Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

3077563 .. 3078189

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1037400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCCTGCCCGCACGTAGCTGGTGTTGCTGCGTATATCAAGACATTCCACCCCAACTGGTCTCCAGCTGCCATCAAATCATCTATCATGACCACGGCTGGGCCTGTGAATAACACCAGCAATTCCACCGGTGAATTTTTGTATGGTTCTGGACATATCAATCCTCTAAAAGCTGTAGATCCGGGGCTTGTGTACGAAACTTCTAAGGATGATTATATTAAGTTGCTCTGCTCGATCTTGGATGAGGCGAGTGTTCGACTTATATCAGGTGATGACCACCCTTGCTCTGCAAAGACCGGGAAAAAATCTCCTAAGGATCTCAACTACCCTTCAATGGCAGGTACTGTTGCACCAGGGACTTCTTCGTTTTCGCTTAAGTTTCGTAGGACAGTTAAAAATGTTGGCCTTGCAAACTCGACATACAAGGCAAATATCATCTCAAAGTCTGGAGTTGACATCCAGGTGGTGCCTCAAGTTCTTTCCTTCAAGTCCTTGAACGAGGAGAAGGCATTCGACGTGACAGTTTCCGGAAGAGGTATGCCATATGGATCACATGTATCTGCGTCGCTGGTGTGGACGGATGGTACTTACAGTGTTCGAAGTCCAGTTCTTGTATTCAGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

209

Amino Acids

22.14

Weight (kDa)

9.07

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	1 - 49	3.2e-08	Subtilase family
fn3_6	PF17766	106 - 205	1.9e-26	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	466
AccIII	TCCGGA	1 cut(s)	527
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	3 cut(s)	173, 324, 556
AcsI	RAATTY	1 cut(s)	134
AfaI	GTAC	3 cut(s)	194, 343, 586
AfiI	CCNNNNNNNGG	2 cut(s)	99, 334
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	553
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	333, 487, 496
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	352, 459
AluBI	AGCT	3 cut(s)	20, 68, 173
AluI	AGCT	3 cut(s)	20, 68, 173
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	3 cut(s)	173, 324, 556
AlwNI	CAGNNNCTG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	527
AoxI	GGCC	2 cut(s)	101, 403
ApeKI	GCWGC	2 cut(s)	29, 68
ApoI	RAATTY	1 cut(s)	134
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	183, 298
AsuHPI	GGTGA	2 cut(s)	143, 281
AsuII	TTCGAA	1 cut(s)	598
AxyI	CCTNAGG	1 cut(s)	312
BanI	GGYRCC	1 cut(s)	466
BbvI	GCAGC	2 cut(s)	16, 55
BccI	CCATC	2 cut(s)	80, 575
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	354, 461
BcnI	CCSGG	2 cut(s)	183, 298
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	374
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	2 cut(s)	30, 69
BlsI	GCNGC	2 cut(s)	31, 70
Bme1390I	CCNGG	4 cut(s)	183, 298, 354, 461
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	4 cut(s)	183, 298, 354, 461
BpmI	CTGGAG	2 cut(s)	48, 468
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	456
BpuMI	CCSGG	2 cut(s)	183, 298
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	3 cut(s)	93, 182, 353
BsaWI	WCCGGW	2 cut(s)	128, 527
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 334
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	62, 605
Bse21I	CCTNAGG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	2 cut(s)	354, 461
BseDI	CCNNGG	3 cut(s)	93, 182, 353
BseGI	GGATG	4 cut(s)	214, 247, 456, 586
BseLI	CCNNNNNNNGG	2 cut(s)	99, 334
BseNI	ACTGG	2 cut(s)	62, 605
BseRI	GAGGAG	1 cut(s)	515
BseXI	GCAGC	2 cut(s)	16, 55
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	103, 405
BshNI	GGYRCC	1 cut(s)	466
BshTI	ACCGGT	1 cut(s)	128
BsiSI	CCGG	4 cut(s)	129, 182, 297, 528
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	99, 334
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	103, 405
Bso31I	GGTCTC	1 cut(s)	66
Bsp119I	TTCGAA	1 cut(s)	598
Bsp13I	TCCGGA	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	178, 234, 316, 548
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	103, 405
BspEI	TCCGGA	1 cut(s)	527
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	329
BspPI	GGATC	3 cut(s)	173, 324, 556
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	62, 605
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	93, 182, 353
BssMI	GATC	4 cut(s)	178, 234, 316, 548
Bst2UI	CCWGG	2 cut(s)	354, 461
Bst4CI	ACNGT	4 cut(s)	346, 391, 523, 593
Bst6I	CTCTTC	1 cut(s)	526
BstAFI	CTTAAG	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	16
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	204, 312
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	4 cut(s)	214, 247, 456, 586
BstKTI	GATC	4 cut(s)	181, 237, 319, 551
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	4 cut(s)	178, 234, 316, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	354, 461
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	4 cut(s)	181, 296, 352, 459
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	16, 55
BstX2I	RGATCY	2 cut(s)	178, 316
BstYI	RGATCY	2 cut(s)	178, 316
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	2 cut(s)	103, 405
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	4 cut(s)	214, 247, 456, 586
BtsIMutI	CAGTG	1 cut(s)	598
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	1 cut(s)	344
CciI	TCATGA	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	193, 342, 585
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	2 cut(s)	88, 554
CviJI	RGCY	8 cut(s)	20, 68, 98, 103, 173, 187, 405, 621
CviKI_1	RGCY	8 cut(s)	20, 68, 98, 103, 173, 187, 405, 621
CviQI	GTAC	3 cut(s)	193, 342, 585
DdeI	CTNAG	2 cut(s)	204, 312
DpnI	GATC	4 cut(s)	180, 236, 318, 550
DpnII	GATC	4 cut(s)	178, 234, 316, 548
Eam1104I	CTCTTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	526
Eco31I	GGTCTC	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	352, 459
FaeI	CATG	2 cut(s)	91, 557
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	2 cut(s)	87, 553
FauI	CCCGC	1 cut(s)	18
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	2 cut(s)	30, 69
FokI	GGATG	4 cut(s)	221, 254, 443, 593
Fsp4HI	GCNGC	2 cut(s)	30, 69
GluI	GCNGC	2 cut(s)	30, 69
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	2 cut(s)	48, 468
HaeIII	GGCC	2 cut(s)	103, 405
HapII	CCGG	4 cut(s)	129, 182, 297, 528
HgaI	GACGC	1 cut(s)	552
Hin1II	CATG	2 cut(s)	91, 557
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HpaII	CCGG	4 cut(s)	129, 182, 297, 528
HphI	GGTGA	2 cut(s)	143, 281
Hpy166II	GTNNAC	3 cut(s)	193, 454, 576
Hpy188III	TCNNGA	5 cut(s)	40, 88, 150, 447, 528
Hpy8I	GTNNAC	3 cut(s)	193, 454, 576
Hpy99I	CGWCG	2 cut(s)	518, 568
HpyAV	CCTTC	3 cut(s)	339, 493, 499
HpyCH4III	ACNGT	4 cut(s)	346, 391, 523, 593
HpyCH4IV	ACGT	2 cut(s)	15, 516
HpyCH4V	TGCA	3 cut(s)	290, 350, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	26
HpyF3I	CTNAG	2 cut(s)	204, 312
HpySE526I	ACGT	2 cut(s)	15, 516
Hsp92II	CATG	2 cut(s)	91, 557
Kpn2I	TCCGGA	1 cut(s)	527
Kzo9I	GATC	4 cut(s)	178, 234, 316, 548
Lsp1109I	GCAGC	2 cut(s)	16, 55
MaeII	ACGT	2 cut(s)	15, 516
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	4 cut(s)	180, 236, 318, 550
MboI	GATC	4 cut(s)	178, 234, 316, 548
MboII	GAAGA	2 cut(s)	354, 543
MflI	RGATCY	2 cut(s)	178, 316
MluCI	AATT	2 cut(s)	121, 134
MnlI	CCTC	5 cut(s)	174, 238, 480, 493, 527
MroI	TCCGGA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	3 cut(s)	219, 375, 393
MslI	CAYNNNNRTG	1 cut(s)	461
MspA1I	CMGCKG	1 cut(s)	68
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	4 cut(s)	129, 182, 297, 528
MspR9I	CCNGG	4 cut(s)	183, 298, 354, 461
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	2 cut(s)	354, 461
MwoI	GCNNNNNNNGC	1 cut(s)	26
NciI	CCSGG	2 cut(s)	183, 298
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	4 cut(s)	178, 234, 316, 548
NlaIII	CATG	2 cut(s)	91, 557
NlaIV	GGNNCC	1 cut(s)	468
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	598
PagI	TCATGA	1 cut(s)	87
PciI	ACATGT	1 cut(s)	553
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	1 cut(s)	509
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	31, 70
Ppu21I	YACGTR	1 cut(s)	16
PscI	ACATGT	1 cut(s)	553
Psp6I	CCWGG	2 cut(s)	352, 459
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	2 cut(s)	352, 459
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	178, 316
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	194, 343, 586
RsaNI	GTAC	3 cut(s)	193, 342, 585
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	219, 375, 393
SatI	GCNGC	2 cut(s)	30, 69
Sau3AI	GATC	4 cut(s)	178, 234, 316, 548
Sau96I	GGNCC	1 cut(s)	101
ScrFI	CCNGG	4 cut(s)	183, 298, 354, 461
SetI	ASST	9 cut(s)	18, 22, 70, 175, 271, 343, 465, 519, 538
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	598
SgrAI	CRCCGGYG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	374, 471
SmoI	CTYRAG	2 cut(s)	374, 471
Sse9I	AATT	2 cut(s)	121, 134
SsiI	CCGC	1 cut(s)	11
StyD4I	CCNGG	4 cut(s)	181, 296, 352, 459
TaaI	ACNGT	4 cut(s)	346, 391, 523, 593
TaiI	ACGT	2 cut(s)	18, 519
TaqI	TCGA	5 cut(s)	233, 256, 416, 513, 598
TasI	AATT	2 cut(s)	121, 134
Tru1I	TTAA	3 cut(s)	219, 375, 393
Tru9I	TTAA	3 cut(s)	219, 375, 393
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	517
TseI	GCWGC	2 cut(s)	29, 68
Tsp45I	GTSAC	1 cut(s)	517
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	598
Vha464I	CTTAAG	1 cut(s)	374
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.