MD03G1083900.v1.1

cucumisin-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
6787507 .. 6787698
192 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1083900.v1.1.491

Sequence Viewer

Length: 192 bp
ATGCCTGAAGTTCTTTCGTTCAAGTCCTTAAATGAGGAGAAGGATTTTGACGTGACCGTTGTTGGAAGGGGCTTGCCAGATCAATCACAAGTATCTGGATCACTGGTTTGGTCTGACGGGGTTCACAGTGTTAGAAGTCCGATTGTTGTATATGCATATATTCAACATAAGCAACAGAACTTGGTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

6.99

Weight (kDa)

5.43

Isoelectric Point (pI)

55.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 2 - 50 8.4e-12 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 106
AcuI CTGAAG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 22, 164
AjiI CACGTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 106
BmgBI CACGTC 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 50
Bsp143I GATC 2 cut(s) 79, 98
BspPI GGATC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 108
BssMI GATC 2 cut(s) 79, 98
Bst4CI ACNGT 2 cut(s) 58, 128
BstC8I GCNNGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 82, 101
BstMBI GATC 2 cut(s) 79, 98
BtrI CACGTC 1 cut(s) 52
BtsIMutI CAGTG 2 cut(s) 101, 133
Cac8I GCNNGC 1 cut(s) 74
CviAII CATG 1 cut(s) 189
CviJI RGCY 1 cut(s) 72
CviKI_1 RGCY 1 cut(s) 72
DpnI GATC 2 cut(s) 81, 100
DpnII GATC 2 cut(s) 79, 98
Eco57I CTGAAG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 1 cut(s) 192
FaiI YATR 6 cut(s) 151, 153, 157, 159, 168, 190
FatI CATG 1 cut(s) 188
Hin1II CATG 1 cut(s) 192
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 115, 141
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 34, 60
HpyCH4III ACNGT 2 cut(s) 58, 128
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 155, 188
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 1 cut(s) 192
Kzo9I GATC 2 cut(s) 79, 98
LpnPI CCDG 4 cut(s) 18, 81, 89, 90
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MalI GATC 2 cut(s) 81, 100
MboI GATC 2 cut(s) 79, 98
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 28
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 29
NdeII GATC 2 cut(s) 79, 98
NlaIII CATG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 157
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 79, 98
SetI ASST 1 cut(s) 54
SgeI CNNG 9 cut(s) 17, 34, 64, 85, 89, 101, 108, 116, 130
TaaI ACNGT 2 cut(s) 58, 128
TaiI ACGT 1 cut(s) 54
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 108, 133
TseFI GTSAC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 52
TspRI CASTG 2 cut(s) 108, 133
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.