCACGGTGACTGTCACAGGTAGCGATAGCGATCCAAAACTGCCTTCATCTGCAAATCTAATATGGTCTGATGGCACACATAATGTGAGAAGCCCTATTGTTATTTATATTGATGGTGCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0010035 GO:0010038 GO:0016787 GO:0017171 GO:0019538 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

172

Amino Acids

18.53

Weight (kDa)

9.23

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	65 - 166	6.5e-28	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	2 cut(s)	108, 125
AclWI	GGATC	3 cut(s)	32, 334, 419
AdeI	CACNNNGTG	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	115, 210, 259
AjnI	CCWGG	1 cut(s)	58
AjuI	GAANNNNNNNTTGG	2 cut(s)	421, 453
AluBI	AGCT	6 cut(s)	26, 47, 146, 218, 240, 334
AluI	AGCT	6 cut(s)	26, 47, 146, 218, 240, 334
AlwI	GGATC	3 cut(s)	32, 334, 419
ApeKI	GCWGC	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	392
AsuHPI	GGTGA	3 cut(s)	161, 388, 412
BanI	GGYRCC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	2 cut(s)	458, 500
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	48, 109
BlsI	GCNGC	2 cut(s)	49, 110
Bme1390I	CCNGG	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	60
BseJI	GATNNNNATC	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	34
BshNI	GGYRCC	1 cut(s)	509
Bsp143I	GATC	5 cut(s)	37, 88, 230, 326, 424
BspACI	CCGC	2 cut(s)	108, 125
BspLI	GGNNCC	1 cut(s)	511
BspPI	GGATC	3 cut(s)	32, 334, 419
BspT107I	GGYRCC	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	93
BssMI	GATC	5 cut(s)	37, 88, 230, 326, 424
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	250, 268, 376, 400, 406
BstKTI	GATC	5 cut(s)	40, 91, 233, 329, 427
BstMBI	GATC	5 cut(s)	37, 88, 230, 326, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	121
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	2 cut(s)	120, 255
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	8 cut(s)	26, 47, 111, 146, 218, 240, 334, 486
CviKI_1	RGCY	8 cut(s)	26, 47, 111, 146, 218, 240, 334, 486
DpnI	GATC	5 cut(s)	39, 90, 232, 328, 426
DpnII	GATC	5 cut(s)	37, 88, 230, 326, 424
DraIII	CACNNNGTG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	35
FaiI	YATR	8 cut(s)	21, 33, 72, 143, 298, 457, 474, 501
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	48, 109
Fsp4HI	GCNGC	2 cut(s)	48, 109
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	48, 109
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	1 cut(s)	63
HphI	GGTGA	3 cut(s)	161, 388, 412
Hpy166II	GTNNAC	1 cut(s)	8
Hpy188I	TCNGA	2 cut(s)	235, 463
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	2 cut(s)	216, 447
HpyCH4III	ACNGT	5 cut(s)	250, 268, 376, 400, 406
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	137, 165, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	37, 88, 230, 326, 424
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	12, 45, 72, 132, 396
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	5 cut(s)	250, 268, 346, 400, 406
MalI	GATC	5 cut(s)	39, 90, 232, 328, 426
MboI	GATC	5 cut(s)	37, 88, 230, 326, 424
MboII	GAAGA	1 cut(s)	240
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	230
MluCI	AATT	3 cut(s)	115, 156, 221
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	2 cut(s)	317, 369
MspR9I	CCNGG	1 cut(s)	60
MunI	CAATTG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	5 cut(s)	37, 88, 230, 326, 424
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	5 cut(s)	250, 268, 346, 400, 406
PdmI	GAANNNNTTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	2 cut(s)	49, 110
PleI	GAGTC	1 cut(s)	57
PpsI	GAGTC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	317, 369
SatI	GCNGC	2 cut(s)	48, 109
Sau3AI	GATC	5 cut(s)	37, 88, 230, 326, 424
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	115, 156, 221
SsiI	CCGC	2 cut(s)	108, 125
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	5 cut(s)	250, 268, 376, 400, 406
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	115, 156, 221
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	2 cut(s)	317, 369
Tru9I	TTAA	2 cut(s)	317, 369
TscAI	CASTG	2 cut(s)	127, 255
TseFI	GTSAC	5 cut(s)	250, 268, 346, 400, 406
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	5 cut(s)	250, 268, 346, 400, 406
TspDTI	ATGAA	2 cut(s)	87, 429
TspRI	CASTG	2 cut(s)	127, 255
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.