RchiOBHm_Chr1g0323301

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001233
Physical Location & Seq
Reverse (-)
10852044 .. 10852568
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55321

Sequence Viewer

Length: 525 bp
ATGAATATTACAGAAAATTTCCCAGGTGAATTTGCTTTTGGATCTGGACATATCAATCCTTTAAAAGCTATAAACCCGGTGCTTGAGTATGAAGCTTCTAAAAAAGATTACACAAAGTTGCTCTGCATGTTGTTTGATGAGACCAAAGTGAGACTTATATCAGGAGATAACAGCACTTGTTCTGTAGGCTCTGACACAGGATCGCCAAAGGATCACAATTACCCTTCAATGGTAGCTATTGTTGCACCAATGACACCCTTTACGGTTAGAAGTCATAGAAGAGCTAAAAATGTTGACCATGCAAACTCCACTTACCCAGCTAAAATCTGGTCAAATTCTCAAGTTGACATCAAAGTGATGCCTGAAGTTCATGCCTTCAAGTCATTGAATGAGAAGAAGACTTTCGAAGTGACCATTATTGGAAGAGGTATACCAGATGGATCCCATGTATCTGCTTCACTGCTCTGGTCTGATGGTACTCATAGCGTTAGAAGTCCAATTCTTGTACAAAGCACAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

174

Amino Acids

19.05

Weight (kDa)

7.83

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 71 - 169 1.1e-21 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 430
AclWI GGATC 5 cut(s) 49, 208, 219, 435, 448
AcsI RAATTY 3 cut(s) 16, 29, 334
AcuI CTGAAG 1 cut(s) 384
AfaI GTAC 2 cut(s) 478, 507
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 228, 379, 388
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 5 cut(s) 68, 95, 236, 284, 320
AluI AGCT 5 cut(s) 68, 95, 236, 284, 320
Alw26I GTCTC 2 cut(s) 134, 145
AlwI GGATC 5 cut(s) 49, 208, 219, 435, 448
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 3 cut(s) 16, 29, 334
Asp700I GAANNNNTTC 1 cut(s) 401
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 405
BamHI GGATCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 404
BccI CCATC 2 cut(s) 431, 467
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 2 cut(s) 134, 145
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 24, 77
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 2 cut(s) 24, 77
BmsI GCATC 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 104, 324
BpuMI CCSGG 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 134, 145
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 4 cut(s) 41, 200, 211, 440
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 5 cut(s) 49, 208, 219, 435, 448
BspQI GCTCTTC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 22
BssMI GATC 4 cut(s) 41, 200, 211, 440
BssNAI GTATAC 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 274, 418
BstAUI TGTACA 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 405
BstKTI GATC 4 cut(s) 44, 203, 214, 443
BstMAI GTCTC 2 cut(s) 134, 145
BstMBI GATC 4 cut(s) 41, 200, 211, 440
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 22, 75
BstSFI CTRYAG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 41, 440
BstYI RGATCY 2 cut(s) 41, 440
BstZ17I GTATAC 1 cut(s) 431
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 458
Csp6I GTAC 2 cut(s) 477, 506
CviAII CATG 4 cut(s) 127, 299, 371, 446
CviJI RGCY 6 cut(s) 68, 95, 189, 236, 284, 320
CviKI_1 RGCY 6 cut(s) 68, 95, 189, 236, 284, 320
CviQI GTAC 2 cut(s) 477, 506
DpnI GATC 4 cut(s) 43, 202, 213, 442
DpnII GATC 4 cut(s) 41, 200, 211, 440
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 274, 418
EarI CTCTTC 2 cut(s) 274, 418
Eco31I GGTCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 4 cut(s) 130, 302, 374, 449
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 4 cut(s) 126, 298, 370, 445
FblI GTMKAC 1 cut(s) 430
Fnu4HI GCNGC 1 cut(s) 519
Fsp4HI GCNGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 519
GsaI CCCAGC 1 cut(s) 320
HapII CCGG 1 cut(s) 77
Hin1II CATG 4 cut(s) 130, 302, 374, 449
HincII GTYRAC 2 cut(s) 295, 346
HindII GTYRAC 2 cut(s) 295, 346
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 3 cut(s) 295, 346, 431
Hpy188I TCNGA 2 cut(s) 193, 472
Hpy188III TCNNGA 2 cut(s) 45, 162
Hpy8I GTNNAC 3 cut(s) 295, 346, 431
HpyAV CCTTC 2 cut(s) 234, 385
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 126, 245, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 130, 302, 374, 449
Kzo9I GATC 4 cut(s) 41, 200, 211, 440
LguI GCTCTTC 1 cut(s) 274
LweI GCATC 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 409
MalI GATC 4 cut(s) 43, 202, 213, 442
MboI GATC 4 cut(s) 41, 200, 211, 440
MboII GAAGA 4 cut(s) 291, 406, 409, 435
MflI RGATCY 2 cut(s) 41, 440
MluCI AATT 5 cut(s) 16, 29, 217, 334, 498
MnlI CCTC 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 353
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 2 cut(s) 24, 77
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 1 cut(s) 77
NdeII GATC 4 cut(s) 41, 200, 211, 440
NlaIII CATG 4 cut(s) 130, 302, 374, 449
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 130
NspV TTCGAA 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 22
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 442
PsuI RGATCY 2 cut(s) 41, 440
RsaI GTAC 2 cut(s) 478, 507
RsaNI GTAC 2 cut(s) 477, 506
RseI CAYNNNNRTG 1 cut(s) 353
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 4 cut(s) 41, 200, 211, 440
ScrFI CCNGG 2 cut(s) 24, 77
SetI ASST 7 cut(s) 28, 70, 97, 238, 286, 322, 430
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 405
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 2 cut(s) 83, 339
SmoI CTYRAG 2 cut(s) 83, 339
Sse9I AATT 5 cut(s) 16, 29, 217, 334, 498
SspI AATATT 1 cut(s) 7
StyD4I CCNGG 2 cut(s) 22, 75
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 405
TasI AATT 5 cut(s) 16, 29, 217, 334, 498
TatI WGTACW 1 cut(s) 505
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 17, 105, 359
TspRI CASTG 1 cut(s) 465
XapI RAATTY 3 cut(s) 16, 29, 334
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.