Rh1AG054800

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001233
Physical Location & Seq
Reverse (-)
9025404 .. 9027012
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG054800.1

Sequence Viewer

Length: 525 bp
ATGAATATTACAGAAAATTTCCCAGGTGAATTTGCTTTTGGATCTGGACATATCAATCCTTTAAAAGCTATAAACCCGGGGCTTGAGTATGAAGCTTCTAAAAAAGATTACACAAAGTTGCTCTGCATGTTGTTCGATGAGACCAAAGTGAGACTTATATCAGGAGATAACAGCACTTGTTCTGTAGGCTCTGACACAGGATCGCCAAAGGATCACAATTACCCTTCAATGGTAGCTATTGTTGCACCAATGACACCCTTTACGGTTAGAAGTCATAGAAGAGCTAAAAATGTTGACCATGCAAACTCCACTTACCCGGCTAAAATCTGGTCAAATTCTCAAGTCGACATCAAATTGATGACTGAAATTCATGCCTTCAAGTCATTGAATGAGAAGAAGACTTTCGAAGTGACCATTATTGGAAGAGGTATACCAGATGGATCCCATGTATCTGCTTCACTGCTCTGGTCTGATGGTACTCATAGCGTTAGAAGTCCAATTCTTGTACAAAGCACAGCAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

174

Amino Acids

19.04

Weight (kDa)

7.83

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
fn3_6 PF17766 71 - 169 3.5e-19 Fibronectin type-III domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 345, 430
AclWI GGATC 5 cut(s) 49, 208, 219, 435, 448
AcsI RAATTY 4 cut(s) 16, 29, 334, 366
AfaI GTAC 2 cut(s) 478, 507
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 3 cut(s) 228, 379, 388
AjnI CCWGG 1 cut(s) 22
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 4 cut(s) 68, 95, 236, 284
AluI AGCT 4 cut(s) 68, 95, 236, 284
Alw26I GTCTC 2 cut(s) 134, 145
AlwI GGATC 5 cut(s) 49, 208, 219, 435, 448
Ama87I CYCGRG 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 4 cut(s) 16, 29, 334, 366
Asp700I GAANNNNTTC 1 cut(s) 401
AsuC2I CCSGG 3 cut(s) 77, 78, 317
AsuHPI GGTGA 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 76
BamHI GGATCC 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 404
BccI CCATC 2 cut(s) 431, 467
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 1 cut(s) 24
BcnI CCSGG 3 cut(s) 77, 78, 317
BcoDI GTCTC 2 cut(s) 134, 145
BfmI CTRYAG 1 cut(s) 183
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 24, 77, 78, 317
BmeT110I CYCGRG 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 4 cut(s) 24, 77, 78, 317
BpiI GAAGAC 1 cut(s) 404
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 104, 324
BpuMI CCSGG 3 cut(s) 77, 78, 317
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 3 cut(s) 22, 76, 77
Bsc4I CCNNNNNNNGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 24
BseDI CCNNGG 3 cut(s) 22, 76, 77
BseLI CCNNNNNNNGG 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 77, 317
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 134, 145
Bso31I GGTCTC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 4 cut(s) 41, 200, 211, 440
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 5 cut(s) 49, 208, 219, 435, 448
BspQI GCTCTTC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 405
BspTNI GGTCTC 1 cut(s) 134
BsrGI TGTACA 1 cut(s) 505
BssECI CCNNGG 3 cut(s) 22, 76, 77
BssMI GATC 4 cut(s) 41, 200, 211, 440
BssNAI GTATAC 1 cut(s) 431
Bst1107I GTATAC 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 274, 418
BstAUI TGTACA 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 405
BstKTI GATC 4 cut(s) 44, 203, 214, 443
BstMAI GTCTC 2 cut(s) 134, 145
BstMBI GATC 4 cut(s) 41, 200, 211, 440
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNI CCWGG 1 cut(s) 24
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 4 cut(s) 22, 75, 76, 315
BstSFI CTRYAG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 404
BstX2I RGATCY 2 cut(s) 41, 440
BstYI RGATCY 2 cut(s) 41, 440
BstZ17I GTATAC 1 cut(s) 431
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 458
Cfr9I CCCGGG 1 cut(s) 76
Csp6I GTAC 2 cut(s) 477, 506
CviAII CATG 4 cut(s) 127, 299, 371, 446
CviJI RGCY 7 cut(s) 68, 82, 95, 189, 236, 284, 320
CviKI_1 RGCY 7 cut(s) 68, 82, 95, 189, 236, 284, 320
CviQI GTAC 2 cut(s) 477, 506
DpnI GATC 4 cut(s) 43, 202, 213, 442
DpnII GATC 4 cut(s) 41, 200, 211, 440
DraI TTTAAA 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 274, 418
EarI CTCTTC 2 cut(s) 274, 418
Eco31I GGTCTC 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 22
FaeI CATG 4 cut(s) 130, 302, 374, 449
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 4 cut(s) 126, 298, 370, 445
FblI GTMKAC 2 cut(s) 345, 430
Fnu4HI GCNGC 1 cut(s) 519
Fsp4HI GCNGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 519
HapII CCGG 2 cut(s) 77, 317
Hin1II CATG 4 cut(s) 130, 302, 374, 449
HincII GTYRAC 2 cut(s) 295, 346
HindII GTYRAC 2 cut(s) 295, 346
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 2 cut(s) 77, 317
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 3 cut(s) 295, 346, 431
Hpy188I TCNGA 2 cut(s) 193, 472
Hpy188III TCNNGA 2 cut(s) 45, 162
Hpy8I GTNNAC 3 cut(s) 295, 346, 431
HpyAV CCTTC 2 cut(s) 234, 385
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 126, 245, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 4 cut(s) 130, 302, 374, 449
Kzo9I GATC 4 cut(s) 41, 200, 211, 440
LguI GCTCTTC 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 409
MalI GATC 4 cut(s) 43, 202, 213, 442
MboI GATC 4 cut(s) 41, 200, 211, 440
MboII GAAGA 4 cut(s) 291, 406, 409, 435
MflI RGATCY 2 cut(s) 41, 440
MluCI AATT 7 cut(s) 16, 29, 217, 334, 353, 366, 498
MnlI CCTC 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 401
MseI TTAA 1 cut(s) 62
MspI CCGG 2 cut(s) 77, 317
MspR9I CCNGG 4 cut(s) 24, 77, 78, 317
MvaI CCWGG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 242
NciI CCSGG 3 cut(s) 77, 78, 317
NdeII GATC 4 cut(s) 41, 200, 211, 440
NlaIII CATG 4 cut(s) 130, 302, 374, 449
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 130
NspV TTCGAA 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 401
PkrI GCNGC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 22
PspGI CCWGG 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 442
PsuI RGATCY 2 cut(s) 41, 440
RsaI GTAC 2 cut(s) 478, 507
RsaNI GTAC 2 cut(s) 477, 506
SalI GTCGAC 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 4 cut(s) 41, 200, 211, 440
ScrFI CCNGG 4 cut(s) 24, 77, 78, 317
SetI ASST 6 cut(s) 28, 70, 97, 238, 286, 430
SfcI CTRYAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 83, 339
SmoI CTYRAG 2 cut(s) 83, 339
Sse9I AATT 7 cut(s) 16, 29, 217, 334, 353, 366, 498
SspI AATATT 1 cut(s) 7
StyD4I CCNGG 4 cut(s) 22, 75, 76, 315
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 3 cut(s) 135, 345, 405
TasI AATT 7 cut(s) 16, 29, 217, 334, 353, 366, 498
TatI WGTACW 1 cut(s) 505
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 3 cut(s) 17, 105, 359
TspMI CCCGGG 1 cut(s) 76
TspRI CASTG 1 cut(s) 465
XapI RAATTY 4 cut(s) 16, 29, 334, 366
XceI RCATGY 1 cut(s) 130
XmaI CCCGGG 1 cut(s) 76
XmiI GTMKAC 2 cut(s) 345, 430
XmnI GAANNNNTTC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.