Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

10943402 .. 10944118

Gene Structure 717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55336

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTTCTTTCTCTTCACGTGGACCAAATTTACTTTTACCTGAAATTATCAAGCCCGATGTAAGAGCCCCAGGGGTGGATATCTTAGCTGCATATATTCCTATTGCTTCTATCTCATGTAGCCAAGATGACAAGCGGCACCTGAATTATAGTATTCTATCTGGAACCTCCATGTCTTGTCTGCACGCGGCTGGTGCAGCTGCATATATGAAAGAAGTCCACCCTGATTGGTCTCCAGCAGCCATCAAATCATCTCCTATGACTACTGCTTGGGCTATTAACATCACTAACAAAAATAATGCCCCTGGTGAATTTGCTAATGGATCTGGACATATAAATCCTATTCAAGCTATAAACCTAGGGCTAGTGTATGAAGCATTTAAGGAAGATTACAAAAAGTTGCTTTGCTTGGTCATAGGCAAAGAAAAAGTTAGACTTATATCAAGAGATAACAACACCACTTGCCCTACTGGCTCTGACACAGGATCTCCATGGGATCACAATTATCCTTCACTGGCAGTTGTTGTCACACCAATGGAACCTTTTTCGATCAAATTCGAGAGGATTGTAAAAAATGTTGGCCTTCCAAACTCCACTTATAAGGCAAATATTTTGGCAACCTCCACTTACAAGGCCAACTTCACACAATTCAACATCAAAGTTTTGCCTCAAGTTCTTTCCCTCGAGTCCTTGAATGAGGAGATCGAAGACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

238

Amino Acids

25.94

Weight (kDa)

6.51

Isoelectric Point (pI)

45.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	1 - 99	1.1e-15	Subtilase family
fn3_6	PF17766	166 - 234	1.9e-08	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	138
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	136, 188
AclWI	GGATC	3 cut(s)	331, 493, 504
AcsI	RAATTY	3 cut(s)	28, 311, 554
AcvI	CACGTG	1 cut(s)	20
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	347, 652, 694
AjnI	CCWGG	2 cut(s)	70, 304
AluBI	AGCT	3 cut(s)	89, 200, 350
AluI	AGCT	3 cut(s)	89, 200, 350
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	3 cut(s)	331, 493, 504
Ama87I	CYCGRG	1 cut(s)	683
AoxI	GGCC	2 cut(s)	580, 633
ApeKI	GCWGC	4 cut(s)	89, 197, 200, 239
ApoI	RAATTY	3 cut(s)	28, 311, 554
AspA2I	CCTAGG	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	23
AvrII	CCTAGG	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	70
BbrPI	CACGTG	1 cut(s)	20
BbvI	GCAGC	4 cut(s)	76, 187, 209, 251
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	72, 306
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	2 cut(s)	359, 365
BglI	GCCNNNNNGGC	1 cut(s)	471
BisI	GCNGC	6 cut(s)	90, 137, 189, 198, 201, 240
BlnI	CCTAGG	1 cut(s)	358
BlsI	GCNGC	6 cut(s)	91, 138, 190, 199, 202, 241
Bme1390I	CCNGG	2 cut(s)	72, 306
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	683
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	140, 166, 540
BmrFI	CCNGG	2 cut(s)	72, 306
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	5 cut(s)	70, 71, 304, 358, 491
BsaXI	ACNNNNNCTCC	2 cut(s)	472, 502
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	475, 519
BseBI	CCWGG	2 cut(s)	72, 306
BseDI	CCNNGG	5 cut(s)	70, 71, 304, 358, 491
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	475, 519
BseRI	GAGGAG	1 cut(s)	713
BseXI	GCAGC	4 cut(s)	76, 187, 209, 251
BsgI	GTGCAG	2 cut(s)	167, 216
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	582, 635
BshNI	GGYRCC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	683
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	582, 635
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	5 cut(s)	323, 485, 496, 549, 702
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	2 cut(s)	136, 188
BspANI	GGCC	2 cut(s)	582, 635
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	3 cut(s)	140, 166, 540
BspPI	GGATC	3 cut(s)	331, 493, 504
BspT107I	GGYRCC	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	475, 519
BssECI	CCNNGG	5 cut(s)	70, 71, 304, 358, 491
BssMI	GATC	5 cut(s)	323, 485, 496, 549, 702
BssT1I	CCWWGG	2 cut(s)	358, 491
Bst2UI	CCWGG	2 cut(s)	72, 306
Bst6I	CTCTTC	1 cut(s)	19
BstBAI	YACGTR	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	491
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	5 cut(s)	326, 488, 499, 552, 705
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	5 cut(s)	323, 485, 496, 549, 702
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 197, 471
BstNI	CCWGG	2 cut(s)	72, 306
BstSCI	CCNGG	2 cut(s)	70, 304
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	76, 187, 209, 251
BstX2I	RGATCY	2 cut(s)	323, 485
BstYI	RGATCY	2 cut(s)	323, 485
BsuRI	GGCC	2 cut(s)	582, 635
BtgI	CCRYGG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	23
CspCI	CAANNNNNGTGG	2 cut(s)	209, 244
CviAII	CATG	3 cut(s)	117, 172, 492
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	5 cut(s)	325, 487, 498, 551, 704
DpnII	GATC	5 cut(s)	323, 485, 496, 549, 702
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	358, 491
Eco24I	GRGCYC	1 cut(s)	70
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	23
Eco72I	CACGTG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	683
EcoRII	CCWGG	2 cut(s)	70, 304
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	358, 491
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	358, 491
FaeI	CATG	3 cut(s)	120, 175, 495
FalI	AAGNNNNNCTT	4 cut(s)	420, 452, 623, 655
FatI	CATG	3 cut(s)	116, 171, 491
Fnu4HI	GCNGC	6 cut(s)	90, 137, 189, 198, 201, 240
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	6 cut(s)	90, 137, 189, 198, 201, 240
FspBI	CTAG	2 cut(s)	359, 365
GluI	GCNGC	6 cut(s)	90, 137, 189, 198, 201, 240
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	582, 635
Hin1II	CATG	3 cut(s)	120, 175, 495
HinfI	GANTC	1 cut(s)	686
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	23, 220
Hpy188I	TCNGA	1 cut(s)	478
Hpy188III	TCNNGA	4 cut(s)	162, 327, 444, 559
Hpy8I	GTNNAC	2 cut(s)	23, 220
HpyAV	CCTTC	2 cut(s)	519, 593
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	92, 184, 197, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 197, 471
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	120, 175, 495
Kzo9I	GATC	5 cut(s)	323, 485, 496, 549, 702
Lsp1109I	GCAGC	4 cut(s)	76, 187, 209, 251
MaeI	CTAG	2 cut(s)	359, 365
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	526
MalI	GATC	5 cut(s)	325, 487, 498, 551, 704
MboI	GATC	5 cut(s)	323, 485, 496, 549, 702
MboII	GAAGA	2 cut(s)	6, 398
MflI	RGATCY	2 cut(s)	323, 485
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	7 cut(s)	28, 45, 145, 311, 502, 554, 647
MlyI	GAGTC	1 cut(s)	695
MnlI	CCTC	6 cut(s)	178, 555, 631, 678, 691, 692
MseI	TTAA	2 cut(s)	279, 381
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	72, 306
MvaI	CCWGG	2 cut(s)	72, 306
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	194, 197, 471
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	323, 485, 496, 549, 702
NlaIII	CATG	3 cut(s)	120, 175, 495
NlaIV	GGNNCC	3 cut(s)	140, 166, 540
NmuCI	GTSAC	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	683
PasI	CCCWGGG	1 cut(s)	71
PkrI	GCNGC	6 cut(s)	91, 138, 190, 199, 202, 241
PleI	GAGTC	1 cut(s)	694
PmaCI	CACGTG	1 cut(s)	20
PmlI	CACGTG	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	694
Ppu21I	YACGTR	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	70, 304
PspCI	CACGTG	1 cut(s)	20
PspGI	CCWGG	2 cut(s)	70, 304
PspN4I	GGNNCC	3 cut(s)	140, 166, 540
PspPI	GGNCC	1 cut(s)	23
PspXI	VCTCGAGB	1 cut(s)	683
PsuI	RGATCY	2 cut(s)	323, 485
PvuII	CAGCTG	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	279, 381
SatI	GCNGC	6 cut(s)	90, 137, 189, 198, 201, 240
Sau3AI	GATC	5 cut(s)	323, 485, 496, 549, 702
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	2 cut(s)	72, 306
SduI	GDGCHC	1 cut(s)	70
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	669, 683
SmoI	CTYRAG	2 cut(s)	669, 683
Sse9I	AATT	7 cut(s)	28, 45, 145, 311, 502, 554, 647
SsiI	CCGC	2 cut(s)	136, 188
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	2 cut(s)	359, 365
StyD4I	CCNGG	2 cut(s)	70, 304
StyI	CCWWGG	2 cut(s)	358, 491
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	4 cut(s)	548, 558, 684, 705
TasI	AATT	7 cut(s)	28, 45, 145, 311, 502, 554, 647
TauI	GCSGC	2 cut(s)	139, 191
Tru1I	TTAA	2 cut(s)	279, 381
Tru9I	TTAA	2 cut(s)	279, 381
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	526
TseI	GCWGC	4 cut(s)	89, 197, 200, 239
Tsp45I	GTSAC	1 cut(s)	526
TspDTI	ATGAA	2 cut(s)	224, 387
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	3 cut(s)	28, 311, 554
XhoI	CTCGAG	1 cut(s)	683
XmaJI	CCTAGG	1 cut(s)	358
XspI	CTAG	2 cut(s)	359, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.