Rroxscaffold_4G00326560

Subtilisin-like serine endopeptidase family protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
58743809 .. 58744202
394 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326560.1

Sequence Viewer

Length: 282 bp
ATGTCTTATCCACACGGGGCTGGTGCAGCTGCATATGTTAAAGCATTAATTCTACCCGACGCTATAAACCCGGGGCTGGTTTATGAAGCTTCTAAGGATGATTACATAAAACTCCTCTGCTCGGTATTGGGAGAGGGCGATGTTAGACTTATATCGGGAGATAACAGCACTTGCCCTCCACACTCGGATAAAGACGCTCTAAAGGATCACAATTACCCTTCGCTAGCAGCTGCTGTTCCACCAAATAAAGCTTTTACTTGTGAAATTTCACATAGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

9.78

Weight (kDa)

5.33

Isoelectric Point (pI)

30.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 76, 121
AluBI AGCT 4 cut(s) 29, 89, 230, 251
AluI AGCT 4 cut(s) 29, 89, 230, 251
AlwI GGATC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 70
ApeKI GCWGC 4 cut(s) 26, 29, 227, 230
ApoI RAATTY 1 cut(s) 264
AseI ATTAAT 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 71, 72
AsuNHI GCTAGC 1 cut(s) 223
AvaI CYCGRG 1 cut(s) 70
BbvI GCAGC 4 cut(s) 16, 38, 217, 239
BcnI CCSGG 2 cut(s) 71, 72
BfaI CTAG 1 cut(s) 224
BisI GCNGC 4 cut(s) 27, 30, 228, 231
BlsI GCNGC 4 cut(s) 28, 31, 229, 232
Bme1390I CCNGG 2 cut(s) 71, 72
BmeT110I CYCGRG 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 71, 72
BmtI GCTAGC 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 71, 72
BsaJI CCNNGG 2 cut(s) 70, 71
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 121
BseDI CCNNGG 2 cut(s) 70, 71
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 76, 121
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 4 cut(s) 16, 38, 217, 239
BsgI GTGCAG 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 76, 121
BsoBI CYCGRG 1 cut(s) 70
Bsp143I GATC 1 cut(s) 205
BspOI GCTAGC 1 cut(s) 227
BspPI GGATC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 70, 71
BssMI GATC 1 cut(s) 205
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 69, 70
BstV1I GCAGC 4 cut(s) 16, 38, 217, 239
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 233
Cfr9I CCCGGG 1 cut(s) 70
CseI GACGC 2 cut(s) 68, 203
CviJI RGCY 6 cut(s) 20, 29, 76, 89, 230, 251
CviKI_1 RGCY 6 cut(s) 20, 29, 76, 89, 230, 251
DdeI CTNAG 1 cut(s) 93
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 70
FaiI YATR 7 cut(s) 34, 36, 65, 84, 107, 152, 273
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 4 cut(s) 27, 30, 228, 231
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 27, 30, 228, 231
FspBI CTAG 1 cut(s) 224
GluI GCNGC 4 cut(s) 27, 30, 228, 231
HapII CCGG 1 cut(s) 71
HgaI GACGC 2 cut(s) 68, 203
HindIII AAGCTT 2 cut(s) 87, 249
HpaII CCGG 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 156
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 26, 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 6, 62, 84
Lsp1109I GCAGC 4 cut(s) 16, 38, 217, 239
MaeI CTAG 1 cut(s) 224
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MluCI AATT 3 cut(s) 48, 211, 264
MnlI CCTC 3 cut(s) 125, 127, 186
MseI TTAA 3 cut(s) 39, 47, 280
MspA1I CMGCKG 2 cut(s) 29, 230
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 2 cut(s) 71, 72
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 2 cut(s) 71, 72
NdeI CATATG 1 cut(s) 34
NdeII GATC 1 cut(s) 205
NheI GCTAGC 1 cut(s) 223
PkrI GCNGC 4 cut(s) 28, 31, 229, 232
PshBI ATTAAT 1 cut(s) 47
PstNI CAGNNNCTG 1 cut(s) 233
PvuII CAGCTG 2 cut(s) 29, 230
SaqAI TTAA 3 cut(s) 39, 47, 280
SatI GCNGC 4 cut(s) 27, 30, 228, 231
Sau3AI GATC 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 71, 72
SetI ASST 4 cut(s) 31, 91, 232, 253
SmaI CCCGGG 1 cut(s) 72
Sse9I AATT 3 cut(s) 48, 211, 264
SspMI CTAG 1 cut(s) 224
StyD4I CCNGG 2 cut(s) 69, 70
TasI AATT 3 cut(s) 48, 211, 264
Tru1I TTAA 3 cut(s) 39, 47, 280
Tru9I TTAA 3 cut(s) 39, 47, 280
TseI GCWGC 4 cut(s) 26, 29, 227, 230
TspDTI ATGAA 1 cut(s) 99
TspMI CCCGGG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 1 cut(s) 264
XmaI CCCGGG 1 cut(s) 70
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.