Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

11378497 .. 11379729

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGAAGGGGATACTAACAACAAACTCAGCAGGCAATGGTGGTCCTTTTGATGGAAGTGTAGCACCATGGATGCTAACAGTTGCAGCAAGTACAATAGATCGACGGATCATTGACAAGGTGATTCTTGGAAATGGAAAAACATTAGTCGCGGCGTTGGTAAACTCTTTCACATTAAATGGACCAAGTTTTCTATTGATTTATGGAAATGGCGCTTCAAGTCGATGCTCAAACTTTAGTACTAGGACTTGTATAGATGGCTTCTTAGATAGTGATTTAGTTAAGGGAAAGGTTTTGTTATGTGATGAGTCAGATGGAGCTAATGGGGCCTTTCTTTCTGGAGCAGTAGGTTCAATTATGAAAGTTGATTGGGATGACTATTCTCTAGTTCCCCCACTTCCTGCAACGAGTTTGAGCCTCAATAACCATAATGTGATCAAGTCCTACATGAACTCCATGAAAGATCCTCAAGTAAACATACTCAGAAGTGAAGTCATAAAAGATGTTTCTGCACTCATTGTGGCTTCTTTCTCTTCACGTGGACCAAATTTACTTTTACCTGAAATTATCAAGCCTGATGTAAGCGCCCCAGGGAGGATTGTAAAAAATGTTGGCCTTCCAAACTCCACTTATAAGGAAAATATTTTGGCAACCTCCACTTACAAGGCCAACTTCACTCAATTCAACAAAGTTTTGCCTCAAGTTCTTTCCTTCGAGTCCTTGAATGAGGAGATTGAAGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

248

Amino Acids

26.53

Weight (kDa)

5.24

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AccII	CGCG	1 cut(s)	152
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	116, 458
AcsI	RAATTY	1 cut(s)	547
AcvI	CACGTG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	94, 241
AfiI	CCNNNNNNNGG	2 cut(s)	53, 594
AgsI	TTSAA	5 cut(s)	219, 354, 685, 724, 737
AjnI	CCWGG	1 cut(s)	589
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
AlwI	GGATC	2 cut(s)	116, 458
AoxI	GGCC	3 cut(s)	327, 613, 666
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	215, 587
AspS9I	GGNCC	4 cut(s)	44, 182, 327, 542
AsuHPI	GGTGA	1 cut(s)	133
AvaII	GGWCC	3 cut(s)	44, 182, 542
BbrPI	CACGTG	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	98
BccI	CCATC	3 cut(s)	47, 251, 308
BciT130I	CCWGG	1 cut(s)	591
BciVI	GTATCC	1 cut(s)	6
BclI	TGATCA	1 cut(s)	435
BfaI	CTAG	2 cut(s)	243, 386
BfoI	RGCGCY	2 cut(s)	216, 588
BfuI	GTATCC	1 cut(s)	6
BisI	GCNGC	2 cut(s)	87, 153
BlsI	GCNGC	2 cut(s)	88, 154
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	591
Bme18I	GGWCC	3 cut(s)	44, 182, 542
BmgT120I	GGNCC	4 cut(s)	44, 182, 327, 542
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	591
BmsI	GCATC	2 cut(s)	63, 215
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	453, 684
BsaAI	YACGTR	1 cut(s)	539
BsaJI	CCNNGG	3 cut(s)	68, 589, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 594
Bse3DI	GCAATG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	591
BseDI	CCNNGG	3 cut(s)	68, 589, 590
BseGI	GGATG	2 cut(s)	78, 379
BseLI	CCNNNNNNNGG	2 cut(s)	53, 594
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	2 cut(s)	42, 496
BseRI	GAGGAG	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	3 cut(s)	329, 615, 668
BslI	CCNNNNNNNGG	2 cut(s)	53, 594
BsnI	GGCC	3 cut(s)	329, 615, 668
Bsp143I	GATC	4 cut(s)	100, 108, 435, 463
Bsp19I	CCATGG	1 cut(s)	68
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	3 cut(s)	329, 615, 668
BspCNI	CTCAG	2 cut(s)	41, 495
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	116, 458
BsrDI	GCAATG	1 cut(s)	43
BssECI	CCNNGG	3 cut(s)	68, 589, 590
BssMI	GATC	4 cut(s)	100, 108, 435, 463
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	538
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	3 cut(s)	28, 265, 482
BstDSI	CCRYGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	78, 379
BstFNI	CGCG	1 cut(s)	152
BstH2I	RGCGCY	2 cut(s)	216, 588
BstHHI	GCGC	2 cut(s)	215, 587
BstKTI	GATC	4 cut(s)	103, 111, 438, 466
BstMBI	GATC	4 cut(s)	100, 108, 435, 463
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	589
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	329, 615, 668
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	78, 379
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	2 cut(s)	215, 587
Cfr13I	GGNCC	4 cut(s)	44, 182, 327, 542
Csp6I	GTAC	2 cut(s)	93, 240
CviAII	CATG	3 cut(s)	69, 448, 457
CviJI	RGCY	8 cut(s)	261, 320, 329, 417, 524, 574, 615, 668
CviKI_1	RGCY	8 cut(s)	261, 320, 329, 417, 524, 574, 615, 668
CviQI	GTAC	2 cut(s)	93, 240
DdeI	CTNAG	3 cut(s)	28, 265, 482
DpnI	GATC	4 cut(s)	102, 110, 437, 465
DpnII	GATC	4 cut(s)	100, 108, 435, 463
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	68
Eco47I	GGWCC	3 cut(s)	44, 182, 542
Eco72I	CACGTG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	3 cut(s)	72, 451, 460
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FatI	CATG	3 cut(s)	68, 447, 456
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	87, 153
FokI	GGATG	2 cut(s)	85, 386
Fsp4HI	GCNGC	2 cut(s)	87, 153
FspBI	CTAG	2 cut(s)	243, 386
GlaI	GCGC	2 cut(s)	214, 586
GluI	GCNGC	2 cut(s)	87, 153
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	2 cut(s)	216, 588
HaeIII	GGCC	3 cut(s)	329, 615, 668
HhaI	GCGC	2 cut(s)	215, 587
Hin1II	CATG	3 cut(s)	72, 451, 460
Hin6I	GCGC	2 cut(s)	213, 585
HinP1I	GCGC	2 cut(s)	213, 585
HinfI	GANTC	3 cut(s)	124, 308, 716
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	3 cut(s)	163, 475, 542
Hpy188I	TCNGA	2 cut(s)	313, 485
Hpy188III	TCNNGA	1 cut(s)	339
Hpy8I	GTNNAC	3 cut(s)	163, 475, 542
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	626, 721
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	86, 404, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	3 cut(s)	28, 265, 482
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	72, 451, 460
HspAI	GCGC	2 cut(s)	213, 585
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	4 cut(s)	100, 108, 435, 463
LmnI	GCTCC	2 cut(s)	317, 341
LpnPI	CCDG	7 cut(s)	18, 324, 414, 573, 576, 588, 603
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	63, 215
MaeI	CTAG	2 cut(s)	243, 386
MaeII	ACGT	1 cut(s)	538
MalI	GATC	4 cut(s)	102, 110, 437, 465
MboI	GATC	4 cut(s)	100, 108, 435, 463
MboII	GAAGA	1 cut(s)	525
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	4 cut(s)	354, 547, 564, 680
MlyI	GAGTC	2 cut(s)	317, 725
MnlI	CCTC	6 cut(s)	428, 477, 588, 664, 708, 721
MseI	TTAA	2 cut(s)	176, 282
MspR9I	CCNGG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	68
NdeII	GATC	4 cut(s)	100, 108, 435, 463
NlaIII	CATG	3 cut(s)	72, 451, 460
NlaIV	GGNNCC	1 cut(s)	328
PasI	CCCWGGG	1 cut(s)	590
PfeI	GAWTC	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	88, 154
PleI	GAGTC	2 cut(s)	316, 724
PmaCI	CACGTG	1 cut(s)	539
PmlI	CACGTG	1 cut(s)	539
PpsI	GAGTC	2 cut(s)	316, 724
Ppu21I	YACGTR	1 cut(s)	539
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	589
PspCI	CACGTG	1 cut(s)	539
PspGI	CCWGG	1 cut(s)	589
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	4 cut(s)	44, 182, 327, 542
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	2 cut(s)	94, 241
RsaNI	GTAC	2 cut(s)	93, 240
SaqAI	TTAA	2 cut(s)	176, 282
SatI	GCNGC	2 cut(s)	87, 153
Sau3AI	GATC	4 cut(s)	100, 108, 435, 463
Sau96I	GGNCC	4 cut(s)	44, 182, 327, 542
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	317, 725
ScrFI	CCNGG	1 cut(s)	591
SetI	ASST	8 cut(s)	123, 294, 322, 352, 541, 562, 656, 744
SfaNI	GCATC	2 cut(s)	63, 215
SinI	GGWCC	3 cut(s)	44, 182, 542
SmlI	CTYRAG	2 cut(s)	468, 699
SmoI	CTYRAG	2 cut(s)	468, 699
Sse9I	AATT	4 cut(s)	354, 547, 564, 680
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	1 cut(s)	643
SspMI	CTAG	2 cut(s)	243, 386
StyD4I	CCNGG	1 cut(s)	589
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	3 cut(s)	103, 223, 714
TasI	AATT	4 cut(s)	354, 547, 564, 680
TatI	WGTACW	2 cut(s)	92, 239
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	176, 282
Tru9I	TTAA	2 cut(s)	176, 282
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	3 cut(s)	374, 464, 473
TspGWI	ACGGA	1 cut(s)	121
VpaK11BI	GGWCC	3 cut(s)	44, 182, 542
XapI	RAATTY	1 cut(s)	547
XspI	CTAG	2 cut(s)	243, 386
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.