Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001449.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

19013 .. 19477

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001449.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggttgctactgtctcatcacgtgggccaaataaatttttacctgaaattataaagccagatataagtgccccgggggttgatattttggcagcatattcacatgttgcccctatcacaaagagcgctgaagacaagcggcgtgtgagatgtacactactatctggaacctccatggcttgtcctcatgctgcaggtgcaactgcatatgttaaagagatgcaccctgattggtctccaactgccattaaatcatctcttatgactacaacttggcctatgaatgatactagcaacttccccggtgaatatgcttatggatctggacatatcaaccctctgaaagctatagatctggggcttgtcactactagaataaagttcatagacatcagttcacaactgatgttaaaaaaaaaaaaatccgatgtcttagtgggtgatgttaaagatcaccaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

154

Amino Acids

16.68

Weight (kDa)

9.1

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	150
AcvI	CACGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	154
AfeI	AGCGCT	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	103
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
Alw26I	GTCTC	2 cut(s)	19, 240
AlwI	GGATC	1 cut(s)	328
Ama87I	CYCGRG	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	2 cut(s)	26, 275
ApeKI	GCWGC	2 cut(s)	92, 191
ApoI	RAATTY	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	3 cut(s)	74, 75, 303
AsuHPI	GGTGA	3 cut(s)	317, 446, 452
AvaI	CYCGRG	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	73
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	104, 178
BcnI	CCSGG	3 cut(s)	74, 75, 303
BcoDI	GTCTC	2 cut(s)	19, 240
BfaI	CTAG	2 cut(s)	291, 372
BfmI	CTRYAG	2 cut(s)	192, 348
BfoI	RGCGCY	1 cut(s)	129
BfuAI	ACCTGC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	3 cut(s)	93, 140, 192
BlsI	GCNGC	3 cut(s)	94, 141, 193
Bme1390I	CCNGG	3 cut(s)	74, 75, 303
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	74, 75, 303
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	3 cut(s)	74, 75, 303
BsaAI	YACGTR	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	5 cut(s)	72, 73, 74, 174, 301
BseDI	CCNNGG	5 cut(s)	72, 73, 74, 174, 301
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	104, 178
BshFI	GGCC	2 cut(s)	28, 277
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	2 cut(s)	74, 303
BsmAI	GTCTC	2 cut(s)	19, 240
BsnI	GGCC	2 cut(s)	28, 277
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	152
Bsp143I	GATC	3 cut(s)	320, 352, 451
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	28, 277
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	152
BssECI	CCNNGG	5 cut(s)	72, 73, 74, 174, 301
BssMI	GATC	3 cut(s)	320, 352, 451
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	13
BstAUI	TGTACA	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	433
BstDSI	CCRYGG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	323, 355, 454
BstMAI	GTCTC	2 cut(s)	19, 240
BstMBI	GATC	3 cut(s)	320, 352, 451
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	3 cut(s)	72, 73, 301
BstSFI	CTRYAG	2 cut(s)	192, 348
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	2 cut(s)	104, 178
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	320, 352
BstYI	RGATCY	2 cut(s)	320, 352
BsuRI	GGCC	2 cut(s)	28, 277
BtgI	CCRYGG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	26
Cfr9I	CCCGGG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	3 cut(s)	104, 175, 188
CviJI	RGCY	6 cut(s)	28, 58, 179, 277, 347, 361
CviKI_1	RGCY	6 cut(s)	28, 58, 179, 277, 347, 361
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	433
DpnI	GATC	3 cut(s)	322, 354, 453
DpnII	GATC	3 cut(s)	320, 352, 451
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	150
Eco72I	CACGTG	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	3 cut(s)	107, 178, 191
FatI	CATG	3 cut(s)	103, 174, 187
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	93, 140, 192
Fsp4HI	GCNGC	3 cut(s)	93, 140, 192
FspBI	CTAG	2 cut(s)	291, 372
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	3 cut(s)	93, 140, 192
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	28, 277
HapII	CCGG	2 cut(s)	74, 303
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	3 cut(s)	107, 178, 191
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HpaII	CCGG	2 cut(s)	74, 303
HphI	GGTGA	3 cut(s)	317, 446, 452
Hpy166II	GTNNAC	2 cut(s)	155, 398
Hpy188I	TCNGA	2 cut(s)	342, 427
Hpy188III	TCNNGA	2 cut(s)	165, 324
Hpy8I	GTNNAC	2 cut(s)	155, 398
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	194, 200, 206, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	1 cut(s)	433
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	107, 178, 191
HspAI	GCGC	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	320, 352, 451
LpnPI	CCDG	9 cut(s)	57, 72, 87, 150, 180, 240, 309, 316, 341
Lsp1109I	GCAGC	2 cut(s)	104, 178
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	291, 372
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	322, 354, 453
MboI	GATC	3 cut(s)	320, 352, 451
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	2 cut(s)	320, 352
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	35, 48
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	181, 195, 348
MseI	TTAA	4 cut(s)	213, 249, 410, 447
MspI	CCGG	2 cut(s)	74, 303
MspR9I	CCNGG	3 cut(s)	74, 75, 303
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	3 cut(s)	74, 75, 303
NcoI	CCATGG	1 cut(s)	174
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	3 cut(s)	320, 352, 451
NlaIII	CATG	3 cut(s)	107, 178, 191
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	1 cut(s)	107
PaqCI	CACCTGC	1 cut(s)	185
PciI	ACATGT	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	94, 141, 193
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	23
PscI	ACATGT	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	2 cut(s)	320, 352
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	4 cut(s)	213, 249, 410, 447
SatI	GCNGC	3 cut(s)	93, 140, 192
Sau3AI	GATC	3 cut(s)	320, 352, 451
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	74, 75, 303
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	5 cut(s)	25, 46, 173, 199, 349
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	192, 348
SmaI	CCCGGG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	35, 48
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	291, 372
StyD4I	CCNGG	3 cut(s)	72, 73, 301
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	13
TaiI	ACGT	1 cut(s)	25
TasI	AATT	2 cut(s)	35, 48
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	4 cut(s)	213, 249, 410, 447
Tru9I	TTAA	4 cut(s)	213, 249, 410, 447
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	2 cut(s)	92, 191
Tsp45I	GTSAC	1 cut(s)	364
TspDTI	ATGAA	2 cut(s)	296, 373
TspMI	CCCGGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	35
XceI	RCATGY	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	291, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.