Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8214780.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 731

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8214780.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 730 bp

gatgcttcaagtaattgctccgagatcgaagctgggagctgttcagacggctgcttagatagtggtttagttaagggaaaagttgtgttatgtgacgtgactagcggagttgatgaggcttatgtttctggagcagtaggcttaattttgagagctgattatgatgatgtttctgaaattgtaccctttcctacaacagctcttgccaacaaagagcatagtctgataaagttgtacacgaactccaccaaagatcctcgagtaaaaatacaaagaagtgaagaagcaagggatactgccgcacctgttgttgcttcattctcttcacgtggaccaaattcaattctaccagaaattatcaagccagatataagtgccccaggggttactattttggctgccttttcacctattgcttcagttacagagagtcttcaagacacaaggcgtgtcaaatatagtatactatctggaacctccatgtcttgtccccacgcagctggtgcagctgcttatgttaaagcattccatcctgattggtctccagcagccatcaaatcatctctcatgactacagcttctcccatgaatgttactgacaatagtagtgccgctggtgaatttgcttatggatctggacatatcaatcctgtcaaagctatagacccagggcttgtgtatgaagcttctaaggaagactacataaagttgctatgctcggtcttggatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

243

Amino Acids

25.41

Weight (kDa)

4.92

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	463
AciI	CCGC	3 cut(s)	105, 300, 612
AclWI	GGATC	2 cut(s)	248, 640
AcsI	RAATTY	2 cut(s)	337, 620
AcuI	CTGAAG	1 cut(s)	402
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	183, 236
AgsI	TTSAA	3 cut(s)	9, 342, 437
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	2 cut(s)	379, 667
AluBI	AGCT	9 cut(s)	32, 39, 155, 200, 500, 509, 578, 659, 686
AluI	AGCT	9 cut(s)	32, 39, 155, 200, 500, 509, 578, 659, 686
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	248, 640
Ama87I	CYCGRG	1 cut(s)	258
ApeKI	GCWGC	6 cut(s)	51, 398, 497, 506, 509, 548
ApoI	RAATTY	2 cut(s)	337, 620
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	399, 629
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	379
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	425, 702
BbvI	GCAGC	6 cut(s)	38, 385, 496, 509, 518, 560
BccI	CCATC	2 cut(s)	537, 560
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	381, 669
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	573, 660
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	8 cut(s)	52, 300, 399, 498, 507, 510, 549, 612
BlsI	GCNGC	8 cut(s)	53, 301, 400, 499, 508, 511, 550, 613
Bme1390I	CCNGG	2 cut(s)	381, 669
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	258
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	475
BmrFI	CCNGG	2 cut(s)	381, 669
BpiI	GAAGAC	2 cut(s)	425, 702
BpmI	CTGGAG	2 cut(s)	150, 528
BsaAI	YACGTR	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	546
BsaJI	CCNNGG	4 cut(s)	379, 380, 667, 668
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 565, 595
BseBI	CCWGG	2 cut(s)	381, 669
BseDI	CCNNGG	4 cut(s)	379, 380, 667, 668
BseGI	GGATG	1 cut(s)	529
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	6 cut(s)	38, 385, 496, 509, 518, 560
BseYI	CCCAGC	1 cut(s)	32
BsgI	GTGCAG	1 cut(s)	525
BsiHKCI	CYCGRG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	474
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	524
Bso31I	GGTCTC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	3 cut(s)	24, 253, 632
BspACI	CCGC	3 cut(s)	105, 300, 612
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	248, 640
BspTNI	GGTCTC	1 cut(s)	546
BsrGI	TGTACA	1 cut(s)	234
BssECI	CCNNGG	4 cut(s)	379, 380, 667, 668
BssMI	GATC	3 cut(s)	24, 253, 632
BssNAI	GTATAC	1 cut(s)	464
Bst1107I	GTATAC	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	381, 669
Bst6I	CTCTTC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstAUI	TGTACA	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	55, 690
BstF5I	GGATG	1 cut(s)	529
BstKTI	GATC	4 cut(s)	27, 256, 635, 730
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	3 cut(s)	24, 253, 632
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 506
BstNI	CCWGG	2 cut(s)	381, 669
BstSCI	CCNGG	2 cut(s)	379, 667
BstSFI	CTRYAG	2 cut(s)	573, 660
BstSLI	GKGCMC	1 cut(s)	379
BstV1I	GCAGC	6 cut(s)	38, 385, 496, 509, 518, 560
BstV2I	GAAGAC	2 cut(s)	425, 702
BstX2I	RGATCY	2 cut(s)	253, 632
BstXI	CCANNNNNNTGG	1 cut(s)	500
BstYI	RGATCY	2 cut(s)	253, 632
BstZ17I	GTATAC	1 cut(s)	464
BsuI	GTATCC	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	529
CciI	TCATGA	1 cut(s)	567
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	182, 235
CviAII	CATG	3 cut(s)	481, 568, 586
CviQI	GTAC	2 cut(s)	182, 235
DdeI	CTNAG	2 cut(s)	55, 690
DpnI	GATC	4 cut(s)	26, 255, 634, 729
DpnII	GATC	3 cut(s)	24, 253, 632
Eam1104I	CTCTTC	1 cut(s)	328
EarI	CTCTTC	1 cut(s)	328
Eco31I	GGTCTC	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	1 cut(s)	402
Eco72I	CACGTG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	379, 667
FaeI	CATG	3 cut(s)	484, 571, 589
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	480, 567, 585
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	8 cut(s)	52, 300, 399, 498, 507, 510, 549, 612
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	8 cut(s)	52, 300, 399, 498, 507, 510, 549, 612
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	8 cut(s)	52, 300, 399, 498, 507, 510, 549, 612
GsaI	CCCAGC	1 cut(s)	36
GsuI	CTGGAG	2 cut(s)	150, 528
Hin1II	CATG	3 cut(s)	484, 571, 589
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	1 cut(s)	430
HphI	GGTGA	2 cut(s)	399, 629
Hpy166II	GTNNAC	3 cut(s)	237, 332, 464
Hpy188I	TCNGA	4 cut(s)	22, 46, 175, 225
Hpy188III	TCNNGA	6 cut(s)	129, 437, 471, 533, 568, 636
Hpy8I	GTNNAC	3 cut(s)	237, 332, 464
HpyCH4IV	ACGT	2 cut(s)	96, 328
HpyCH4V	TGCA	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 506
HpyF3I	CTNAG	2 cut(s)	55, 690
HpySE526I	ACGT	2 cut(s)	96, 328
Hsp92II	CATG	3 cut(s)	484, 571, 589
Kzo9I	GATC	3 cut(s)	24, 253, 632
LmnI	GCTCC	3 cut(s)	23, 36, 131
Lsp1109I	GCAGC	6 cut(s)	38, 385, 496, 509, 518, 560
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	96, 328
MaeIII	GTNAC	5 cut(s)	92, 97, 385, 421, 592
MalI	GATC	4 cut(s)	26, 255, 634, 729
MboI	GATC	3 cut(s)	24, 253, 632
MboII	GAAGA	4 cut(s)	293, 315, 425, 707
MflI	RGATCY	2 cut(s)	253, 632
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	7 cut(s)	13, 144, 177, 337, 342, 354, 620
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	3 cut(s)	109, 267, 487
MseI	TTAA	3 cut(s)	72, 143, 519
MspA1I	CMGCKG	3 cut(s)	500, 509, 614
MspR9I	CCNGG	2 cut(s)	381, 669
Mva1269I	GAATGC	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	381, 669
MwoI	GCNNNNNNNGC	2 cut(s)	503, 506
NdeII	GATC	3 cut(s)	24, 253, 632
NlaIII	CATG	3 cut(s)	484, 571, 589
NlaIV	GGNNCC	1 cut(s)	475
NmuCI	GTSAC	2 cut(s)	92, 97
PaeR7I	CTCGAG	1 cut(s)	258
PagI	TCATGA	1 cut(s)	567
PasI	CCCWGGG	2 cut(s)	380, 668
PctI	GAATGC	1 cut(s)	524
PkrI	GCNGC	8 cut(s)	53, 301, 400, 499, 508, 511, 550, 613
PleI	GAGTC	1 cut(s)	438
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	438
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	379, 667
PspCI	CACGTG	1 cut(s)	329
PspFI	CCCAGC	1 cut(s)	32
PspGI	CCWGG	2 cut(s)	379, 667
PspN4I	GGNNCC	1 cut(s)	475
PspPI	GGNCC	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	253, 632
PvuII	CAGCTG	2 cut(s)	500, 509
RsaI	GTAC	2 cut(s)	183, 236
RsaNI	GTAC	2 cut(s)	182, 235
SaqAI	TTAA	3 cut(s)	72, 143, 519
SatI	GCNGC	8 cut(s)	52, 300, 399, 498, 507, 510, 549, 612
Sau3AI	GATC	3 cut(s)	24, 253, 632
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	2 cut(s)	381, 669
SduI	GDGCHC	1 cut(s)	379
SfcI	CTRYAG	2 cut(s)	573, 660
Sfr274I	CTCGAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	7 cut(s)	13, 144, 177, 337, 342, 354, 620
SsiI	CCGC	3 cut(s)	105, 300, 612
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	379, 667
TaiI	ACGT	2 cut(s)	99, 331
TaqI	TCGA	2 cut(s)	27, 259
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	7 cut(s)	13, 144, 177, 337, 342, 354, 620
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	302, 614
Tru1I	TTAA	3 cut(s)	72, 143, 519
Tru9I	TTAA	3 cut(s)	72, 143, 519
TseFI	GTSAC	2 cut(s)	92, 97
TseI	GCWGC	6 cut(s)	51, 398, 497, 506, 509, 548
Tsp45I	GTSAC	2 cut(s)	92, 97
TspDTI	ATGAA	3 cut(s)	306, 602, 696
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	2 cut(s)	337, 620
XhoI	CTCGAG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	463
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.