Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8297809.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

186 .. 842

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8297809.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgtcctgtccgcacgtgagcggcctcgccgcgctgctcaagggggtccacccggagtggagccccgccgcgatccgttcggcgctgatgaccaccgcctacacggcctacaagaatgggcagaagttgcaggacgtggctaccggaaagccatccacgcccttcgatcacggtgctggacacgtggaccccgtatcggccctcaatccggggctggtctacgatctaacggtggaggattatctaaactttctctgtgcgttgaactacaccgagtccgaaatcgacagcttggctaaaagaaagtttacttgcgacgaaagcaagagttacagcgttagggatctgaactacccttcttttgctgtaaatttgatgagcggctcgtcgtcttcgtccactgtattgaagtactcgaggactctcaccaatgtgggcccggccggaacgtacaaggcgactgcgaccatggatgacccgtcggtgaagatttcggtggagccagagtcgttgagtttcgccgcggcgaatgagaagaagagttacacggtgacgttcgcggtaacggggtcgagatcattgagcagctttgggaggctcgagtggtctgatgggaagcacgttgttggaagtccgatagcaatcagccggagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009791 GO:0009845 GO:0009987 GO:0010154 GO:0010191 GO:0010214 GO:0016787 GO:0017171 GO:0019538 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0043170 GO:0044237 GO:0044238 GO:0044464 GO:0048046 GO:0048316 GO:0048359 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

218

Amino Acids

23.29

Weight (kDa)

6.95

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	21, 381
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	4 cut(s)	32, 71, 524, 560
AclWI	GGATC	2 cut(s)	67, 351
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	370
AcvI	CACGTG	2 cut(s)	16, 184
AfaI	GTAC	2 cut(s)	413, 452
AfiI	CCNNNNNNNGG	2 cut(s)	196, 208
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	265, 409
AjiI	CACGTC	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	431
AluBI	AGCT	2 cut(s)	291, 588
AluI	AGCT	2 cut(s)	291, 588
AlwI	GGATC	2 cut(s)	67, 351
Ama87I	CYCGRG	2 cut(s)	415, 599
AoxI	GGCC	5 cut(s)	22, 105, 198, 436, 441
ApaI	GGGCCC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	34, 585
ApoI	RAATTY	1 cut(s)	370
AspLEI	GCGC	2 cut(s)	34, 85
AspS9I	GGNCC	5 cut(s)	46, 187, 199, 436, 437
AsuC2I	CCSGG	3 cut(s)	53, 210, 440
AsuHPI	GGTGA	3 cut(s)	418, 496, 562
AvaI	CYCGRG	2 cut(s)	415, 599
AvaII	GGWCC	2 cut(s)	46, 187
BaeGI	GKGCMC	1 cut(s)	440
BanII	GRGCYC	2 cut(s)	65, 440
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbrPI	CACGTG	2 cut(s)	16, 184
BbsI	GAAGAC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	21, 597
BccI	CCATC	2 cut(s)	160, 605
BceAI	ACGGC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcnI	CCSGG	3 cut(s)	53, 210, 440
BfoI	RGCGCY	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	8 cut(s)	22, 30, 35, 69, 382, 522, 525, 586
BlsI	GCNGC	8 cut(s)	23, 31, 36, 70, 383, 523, 526, 587
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	3 cut(s)	53, 210, 440
Bme18I	GGWCC	2 cut(s)	46, 187
BmeT110I	CYCGRG	2 cut(s)	415, 599
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	5 cut(s)	46, 187, 199, 436, 437
BmiI	GGNNCC	5 cut(s)	47, 62, 189, 438, 501
BmrFI	CCNGG	3 cut(s)	53, 210, 440
BpiI	GAAGAC	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	23
BpuMI	CCSGG	3 cut(s)	53, 210, 440
BsaAI	YACGTR	2 cut(s)	16, 184
BsaBI	GATNNNNATC	1 cut(s)	641
BsaJI	CCNNGG	3 cut(s)	209, 468, 522
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 208
Bse8I	GATNNNNATC	1 cut(s)	641
BseDI	CCNNGG	3 cut(s)	209, 468, 522
BseGI	GGATG	2 cut(s)	152, 478
BseJI	GATNNNNATC	1 cut(s)	641
BseLI	CCNNNNNNNGG	2 cut(s)	196, 208
BseSI	GKGCMC	1 cut(s)	440
BseX3I	CGGCCG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	21, 597
Bsh1236I	CGCG	4 cut(s)	32, 71, 524, 560
Bsh1285I	CGRYCG	1 cut(s)	444
BshFI	GGCC	5 cut(s)	24, 107, 200, 438, 443
BsiEI	CGRYCG	1 cut(s)	444
BsiHKCI	CYCGRG	2 cut(s)	415, 599
BsiSI	CCGG	6 cut(s)	53, 144, 209, 440, 444, 649
BslI	CCNNNNNNNGG	2 cut(s)	196, 208
BsnI	GGCC	5 cut(s)	24, 107, 200, 438, 443
BsoBI	CYCGRG	2 cut(s)	415, 599
Bsp120I	GGGCCC	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	65, 440
Bsp143I	GATC	5 cut(s)	72, 166, 223, 343, 575
Bsp19I	CCATGG	1 cut(s)	468
BspANI	GGCC	5 cut(s)	24, 107, 200, 438, 443
BspFNI	CGCG	4 cut(s)	32, 71, 524, 560
BspLI	GGNNCC	5 cut(s)	47, 62, 189, 438, 501
BspPI	GGATC	2 cut(s)	67, 351
BsrBI	CCGCTC	2 cut(s)	21, 381
BssECI	CCNNGG	3 cut(s)	209, 468, 522
BssMI	GATC	5 cut(s)	72, 166, 223, 343, 575
BssT1I	CCWWGG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	173, 232, 403, 550
Bst6I	CTCTTC	1 cut(s)	533
BstAPI	GCANNNNNTGC	1 cut(s)	127
BstBAI	YACGTR	2 cut(s)	16, 184
BstDSI	CCRYGG	2 cut(s)	468, 522
BstF5I	GGATG	2 cut(s)	152, 478
BstFNI	CGCG	4 cut(s)	32, 71, 524, 560
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	2 cut(s)	34, 85
BstKTI	GATC	5 cut(s)	75, 169, 226, 346, 578
BstMBI	GATC	5 cut(s)	72, 166, 223, 343, 575
BstMCI	CGRYCG	1 cut(s)	444
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 127, 157, 321
BstSCI	CCNGG	3 cut(s)	51, 208, 438
BstSLI	GKGCMC	1 cut(s)	440
BstUI	CGCG	4 cut(s)	32, 71, 524, 560
BstV1I	GCAGC	2 cut(s)	21, 597
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	441
BsuRI	GGCC	5 cut(s)	24, 107, 200, 438, 443
BtgI	CCRYGG	2 cut(s)	468, 522
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	152, 478
BtsIMutI	CAGTG	1 cut(s)	399
CfoI	GCGC	2 cut(s)	34, 85
Cfr13I	GGNCC	5 cut(s)	46, 187, 199, 436, 437
Cfr42I	CCGCGG	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	412, 451
CviAII	CATG	1 cut(s)	469
CviQI	GTAC	2 cut(s)	412, 451
DpnI	GATC	5 cut(s)	74, 168, 225, 345, 577
DpnII	GATC	5 cut(s)	72, 166, 223, 343, 575
EaeI	YGGCCR	1 cut(s)	441
EagI	CGGCCG	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EclXI	CGGCCG	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	468
Eco24I	GRGCYC	2 cut(s)	65, 440
Eco47I	GGWCC	2 cut(s)	46, 187
Eco52I	CGGCCG	1 cut(s)	441
Eco72I	CACGTG	2 cut(s)	16, 184
Eco88I	CYCGRG	2 cut(s)	415, 599
EcoT14I	CCWWGG	1 cut(s)	468
EcoT38I	GRGCYC	2 cut(s)	65, 440
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	1 cut(s)	472
FaiI	YATR	1 cut(s)	470
FatI	CATG	1 cut(s)	468
FauI	CCCGC	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	22, 30, 35, 69, 382, 522, 525, 586
FokI	GGATG	2 cut(s)	139, 485
FriOI	GRGCYC	2 cut(s)	65, 440
Fsp4HI	GCNGC	8 cut(s)	22, 30, 35, 69, 382, 522, 525, 586
GlaI	GCGC	2 cut(s)	33, 84
GluI	GCNGC	8 cut(s)	22, 30, 35, 69, 382, 522, 525, 586
HaeII	RGCGCY	1 cut(s)	86
HaeIII	GGCC	5 cut(s)	24, 107, 200, 438, 443
HapII	CCGG	6 cut(s)	53, 144, 209, 440, 444, 649
HhaI	GCGC	2 cut(s)	34, 85
Hin1II	CATG	1 cut(s)	472
Hin6I	GCGC	2 cut(s)	32, 83
HinP1I	GCGC	2 cut(s)	32, 83
HinfI	GANTC	3 cut(s)	275, 421, 506
HpaII	CCGG	6 cut(s)	53, 144, 209, 440, 444, 649
HphI	GGTGA	3 cut(s)	418, 496, 562
Hpy166II	GTNNAC	5 cut(s)	49, 187, 220, 309, 399
Hpy188I	TCNGA	4 cut(s)	280, 348, 610, 636
Hpy188III	TCNNGA	1 cut(s)	573
Hpy8I	GTNNAC	5 cut(s)	49, 187, 220, 309, 399
Hpy99I	CGWCG	3 cut(s)	320, 391, 484
HpyAV	CCTTC	2 cut(s)	172, 366
HpyCH4III	ACNGT	4 cut(s)	173, 232, 403, 550
HpyCH4IV	ACGT	6 cut(s)	15, 135, 183, 449, 554, 621
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 127, 157, 321
HpySE526I	ACGT	6 cut(s)	15, 135, 183, 449, 554, 621
Hsp92II	CATG	1 cut(s)	472
HspAI	GCGC	2 cut(s)	32, 83
KspI	CCGCGG	1 cut(s)	525
Kzo9I	GATC	5 cut(s)	72, 166, 223, 343, 575
LmnI	GCTCC	2 cut(s)	60, 499
Lsp1109I	GCAGC	2 cut(s)	21, 597
MaeII	ACGT	6 cut(s)	15, 135, 183, 449, 554, 621
MaeIII	GTNAC	4 cut(s)	329, 542, 550, 562
MalI	GATC	5 cut(s)	74, 168, 225, 345, 577
MbiI	CCGCTC	2 cut(s)	21, 381
MboI	GATC	5 cut(s)	72, 166, 223, 343, 575
MboII	GAAGA	4 cut(s)	384, 499, 547, 550
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	65, 440
MluCI	AATT	1 cut(s)	370
MlyI	GAGTC	3 cut(s)	284, 415, 515
MmeI	TCCRAC	1 cut(s)	607
MnlI	CCTC	5 cut(s)	35, 212, 229, 411, 588
MslI	CAYNNNNRTG	1 cut(s)	431
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	6 cut(s)	53, 144, 209, 440, 444, 649
MspR9I	CCNGG	3 cut(s)	53, 210, 440
MvnI	CGCG	4 cut(s)	32, 71, 524, 560
MwoI	GCNNNNNNNGC	4 cut(s)	104, 127, 157, 321
NciI	CCSGG	3 cut(s)	53, 210, 440
NcoI	CCATGG	1 cut(s)	468
NdeII	GATC	5 cut(s)	72, 166, 223, 343, 575
NlaIII	CATG	1 cut(s)	472
NlaIV	GGNNCC	5 cut(s)	47, 62, 189, 438, 501
NmuCI	GTSAC	1 cut(s)	550
OliI	CACNNNNGTG	1 cut(s)	431
PaeR7I	CTCGAG	2 cut(s)	415, 599
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 392, 455
PkrI	GCNGC	8 cut(s)	23, 31, 36, 70, 383, 523, 526, 587
PleI	GAGTC	3 cut(s)	283, 415, 514
PmaCI	CACGTG	2 cut(s)	16, 184
PmlI	CACGTG	2 cut(s)	16, 184
PpsI	GAGTC	3 cut(s)	283, 415, 514
Ppu21I	YACGTR	2 cut(s)	16, 184
PspCI	CACGTG	2 cut(s)	16, 184
PspN4I	GGNNCC	5 cut(s)	47, 62, 189, 438, 501
PspOMI	GGGCCC	1 cut(s)	436
PspPI	GGNCC	5 cut(s)	46, 187, 199, 436, 437
PspXI	VCTCGAGB	2 cut(s)	415, 599
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	413, 452
RsaNI	GTAC	2 cut(s)	412, 451
RseI	CAYNNNNRTG	1 cut(s)	431
SacII	CCGCGG	1 cut(s)	525
SatI	GCNGC	8 cut(s)	22, 30, 35, 69, 382, 522, 525, 586
Sau3AI	GATC	5 cut(s)	72, 166, 223, 343, 575
Sau96I	GGNCC	5 cut(s)	46, 187, 199, 436, 437
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	3 cut(s)	284, 415, 515
ScrFI	CCNGG	3 cut(s)	53, 210, 440
SduI	GDGCHC	2 cut(s)	65, 440
SetI	ASST	8 cut(s)	18, 138, 186, 293, 452, 557, 590, 624
Sfr274I	CTCGAG	2 cut(s)	415, 599
Sfr303I	CCGCGG	1 cut(s)	525
SgrBI	CCGCGG	1 cut(s)	525
SinI	GGWCC	2 cut(s)	46, 187
SlaI	CTCGAG	2 cut(s)	415, 599
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	3 cut(s)	38, 415, 599
SmoI	CTYRAG	3 cut(s)	38, 415, 599
Sse9I	AATT	1 cut(s)	370
StyD4I	CCNGG	3 cut(s)	51, 208, 438
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	173, 232, 403, 550
TaiI	ACGT	6 cut(s)	18, 138, 186, 452, 557, 624
TaqI	TCGA	5 cut(s)	165, 285, 416, 572, 600
TasI	AATT	1 cut(s)	370
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	6 cut(s)	24, 32, 71, 384, 524, 527
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	2 cut(s)	34, 585
Tsp45I	GTSAC	1 cut(s)	550
TspGWI	ACGGA	1 cut(s)	65
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	46, 187
XapI	RAATTY	1 cut(s)	370
XhoI	CTCGAG	2 cut(s)	415, 599
XmiI	GTMKAC	1 cut(s)	219
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.