Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

74561883 .. 74563129

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG470700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCTCTCTTATTTTATAGAGATCCTCGCGTGAACATATTAAAAAGTGAAGTCATAAAAAATCCTGCTGCACCTGCTGTTGCTTCATTCTCTGCACGTGGACCGAATTTAATTTTACCTGATATTATCAAGCCAGATATAAGTGCCCCAGGGATAGAAATTCTGGCTGCATTTTCGTCTGCTCCTATCTCAACCACTCCTGGAGATATGAGGCGTGTTAAGTACAATATACAATCTGGAACCTCCATGGCTTGCCCCCATGCTGCTGGTGTAGCTACCTATGTTAAAACCTTCCACCCTGATTGGTCTCCCGCAGCCATCAAATCATCTATTATGACTACTGCTTGGCCCATGAATGATCCCAGCAGCCATGTTTCCACTGGTGAATTCGCTTATGGATCAGGCCATATCAATCCATTAAAAGCTATTGACCCCGGGCTTGTGTATGATGCTTCCAAAGAAGATTACATAAAGTTTCTGTGCATCAGCTATGATGAAAGCAGAGTTAGACTTGTATCAGGAGATAACAGCACATGCCCTACAGGTCCTGACAAGGGATCTCCGAAGGATCATAATTACCCTTCGATGGGAGCTAAAGTTACCGCAATGCAACCATTTACAGTTAAATTTAATAGAAGAGTTAAAAATGTTGGCAATGCAAACTCCACTTATGTAGCCAAAATCTCCCCCAATTCCAAACTCGAGATTAAAGTGGTGCCGGAAGTCCTATCCTTCAAGTCCTTGAATGAGGAGAAGACTTTTAATGTGACTGTTTCTGGAAGCAATTTGCCTTTTGAATCACGAGCATCTGCTTCACTGGTTTGGTCTGATGGTACTCATGGCGTTAGAAGTCCGATTGTTGTGTACACCGTGCCTAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

294

Amino Acids

31.7

Weight (kDa)

9.22

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	25 - 133	1.7e-19	Subtilase family
fn3_6	PF17766	190 - 288	4.1e-26	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	82
Acc36I	ACCTGC	1 cut(s)	82
AccB1I	GGYRCC	1 cut(s)	715
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	312, 603
AclWI	GGATC	5 cut(s)	17, 353, 406, 565, 576
AcsI	RAATTY	4 cut(s)	106, 159, 386, 626
AcvI	CACGTG	1 cut(s)	98
AfaI	GTAC	3 cut(s)	224, 835, 866
AfiI	CCNNNNNNNGG	3 cut(s)	554, 586, 587
AgsI	TTSAA	3 cut(s)	736, 745, 797
AjnI	CCWGG	2 cut(s)	148, 199
AluBI	AGCT	4 cut(s)	275, 425, 489, 593
AluI	AGCT	4 cut(s)	275, 425, 489, 593
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	5 cut(s)	17, 353, 406, 565, 576
AlwNI	CAGNNNCTG	1 cut(s)	548
Ama87I	CYCGRG	2 cut(s)	434, 701
AoxI	GGCC	2 cut(s)	347, 403
ApeKI	GCWGC	5 cut(s)	68, 167, 263, 314, 366
ApoI	RAATTY	4 cut(s)	106, 159, 386, 626
AspS9I	GGNCC	3 cut(s)	101, 348, 545
AsuC2I	CCSGG	2 cut(s)	435, 436
AsuHPI	GGTGA	1 cut(s)	395
AvaI	CYCGRG	2 cut(s)	434, 701
AvaII	GGWCC	2 cut(s)	101, 545
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	715
BauI	CACGAG	1 cut(s)	801
BbrPI	CACGTG	1 cut(s)	98
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	5 cut(s)	55, 154, 250, 326, 378
BccI	CCATC	3 cut(s)	326, 580, 824
BciT130I	CCWGG	2 cut(s)	150, 201
BcnI	CCSGG	2 cut(s)	435, 436
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	540
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	5 cut(s)	69, 168, 264, 315, 367
BlsI	GCNGC	5 cut(s)	70, 169, 265, 316, 368
Bme1390I	CCNGG	4 cut(s)	150, 201, 435, 436
Bme18I	GGWCC	2 cut(s)	101, 545
BmeT110I	CYCGRG	2 cut(s)	434, 701
BmgT120I	GGNCC	3 cut(s)	101, 348, 545
BmiI	GGNNCC	2 cut(s)	241, 717
BmrFI	CCNGG	4 cut(s)	150, 201, 435, 436
BmsI	GCATC	3 cut(s)	439, 492, 815
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	1 cut(s)	222
BpuMI	CCSGG	2 cut(s)	435, 436
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	5 cut(s)	148, 149, 246, 433, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	554, 586, 587
Bse1I	ACTGG	2 cut(s)	385, 822
Bse3DI	GCAATG	2 cut(s)	612, 661
BseBI	CCWGG	2 cut(s)	150, 201
BseDI	CCNNGG	5 cut(s)	148, 149, 246, 433, 434
BseLI	CCNNNNNNNGG	3 cut(s)	554, 586, 587
BseMI	GCAATG	2 cut(s)	612, 661
BseNI	ACTGG	2 cut(s)	385, 822
BseRI	GAGGAG	1 cut(s)	764
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	5 cut(s)	55, 154, 250, 326, 378
BseYI	CCCAGC	1 cut(s)	362
BsgI	GTGCAG	2 cut(s)	54, 78
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	349, 405
BshNI	GGYRCC	1 cut(s)	715
BsiHKCI	CYCGRG	2 cut(s)	434, 701
BsiSI	CCGG	2 cut(s)	435, 719
BslI	CCNNNNNNNGG	3 cut(s)	554, 586, 587
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	349, 405
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	2 cut(s)	434, 701
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	864
Bsp143I	GATC	5 cut(s)	22, 358, 398, 557, 568
Bsp19I	CCATGG	1 cut(s)	246
BspACI	CCGC	2 cut(s)	312, 603
BspANI	GGCC	2 cut(s)	349, 405
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	241, 717
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	5 cut(s)	17, 353, 406, 565, 576
BspT107I	GGYRCC	1 cut(s)	715
BspTNI	GGTCTC	1 cut(s)	312
BsrDI	GCAATG	2 cut(s)	612, 661
BsrGI	TGTACA	1 cut(s)	864
BsrI	ACTGG	2 cut(s)	385, 822
BssECI	CCNNGG	5 cut(s)	148, 149, 246, 433, 434
BssMI	GATC	5 cut(s)	22, 358, 398, 557, 568
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	2 cut(s)	150, 201
Bst4CI	ACNGT	3 cut(s)	622, 772, 871
Bst6I	CTCTTC	1 cut(s)	631
BstAUI	TGTACA	1 cut(s)	864
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	5 cut(s)	25, 361, 401, 560, 571
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	5 cut(s)	22, 358, 398, 557, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 272
BstNI	CCWGG	2 cut(s)	150, 201
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	4 cut(s)	148, 199, 433, 434
BstSFI	CTRYAG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	5 cut(s)	55, 154, 250, 326, 378
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	22, 557
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	2 cut(s)	22, 557
BsuRI	GGCC	2 cut(s)	349, 405
BtgI	CCRYGG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	378, 815
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	253
CaiI	CAGNNNCTG	1 cut(s)	548
Cfr13I	GGNCC	3 cut(s)	101, 348, 545
Cfr9I	CCCGGG	1 cut(s)	434
Csp6I	GTAC	3 cut(s)	223, 834, 865
CspCI	CAANNNNNGTGG	2 cut(s)	284, 319
CviAII	CATG	7 cut(s)	247, 260, 352, 371, 534, 839, 882
CviQI	GTAC	3 cut(s)	223, 834, 865
DpnI	GATC	5 cut(s)	24, 360, 400, 559, 570
DpnII	GATC	5 cut(s)	22, 358, 398, 557, 568
Eam1104I	CTCTTC	1 cut(s)	631
EarI	CTCTTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	101, 545
Eco72I	CACGTG	1 cut(s)	98
Eco88I	CYCGRG	2 cut(s)	434, 701
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	148, 199
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	7 cut(s)	250, 263, 355, 374, 537, 842, 885
FatI	CATG	7 cut(s)	246, 259, 351, 370, 533, 838, 881
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	69, 168, 264, 315, 367
Fsp4HI	GCNGC	5 cut(s)	69, 168, 264, 315, 367
FspBI	CTAG	1 cut(s)	876
GluI	GCNGC	5 cut(s)	69, 168, 264, 315, 367
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	349, 405
HapII	CCGG	2 cut(s)	435, 719
Hin1II	CATG	7 cut(s)	250, 263, 355, 374, 537, 842, 885
HinfI	GANTC	1 cut(s)	797
HpaII	CCGG	2 cut(s)	435, 719
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	4 cut(s)	34, 101, 865, 867
Hpy188I	TCNGA	3 cut(s)	564, 829, 855
Hpy188III	TCNNGA	6 cut(s)	237, 519, 548, 703, 777, 801
Hpy8I	GTNNAC	4 cut(s)	34, 101, 865, 867
HpyAV	CCTTC	4 cut(s)	301, 559, 591, 742
HpyCH4III	ACNGT	3 cut(s)	622, 772, 871
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	71, 95, 170, 483, 610, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 272
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	7 cut(s)	250, 263, 355, 374, 537, 842, 885
Kzo9I	GATC	5 cut(s)	22, 358, 398, 557, 568
LmnI	GCTCC	2 cut(s)	187, 590
Lsp1109I	GCAGC	5 cut(s)	55, 154, 250, 326, 378
LweI	GCATC	3 cut(s)	439, 492, 815
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	598, 766
MalI	GATC	5 cut(s)	24, 360, 400, 559, 570
MboI	GATC	5 cut(s)	22, 358, 398, 557, 568
MboII	GAAGA	3 cut(s)	473, 648, 766
MflI	RGATCY	2 cut(s)	22, 557
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	8 cut(s)	106, 111, 159, 386, 574, 626, 691, 784
MnlI	CCTC	5 cut(s)	15, 36, 204, 253, 742
MspI	CCGG	2 cut(s)	435, 719
MspR9I	CCNGG	4 cut(s)	150, 201, 435, 436
MvaI	CCWGG	2 cut(s)	150, 201
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	74, 272
NciI	CCSGG	2 cut(s)	435, 436
NcoI	CCATGG	1 cut(s)	246
NdeII	GATC	5 cut(s)	22, 358, 398, 557, 568
NlaIII	CATG	7 cut(s)	250, 263, 355, 374, 537, 842, 885
NlaIV	GGNNCC	2 cut(s)	241, 717
NmuCI	GTSAC	1 cut(s)	766
NspI	RCATGY	1 cut(s)	537
PaeR7I	CTCGAG	1 cut(s)	701
PaqCI	CACCTGC	1 cut(s)	82
PasI	CCCWGGG	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	797
PfoI	TCCNGGA	1 cut(s)	199
PkrI	GCNGC	5 cut(s)	70, 169, 265, 316, 368
PmaCI	CACGTG	1 cut(s)	98
PmlI	CACGTG	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	148, 199
PspCI	CACGTG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	362
PspGI	CCWGG	2 cut(s)	148, 199
PspN4I	GGNNCC	2 cut(s)	241, 717
PspPI	GGNCC	3 cut(s)	101, 348, 545
PspPPI	RGGWCCY	1 cut(s)	545
PstNI	CAGNNNCTG	1 cut(s)	548
PsuI	RGATCY	2 cut(s)	22, 557
RsaI	GTAC	3 cut(s)	224, 835, 866
RsaNI	GTAC	3 cut(s)	223, 834, 865
SatI	GCNGC	5 cut(s)	69, 168, 264, 315, 367
Sau3AI	GATC	5 cut(s)	22, 358, 398, 557, 568
Sau96I	GGNCC	3 cut(s)	101, 348, 545
ScrFI	CCNGG	4 cut(s)	150, 201, 435, 436
SduI	GDGCHC	1 cut(s)	148
SfaNI	GCATC	3 cut(s)	439, 492, 815
SfcI	CTRYAG	1 cut(s)	540
Sfr274I	CTCGAG	1 cut(s)	701
SinI	GGWCC	2 cut(s)	101, 545
SlaI	CTCGAG	1 cut(s)	701
SmaI	CCCGGG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	8 cut(s)	106, 111, 159, 386, 574, 626, 691, 784
SsiI	CCGC	2 cut(s)	312, 603
SspMI	CTAG	1 cut(s)	876
StyD4I	CCNGG	4 cut(s)	148, 199, 433, 434
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	622, 772, 871
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	584, 702
TaqII	GACCGA	1 cut(s)	118
TasI	AATT	8 cut(s)	106, 111, 159, 386, 574, 626, 691, 784
TatI	WGTACW	2 cut(s)	222, 864
TfiI	GAWTC	1 cut(s)	797
TscAI	CASTG	2 cut(s)	385, 822
TseFI	GTSAC	1 cut(s)	766
TseI	GCWGC	5 cut(s)	68, 167, 263, 314, 366
Tsp45I	GTSAC	1 cut(s)	766
TspDTI	ATGAA	3 cut(s)	75, 368, 510
TspMI	CCCGGG	1 cut(s)	434
TspRI	CASTG	2 cut(s)	385, 822
VpaK11BI	GGWCC	2 cut(s)	101, 545
XapI	RAATTY	4 cut(s)	106, 159, 386, 626
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XhoI	CTCGAG	1 cut(s)	701
XmaI	CCCGGG	1 cut(s)	434
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.