Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

10926018 .. 10927358

Gene Structure 1341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCAAAGGGGGTACTTACATCAAATTCCGCAGGCAACAGTGGTCCTGATGATTCATCTGTTTCAAGTGTAGCACCATGGATACTTACAGTTGCAGCAAGTAGTACTGATCGTAGGATCATTGACAAGGTTGTTCTCGGAAATGGGACGGCCATGGTTGGGGCTTCAGTGAACACTTTCAAATTAAATGGGACAAATTTTCCATTGATCTATGGAAAAGATGCTTCAAGTAATTGCTCCGAGATCGAAGCTGGGAGCTGTTCAGACGGCTGCTTAGACCGTGGTTTAGTTAAGGGAAAAGTTGTGTTATGTGACGTGACTAGCGGAGTTGATGAGGCCTATGTTTCTGGAGCAGATCACAATTACCCTTCACTAGCAGCCGTTGTCACACCAAACAAATCTTTTTCGTTGAAATTTAACAGAAAAGTTAAGAATGTTGGCCTTGCAAACTCCACTTACAAGGCCACAATATTCGCCAACTCTACTCAAGTTGACGTCAAAGTGGTGCCTCAAGTTCTTTCCTTCAAGTCCTTGAATGAGGAGAAGGCTTTTGATGTGACAGTTGCCGGAAAAGGTTTGCCAGATGAAGTACAATCACATGTGTCTGCATCGCTGGTGTGGTCTGATGGAATTCATAGCGTTAGAAGTCCAATTCTTATCCACAACAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

224

Amino Acids

23.42

Weight (kDa)

7.66

Isoelectric Point (pI)

27.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	119 - 220	9.5e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	498
AccB1I	GGYRCC	1 cut(s)	505
AciI	CCGC	2 cut(s)	30, 324
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	25, 196, 413, 630
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	495
AfaI	GTAC	3 cut(s)	15, 106, 591
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	598
AgsI	TTSAA	6 cut(s)	66, 181, 228, 412, 526, 535
AjiI	CACGTC	1 cut(s)	316
AluBI	AGCT	2 cut(s)	251, 258
AluI	AGCT	2 cut(s)	251, 258
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	4 cut(s)	150, 336, 439, 462
ApeKI	GCWGC	3 cut(s)	95, 270, 377
ApoI	RAATTY	4 cut(s)	25, 196, 413, 630
Asp700I	GAANNNNTTC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	3 cut(s)	107, 257, 389
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	3 cut(s)	165, 283, 365
BciVI	GTATCC	1 cut(s)	75
BfaI	CTAG	2 cut(s)	321, 374
BfuI	GTATCC	1 cut(s)	75
BisI	GCNGC	3 cut(s)	96, 271, 378
BlsI	GCNGC	3 cut(s)	97, 272, 379
BmcAI	AGTACT	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	316
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	507
BmsI	GCATC	2 cut(s)	211, 617
BpmI	CTGGAG	1 cut(s)	369
BpuEI	CTTGAG	2 cut(s)	471, 495
BsaHI	GRCGYC	1 cut(s)	495
BsaJI	CCNNGG	3 cut(s)	77, 153, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	77, 153, 280
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	107, 257, 389
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	4 cut(s)	152, 338, 441, 464
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	567
BslFI	GGGAC	2 cut(s)	160, 205
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmFI	GGGAC	2 cut(s)	160, 205
BsnI	GGCC	4 cut(s)	152, 338, 441, 464
Bsp143I	GATC	5 cut(s)	109, 117, 207, 243, 355
Bsp19I	CCATGG	2 cut(s)	77, 153
BspACI	CCGC	2 cut(s)	30, 324
BspANI	GGCC	4 cut(s)	152, 338, 441, 464
BspLI	GGNNCC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	505
BssECI	CCNNGG	3 cut(s)	77, 153, 280
BssMI	GATC	5 cut(s)	109, 117, 207, 243, 355
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	2 cut(s)	77, 153
Bst4CI	ACNGT	4 cut(s)	41, 91, 281, 562
BstACI	GRCGYC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	1 cut(s)	274
BstDSI	CCRYGG	3 cut(s)	77, 153, 280
BstKTI	GATC	5 cut(s)	112, 120, 210, 246, 358
BstMBI	GATC	5 cut(s)	109, 117, 207, 243, 355
BstNSI	RCATGY	1 cut(s)	602
BstV1I	GCAGC	3 cut(s)	107, 257, 389
BsuI	GTATCC	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	152, 338, 441, 464
BtgI	CCRYGG	3 cut(s)	77, 153, 280
BtgZI	GCGATG	1 cut(s)	594
BtrI	CACGTC	1 cut(s)	316
BtsIMutI	CAGTG	2 cut(s)	46, 174
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	3 cut(s)	14, 105, 590
CviAII	CATG	3 cut(s)	78, 154, 599
CviQI	GTAC	3 cut(s)	14, 105, 590
DdeI	CTNAG	1 cut(s)	274
DpnI	GATC	5 cut(s)	111, 119, 209, 245, 357
DpnII	GATC	5 cut(s)	109, 117, 207, 243, 355
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	77, 153
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	150
EcoRI	GAATTC	1 cut(s)	630
EcoT14I	CCWWGG	2 cut(s)	77, 153
ErhI	CCWWGG	2 cut(s)	77, 153
FaeI	CATG	3 cut(s)	81, 157, 602
FaiI	YATR	7 cut(s)	79, 155, 213, 310, 342, 600, 636
FaqI	GGGAC	2 cut(s)	160, 205
FatI	CATG	3 cut(s)	77, 153, 598
Fnu4HI	GCNGC	3 cut(s)	96, 271, 378
Fsp4HI	GCNGC	3 cut(s)	96, 271, 378
FspBI	CTAG	2 cut(s)	321, 374
GluI	GCNGC	3 cut(s)	96, 271, 378
GsaI	CCCAGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	4 cut(s)	152, 338, 441, 464
HapII	CCGG	1 cut(s)	567
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	3 cut(s)	81, 157, 602
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	567
Hpy166II	GTNNAC	2 cut(s)	172, 493
Hpy188I	TCNGA	4 cut(s)	140, 241, 265, 625
Hpy188III	TCNNGA	2 cut(s)	47, 348
Hpy8I	GTNNAC	2 cut(s)	172, 493
HpyAV	CCTTC	3 cut(s)	378, 532, 538
HpyCH4III	ACNGT	4 cut(s)	41, 91, 281, 562
HpyCH4IV	ACGT	2 cut(s)	315, 495
HpyCH4V	TGCA	3 cut(s)	95, 446, 608
HpyF3I	CTNAG	1 cut(s)	274
HpySE526I	ACGT	2 cut(s)	315, 495
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	81, 157, 602
Kzo9I	GATC	5 cut(s)	109, 117, 207, 243, 355
LmnI	GCTCC	3 cut(s)	242, 255, 350
LpnPI	CCDG	7 cut(s)	18, 60, 237, 333, 580, 594, 599
Lsp1109I	GCAGC	3 cut(s)	107, 257, 389
LweI	GCATC	2 cut(s)	211, 617
MaeI	CTAG	2 cut(s)	321, 374
MaeII	ACGT	2 cut(s)	315, 495
MaeIII	GTNAC	4 cut(s)	311, 316, 385, 556
MalI	GATC	5 cut(s)	111, 119, 209, 245, 357
MboI	GATC	5 cut(s)	109, 117, 207, 243, 355
MluCI	AATT	8 cut(s)	25, 182, 196, 232, 361, 413, 630, 651
MnlI	CCTC	3 cut(s)	328, 519, 532
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	4 cut(s)	185, 291, 417, 429
MspI	CCGG	1 cut(s)	567
NcoI	CCATGG	2 cut(s)	77, 153
NdeII	GATC	5 cut(s)	109, 117, 207, 243, 355
NlaIII	CATG	3 cut(s)	81, 157, 602
NlaIV	GGNNCC	1 cut(s)	507
NmuCI	GTSAC	4 cut(s)	311, 316, 385, 556
NspI	RCATGY	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	97, 272, 379
PscI	ACATGT	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	3 cut(s)	15, 106, 591
RsaNI	GTAC	3 cut(s)	14, 105, 590
SaqAI	TTAA	4 cut(s)	185, 291, 417, 429
SatI	GCNGC	3 cut(s)	96, 271, 378
Sau3AI	GATC	5 cut(s)	109, 117, 207, 243, 355
Sau96I	GGNCC	1 cut(s)	44
ScaI	AGTACT	1 cut(s)	106
SetI	ASST	6 cut(s)	132, 253, 260, 318, 498, 577
SfaNI	GCATC	2 cut(s)	211, 617
SinI	GGWCC	1 cut(s)	44
SmlI	CTYRAG	2 cut(s)	486, 510
SmoI	CTYRAG	2 cut(s)	486, 510
Sse9I	AATT	8 cut(s)	25, 182, 196, 232, 361, 413, 630, 651
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	2 cut(s)	30, 324
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	2 cut(s)	321, 374
StuI	AGGCCT	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	77, 153
TaaI	ACNGT	4 cut(s)	41, 91, 281, 562
TaiI	ACGT	2 cut(s)	318, 498
TaqI	TCGA	1 cut(s)	246
TasI	AATT	8 cut(s)	25, 182, 196, 232, 361, 413, 630, 651
TatI	WGTACW	2 cut(s)	104, 589
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	4 cut(s)	185, 291, 417, 429
Tru9I	TTAA	4 cut(s)	185, 291, 417, 429
TscAI	CASTG	2 cut(s)	46, 174
TseFI	GTSAC	4 cut(s)	311, 316, 385, 556
TseI	GCWGC	3 cut(s)	95, 270, 377
Tsp45I	GTSAC	4 cut(s)	311, 316, 385, 556
TspDTI	ATGAA	3 cut(s)	45, 600, 623
TspRI	CASTG	2 cut(s)	46, 174
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	4 cut(s)	25, 196, 413, 630
XceI	RCATGY	1 cut(s)	602
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	321, 374
ZraI	GACGTC	1 cut(s)	496
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.