Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012343.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

64848 .. 65688

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012343.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgttatgcgatgaattaactggaaatgttgaggcccgaagagctggtgcaattggcacagttttaaagaataatttactagcttttgaaggagtttctgaagttctcccactactagcagtagctttaagggatgaagagaataatgttgtcatgtcctacatgaactccagtaaagatcctcgagccaacatattaagatatataagtgccccgggggttgatattttggcagcatattcacctgttgcccctatcacaaagagcgctgaagacaagcgtcgtgtgagatgtacactactatctggaacctccatggcttgtcctcatgctgcaggtgcagctgcatatgttaaagagatgcaccctgattggtctccaactgccattaaatcatctcttatgactacaacttggcctatgaatgatactagcaacttccccagtgaatatgcttatggatctggacatatcaaccctttgaaagctatagatctggggcttgtctatgaagcttctagagaagattgtataaactttctctgcatggtgttcgatgaggctgatgttagacttatttctggactgaacaggaattgcccacaaggatcgccaaaggatcacaattatccttcattggcatctgttgttacaccaacaataccgtttaacattagctttcatagaacggttaaaaatgttggcctttcaaactctacatacaaggccaaaatcttgccaattaaattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

250

Amino Acids

27.21

Weight (kDa)

6.95

Isoelectric Point (pI)

49.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	326
Acc36I	ACCTGC	1 cut(s)	326
AclWI	GGATC	4 cut(s)	173, 469, 616, 627
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	2 cut(s)	120, 291
AfaI	GTAC	1 cut(s)	295
AfeI	AGCGCT	1 cut(s)	268
AgsI	TTSAA	3 cut(s)	89, 484, 711
AluBI	AGCT	7 cut(s)	44, 83, 125, 344, 488, 515, 678
AluI	AGCT	7 cut(s)	44, 83, 125, 344, 488, 515, 678
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	4 cut(s)	173, 469, 616, 627
Ama87I	CYCGRG	2 cut(s)	183, 214
Aor51HI	AGCGCT	1 cut(s)	268
AoxI	GGCC	4 cut(s)	33, 416, 703, 726
ApeKI	GCWGC	4 cut(s)	233, 332, 341, 344
ApoI	RAATTY	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	2 cut(s)	215, 216
AsuHPI	GGTGA	1 cut(s)	234
AvaI	CYCGRG	2 cut(s)	183, 214
BaeGI	GKGCMC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	245, 319, 331, 353
BcgI	CGANNNNNNTGC	2 cut(s)	535, 569
BcnI	CCSGG	2 cut(s)	215, 216
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	4 cut(s)	80, 116, 432, 519
BfmI	CTRYAG	2 cut(s)	333, 489
BfoI	RGCGCY	1 cut(s)	270
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	4 cut(s)	234, 333, 342, 345
BlsI	GCNGC	4 cut(s)	235, 334, 343, 346
Bme1390I	CCNGG	2 cut(s)	215, 216
BmeT110I	CYCGRG	2 cut(s)	183, 214
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	215, 216
BmrI	ACTGGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	351, 650
BmuI	ACTGGG	1 cut(s)	438
BoxI	GACNNNNGTC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	154
BpuMI	CCSGG	2 cut(s)	215, 216
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	4 cut(s)	213, 214, 215, 315
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse1I	ACTGG	3 cut(s)	25, 171, 444
BseDI	CCNNGG	4 cut(s)	213, 214, 215, 315
BseGI	GGATG	1 cut(s)	139
BseNI	ACTGG	3 cut(s)	25, 171, 444
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	4 cut(s)	245, 319, 331, 353
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	4 cut(s)	35, 418, 705, 728
BsiHKCI	CYCGRG	2 cut(s)	183, 214
BsiSI	CCGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	381
BsnI	GGCC	4 cut(s)	35, 418, 705, 728
Bso31I	GGTCTC	1 cut(s)	381
BsoBI	CYCGRG	2 cut(s)	183, 214
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	293
Bsp143I	GATC	5 cut(s)	178, 461, 493, 608, 619
Bsp19I	CCATGG	1 cut(s)	315
BspANI	GGCC	4 cut(s)	35, 418, 705, 728
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	4 cut(s)	173, 469, 616, 627
BspQI	GCTCTTC	1 cut(s)	34
BspTNI	GGTCTC	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	293
BsrI	ACTGG	3 cut(s)	25, 171, 444
BssECI	CCNNGG	4 cut(s)	213, 214, 215, 315
BssMI	GATC	5 cut(s)	178, 461, 493, 608, 619
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	3 cut(s)	61, 666, 691
Bst6I	CTCTTC	2 cut(s)	34, 132
BstAUI	TGTACA	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	5 cut(s)	181, 464, 496, 611, 622
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	5 cut(s)	178, 461, 493, 608, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 338, 341
BstPAI	GACNNNNGTC	1 cut(s)	279
BstSCI	CCNGG	2 cut(s)	213, 214
BstSFI	CTRYAG	2 cut(s)	333, 489
BstSLI	GKGCMC	1 cut(s)	214
BstV1I	GCAGC	4 cut(s)	245, 319, 331, 353
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	3 cut(s)	178, 461, 493
BstYI	RGATCY	3 cut(s)	178, 461, 493
BsuRI	GGCC	4 cut(s)	35, 418, 705, 728
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	451
BveI	ACCTGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	34
Cfr9I	CCCGGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	294
CviAII	CATG	5 cut(s)	154, 163, 316, 329, 547
CviQI	GTAC	1 cut(s)	294
DpnI	GATC	5 cut(s)	180, 463, 495, 610, 621
DpnII	GATC	5 cut(s)	178, 461, 493, 608, 619
DraI	TTTAAA	1 cut(s)	66
Eam1104I	CTCTTC	2 cut(s)	34, 132
EarI	CTCTTC	2 cut(s)	34, 132
Eco130I	CCWWGG	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	381
Eco47III	AGCGCT	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	120, 291
Eco88I	CYCGRG	2 cut(s)	183, 214
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	5 cut(s)	157, 166, 319, 332, 550
FatI	CATG	5 cut(s)	153, 162, 315, 328, 546
FauNDI	CATATG	1 cut(s)	349
Fnu4HI	GCNGC	4 cut(s)	234, 333, 342, 345
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	234, 333, 342, 345
FspBI	CTAG	4 cut(s)	80, 116, 432, 519
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	4 cut(s)	234, 333, 342, 345
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	4 cut(s)	35, 418, 705, 728
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	157, 166, 319, 332, 550
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	513
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	234
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	4 cut(s)	306, 465, 519, 582
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	83, 642
HpyCH4III	ACNGT	3 cut(s)	61, 666, 691
HpyCH4V	TGCA	6 cut(s)	50, 335, 341, 347, 364, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 338, 341
Hsp92II	CATG	5 cut(s)	157, 166, 319, 332, 550
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	5 cut(s)	178, 461, 493, 608, 619
LguI	GCTCTTC	1 cut(s)	34
Lsp1109I	GCAGC	4 cut(s)	245, 319, 331, 353
LweI	GCATC	2 cut(s)	351, 650
MaeI	CTAG	4 cut(s)	80, 116, 432, 519
MaeIII	GTNAC	1 cut(s)	649
MalI	GATC	5 cut(s)	180, 463, 495, 610, 621
MboI	GATC	5 cut(s)	178, 461, 493, 608, 619
MboII	GAAGA	4 cut(s)	51, 149, 284, 536
MfeI	CAATTG	1 cut(s)	51
MflI	RGATCY	3 cut(s)	178, 461, 493
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	7 cut(s)	14, 51, 73, 595, 625, 741, 746
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	25, 192, 322, 336, 553
MseI	TTAA	9 cut(s)	17, 65, 128, 197, 354, 390, 669, 693, 744
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	215, 216
MunI	CAATTG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	41, 338, 341
NciI	CCSGG	2 cut(s)	215, 216
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	178, 461, 493, 608, 619
NlaIII	CATG	5 cut(s)	157, 166, 319, 332, 550
NlaIV	GGNNCC	1 cut(s)	310
PaeR7I	CTCGAG	1 cut(s)	183
PaqCI	CACCTGC	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	235, 334, 343, 346
PshAI	GACNNNNGTC	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	34
PspXI	VCTCGAGB	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	337
PsuI	RGATCY	3 cut(s)	178, 461, 493
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	1 cut(s)	295
RsaNI	GTAC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	9 cut(s)	17, 65, 128, 197, 354, 390, 669, 693, 744
SatI	GCNGC	4 cut(s)	234, 333, 342, 345
Sau3AI	GATC	5 cut(s)	178, 461, 493, 608, 619
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	215, 216
SduI	GDGCHC	1 cut(s)	214
SfaNI	GCATC	2 cut(s)	351, 650
SfcI	CTRYAG	2 cut(s)	333, 489
Sfr274I	CTCGAG	1 cut(s)	183
SlaI	CTCGAG	1 cut(s)	183
SmaI	CCCGGG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	183
SmoI	CTYRAG	1 cut(s)	183
Sse9I	AATT	7 cut(s)	14, 51, 73, 595, 625, 741, 746
SspMI	CTAG	4 cut(s)	80, 116, 432, 519
StyD4I	CCNGG	2 cut(s)	213, 214
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	61, 666, 691
TaqI	TCGA	2 cut(s)	184, 555
TasI	AATT	7 cut(s)	14, 51, 73, 595, 625, 741, 746
TatI	WGTACW	1 cut(s)	293
Tru1I	TTAA	9 cut(s)	17, 65, 128, 197, 354, 390, 669, 693, 744
Tru9I	TTAA	9 cut(s)	17, 65, 128, 197, 354, 390, 669, 693, 744
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	4 cut(s)	233, 332, 341, 344
TspDTI	ATGAA	7 cut(s)	27, 150, 179, 437, 525, 624, 671
TspMI	CCCGGG	1 cut(s)	214
TspRI	CASTG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	746
XbaI	TCTAGA	1 cut(s)	518
XhoI	CTCGAG	1 cut(s)	183
XmaI	CCCGGG	1 cut(s)	214
XspI	CTAG	4 cut(s)	80, 116, 432, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.