Rh1AG082800

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001233
Physical Location & Seq
Forward (+)
14178381 .. 14178917
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG082800.1

Sequence Viewer

Length: 537 bp
ATGAATGTTACTGACAATAGCAGAGCCGCTGGTGAATTTGCATATGGATCCGGACATATCAATCCTGTTAAAGCTATAGACCCAGGGCTTGTGTATGAAGCTTCTAAGGAAGACTACATCAAGTTGCTCTGCTTGGTCTTAAACCAGACCGATGTTAGACTTATATCAGGAGATAACAACACTTGCTCTACAGGCTCCGACAAAGGATCTTTACAAGATCACAATTACCCTTCACTAGCAGCCGTTGTCGTACCAAACAAATCCTTTTCGTTAAATTTTCACAGAACAGTGAAGAATGTTGGGCTTGCAAACTCCACTTACAATGCTACAGTACTCGCCAACTCTACTGAAGTTGACATCAAAGTGGTGCCTCAAGTTCTTTCCTTCAAGTCATTGGATGAGGAGAAGACCTTTAATGTGACTGTTGTCGGAAAAGGTTTGTCCGATGAAGCACAATCACATGTGTCTGCATCGTTGGTGTGGTCTGATGGAATTCATAGCGTTAGAAGTCCAATTGTTATCTACAAAAAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

178

Amino Acids

19.18

Weight (kDa)

6.18

Isoelectric Point (pI)

25.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 73 - 174 1.9e-25 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 1 cut(s) 27
AclWI GGATC 3 cut(s) 42, 55, 214
AcsI RAATTY 3 cut(s) 35, 274, 492
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 252, 333
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 82
AluBI AGCT 2 cut(s) 74, 101
AluI AGCT 2 cut(s) 74, 101
AlwI GGATC 3 cut(s) 42, 55, 214
Aor13HI TCCGGA 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 3 cut(s) 35, 274, 492
AsuHPI GGTGA 1 cut(s) 44
BamHI GGATCC 1 cut(s) 47
BanI GGYRCC 1 cut(s) 367
BbsI GAAGAC 2 cut(s) 117, 413
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 84
BfaI CTAG 1 cut(s) 236
BfmI CTRYAG 3 cut(s) 75, 189, 327
BisI GCNGC 2 cut(s) 27, 240
BlsI GCNGC 2 cut(s) 28, 241
BmcAI AGTACT 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 84
BmiI GGNNCC 3 cut(s) 49, 196, 369
BmrFI CCNGG 1 cut(s) 84
BmsI GCATC 1 cut(s) 479
BoxI GACNNNNGTC 1 cut(s) 425
BpiI GAAGAC 2 cut(s) 117, 413
BpuEI CTTGAG 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 82, 83
BsaWI WCCGGW 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 82, 83
BseGI GGATG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 367
BsiSI CCGG 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 47, 206, 217
BspACI CCGC 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 3 cut(s) 49, 196, 369
BspPI GGATC 3 cut(s) 42, 55, 214
BspT107I GGYRCC 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 82, 83
BssMI GATC 3 cut(s) 47, 206, 217
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 3 cut(s) 289, 331, 424
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 50, 209, 220
BstMBI GATC 3 cut(s) 47, 206, 217
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstNI CCWGG 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 464
BstPAI GACNNNNGTC 1 cut(s) 425
BstSCI CCNGG 1 cut(s) 82
BstSFI CTRYAG 3 cut(s) 75, 189, 327
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 2 cut(s) 117, 413
BstX2I RGATCY 2 cut(s) 47, 206
BstYI RGATCY 2 cut(s) 47, 206
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 2 cut(s) 251, 332
CviAII CATG 1 cut(s) 461
CviJI RGCY 7 cut(s) 26, 74, 88, 101, 195, 242, 304
CviKI_1 RGCY 7 cut(s) 26, 74, 88, 101, 195, 242, 304
CviQI GTAC 2 cut(s) 251, 332
DdeI CTNAG 1 cut(s) 105
DpnI GATC 3 cut(s) 49, 208, 219
DpnII GATC 3 cut(s) 47, 206, 217
Eco57I CTGAAG 1 cut(s) 369
EcoRI GAATTC 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 1 cut(s) 464
FaiI YATR 9 cut(s) 43, 45, 57, 77, 96, 164, 462, 498, 535
FatI CATG 1 cut(s) 460
FauNDI CATATG 1 cut(s) 43
Fnu4HI GCNGC 2 cut(s) 27, 240
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 2 cut(s) 27, 240
FspBI CTAG 1 cut(s) 236
GluI GCNGC 2 cut(s) 27, 240
HapII CCGG 1 cut(s) 51
Hin1II CATG 1 cut(s) 464
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 99
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 4 cut(s) 199, 431, 445, 487
Hpy188III TCNNGA 2 cut(s) 51, 168
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 2 cut(s) 240, 394
HpyCH4III ACNGT 3 cut(s) 289, 331, 424
HpyCH4V TGCA 3 cut(s) 41, 308, 470
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 3 cut(s) 47, 206, 217
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 8 cut(s) 15, 64, 69, 78, 96, 153, 158, 177
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 479
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 2 cut(s) 7, 418
MalI GATC 3 cut(s) 49, 208, 219
MboI GATC 3 cut(s) 47, 206, 217
MboII GAAGA 3 cut(s) 122, 304, 418
MfeI CAATTG 1 cut(s) 513
MflI RGATCY 2 cut(s) 47, 206
MluCI AATT 5 cut(s) 35, 223, 274, 492, 513
MmeI TCCRAC 2 cut(s) 222, 409
MnlI CCTC 2 cut(s) 381, 394
MroI TCCGGA 1 cut(s) 50
MseI TTAA 4 cut(s) 69, 140, 272, 414
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 84
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeI CATATG 1 cut(s) 43
NdeII GATC 3 cut(s) 47, 206, 217
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 3 cut(s) 49, 196, 369
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 464
PasI CCCWGGG 1 cut(s) 83
PciI ACATGT 1 cut(s) 460
PkrI GCNGC 2 cut(s) 28, 241
PscI ACATGT 1 cut(s) 460
PshAI GACNNNNGTC 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 82
PspN4I GGNNCC 3 cut(s) 49, 196, 369
PsuI RGATCY 2 cut(s) 47, 206
RsaI GTAC 2 cut(s) 252, 333
RsaNI GTAC 2 cut(s) 251, 332
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 4 cut(s) 69, 140, 272, 414
SatI GCNGC 2 cut(s) 27, 240
Sau3AI GATC 3 cut(s) 47, 206, 217
ScaI AGTACT 1 cut(s) 333
ScrFI CCNGG 1 cut(s) 84
SetI ASST 4 cut(s) 76, 103, 413, 439
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 3 cut(s) 75, 189, 327
SmiMI CAYNNNNRTG 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 5 cut(s) 35, 223, 274, 492, 513
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 3 cut(s) 289, 331, 424
TaqII GACCGA 1 cut(s) 164
TasI AATT 5 cut(s) 35, 223, 274, 492, 513
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 4 cut(s) 69, 140, 272, 414
Tru9I TTAA 4 cut(s) 69, 140, 272, 414
TscAI CASTG 1 cut(s) 294
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 4 cut(s) 17, 111, 462, 485
TspRI CASTG 1 cut(s) 294
XapI RAATTY 3 cut(s) 35, 274, 492
XceI RCATGY 1 cut(s) 464
XspI CTAG 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.