Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

58156722 .. 58157145

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCTTATGGATCGATCTGGACATATCAACCCTCTGAAAGCTATAGATCCGGGGTTTGTCTATGAAGATTCTAAAGAAGATTATATAAACTTTCTCTGCATGGTGTTCGATGAGGCTGATGTTAGACTTATTTCTGGACTGAACATGAATTGCCCACAAGCTTTGACAAAGGATTGCCAAAGGATCACAATTATCCTTCATTGGCATCTCCTTCATAGAACAGTTAAAAATGTTGGCCTTTCAAACTCTACATACAAGGCCAAAATCTTGCCAAATTCTGAGGTTGGCATCAAAGTGCTGCCTGAAGTTCTTTCCTTTAATTCACTGAATGAGGAAAAGACTTTCAATGTGACCACTGTCGGGAAAGCTTTGCAAGTTGGATCATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

129

Amino Acids

14.53

Weight (kDa)

6.4

Isoelectric Point (pI)

31.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	71 - 122	3e-11	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	18, 41, 191, 388
AcsI	RAATTY	1 cut(s)	274
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	243, 346
AluBI	AGCT	3 cut(s)	41, 161, 368
AluI	AGCT	3 cut(s)	41, 161, 368
AlwI	GGATC	4 cut(s)	18, 41, 191, 388
AoxI	GGCC	2 cut(s)	235, 258
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BcnI	CCSGG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	214, 297
BoxI	GACNNNNGTC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	285
BshFI	GGCC	2 cut(s)	237, 260
BshVI	ATCGAT	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	360
BsnI	GGCC	2 cut(s)	237, 260
Bsp143I	GATC	5 cut(s)	10, 14, 46, 183, 380
BspANI	GGCC	2 cut(s)	237, 260
BspCNI	CTCAG	1 cut(s)	271
BspDI	ATCGAT	1 cut(s)	13
BspPI	GGATC	4 cut(s)	18, 41, 191, 388
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	5 cut(s)	10, 14, 46, 183, 380
Bst4CI	ACNGT	2 cut(s)	223, 358
BstDEI	CTNAG	1 cut(s)	279
BstKTI	GATC	5 cut(s)	13, 17, 49, 186, 383
BstMBI	GATC	5 cut(s)	10, 14, 46, 183, 380
BstPAI	GACNNNNGTC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	13
BsuRI	GGCC	2 cut(s)	237, 260
BsuTUI	ATCGAT	1 cut(s)	13
BtsIMutI	CAGTG	2 cut(s)	323, 354
ClaI	ATCGAT	1 cut(s)	13
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	2 cut(s)	100, 145
CviJI	RGCY	6 cut(s)	41, 116, 161, 237, 260, 368
CviKI_1	RGCY	6 cut(s)	41, 116, 161, 237, 260, 368
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	12, 16, 48, 185, 382
DpnII	GATC	5 cut(s)	10, 14, 46, 183, 380
Eco57I	CTGAAG	1 cut(s)	324
FaeI	CATG	2 cut(s)	103, 148
FatI	CATG	2 cut(s)	99, 144
Fnu4HI	GCNGC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	299
GluI	GCNGC	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	237, 260
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	2 cut(s)	103, 148
HindIII	AAGCTT	2 cut(s)	159, 366
HinfI	GANTC	1 cut(s)	68
HpaII	CCGG	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	36, 280
Hpy188III	TCNNGA	3 cut(s)	18, 135, 361
HpyAV	CCTTC	2 cut(s)	206, 221
HpyCH4III	ACNGT	2 cut(s)	223, 358
HpyCH4V	TGCA	2 cut(s)	99, 373
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	2 cut(s)	103, 148
Kzo9I	GATC	5 cut(s)	10, 14, 46, 183, 380
LpnPI	CCDG	4 cut(s)	3, 63, 120, 315
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	214, 297
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	12, 16, 48, 185, 382
MboI	GATC	5 cut(s)	10, 14, 46, 183, 380
MboII	GAAGA	2 cut(s)	77, 89
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	148, 189, 274, 319
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	42, 106, 274, 325
MseI	TTAA	3 cut(s)	225, 318, 388
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	5 cut(s)	10, 14, 46, 183, 380
NlaIII	CATG	2 cut(s)	103, 148
NmuCI	GTSAC	1 cut(s)	349
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	300
PshAI	GACNNNNGTC	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	293
SaqAI	TTAA	3 cut(s)	225, 318, 388
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	5 cut(s)	10, 14, 46, 183, 380
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	4 cut(s)	43, 163, 285, 370
SfaNI	GCATC	2 cut(s)	214, 297
SfcI	CTRYAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	4 cut(s)	148, 189, 274, 319
StyD4I	CCNGG	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	223, 358
TaqI	TCGA	2 cut(s)	13, 108
TasI	AATT	4 cut(s)	148, 189, 274, 319
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	225, 318, 388
Tru9I	TTAA	3 cut(s)	225, 318, 388
TscAI	CASTG	2 cut(s)	330, 361
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	4 cut(s)	78, 161, 188, 203
TspRI	CASTG	2 cut(s)	330, 361
XapI	RAATTY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.