Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

5201732 .. 5202559

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGAAGGGAGTGGTCTCTGTCTTTCCGAGCAGAGAATTGCAACTTCAAACAACAAGATCTTGGGACTTTATGGGGCTCAGTGAGAAATTCAATCAAAGTTCCTCTGTTGAGAGTGATGCTGTTGTTGGTATGATCGACAGTGGAATTTGGCCAGAGTCTGAAAGCTTTAAAGATGAAGGTTTTGGTCCTCCTCCGAGAAAATGGAAAGGTGCTTGTGAAGGCGGCAAAAATTTCACTTGCAACAAGTATGCTCCCTCAATATTCATCAAAGATCCCGGGCTTGTGTATGAAGCATCTAAAGAAGATTACATAAAGTTGCTATCCACTAGATATGATGAAAGGACGGTTAGACTTATATCAGGAGATAACAGCAGTTGCCCTACAGGTCCTGAAAAAGGGTCACTGGTGGAACTTAATTACCCTTCGATGGGAGCTAAAGTAGCAGCAATGGAACCTTTTACGGTTAAATTCCATAGACGAGTTAAAAATGTAGGCCTTGCAAACTCAACTTACAATTCCAAAATCTCACCAAATGCCAAAGTAGATGTCAAAGTGGCGCCGGAAGTTCTTTCCTTCAAGTCCCTGAATGAGGAGCAGACCTTTGATGTCACCGTTGTTTGGAGCAGTTTGCAATTCGAATCACGAGTGTCTGCGGCCCTTGTTTGGTCTGATGGCACTCATACCGTTACAAGTCCGATTGTTGTATACACAGTACGTAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

242

Amino Acids

26.69

Weight (kDa)

7.65

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	137 - 235	2.2e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	705
AciI	CCGC	2 cut(s)	222, 653
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	4 cut(s)	86, 144, 229, 467
AcyI	GRCGYC	1 cut(s)	557
AfaI	GTAC	1 cut(s)	714
AfiI	CCNNNNNNNGG	6 cut(s)	395, 427, 428, 589, 618, 663
AgsI	TTSAA	3 cut(s)	47, 91, 577
AluBI	AGCT	2 cut(s)	165, 434
AluI	AGCT	2 cut(s)	165, 434
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	266
AlwNI	CAGNNNCTG	2 cut(s)	158, 389
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	149, 493, 654
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	4 cut(s)	86, 144, 229, 467
ArsI	GACNNNNNNTTYG	2 cut(s)	531, 563
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	3 cut(s)	185, 386, 655
AsuC2I	CCSGG	2 cut(s)	276, 277
AsuHPI	GGTGA	2 cut(s)	519, 601
AsuII	TTCGAA	1 cut(s)	636
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	185, 386
BalI	TGGCCA	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	642
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	421, 665
BcnI	CCSGG	2 cut(s)	276, 277
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	327
BfmI	CTRYAG	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	560
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	3 cut(s)	223, 444, 654
BlsI	GCNGC	3 cut(s)	224, 445, 655
Bme1390I	CCNGG	2 cut(s)	276, 277
Bme18I	GGWCC	2 cut(s)	185, 386
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	185, 386, 655
BmiI	GGNNCC	2 cut(s)	453, 558
BmrFI	CCNGG	2 cut(s)	276, 277
BmsI	GCATC	2 cut(s)	106, 302
Bpu14I	TTCGAA	1 cut(s)	636
BpuMI	CCSGG	2 cut(s)	276, 277
BsaAI	YACGTR	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	6 cut(s)	395, 427, 428, 589, 618, 663
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	275
BseLI	CCNNNNNNNGG	6 cut(s)	395, 427, 428, 589, 618, 663
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	408
BseRI	GAGGAG	2 cut(s)	180, 605
BseXI	GCAGC	1 cut(s)	455
BshFI	GGCC	3 cut(s)	151, 495, 656
BshNI	GGYRCC	1 cut(s)	556
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	2 cut(s)	276, 560
BslFI	GGGAC	2 cut(s)	77, 565
BslI	CCNNNNNNNGG	6 cut(s)	395, 427, 428, 589, 618, 663
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	77, 565
BsnI	GGCC	3 cut(s)	151, 495, 656
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	3 cut(s)	56, 132, 271
BspACI	CCGC	2 cut(s)	222, 653
BspANI	GGCC	3 cut(s)	151, 495, 656
BspCNI	CTCAG	1 cut(s)	90
BspLI	GGNNCC	2 cut(s)	453, 558
BspPI	GGATC	1 cut(s)	266
BspT104I	TTCGAA	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	3 cut(s)	56, 132, 271
BssNAI	GTATAC	1 cut(s)	706
BssNI	GRCGYC	1 cut(s)	557
BssSI	CACGAG	1 cut(s)	642
Bst1107I	GTATAC	1 cut(s)	706
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	6 cut(s)	140, 346, 463, 613, 685, 712
BstACI	GRCGYC	1 cut(s)	557
BstBAI	YACGTR	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	636
BstDEI	CTNAG	1 cut(s)	77
BstENI	CCTNNNNNAGG	2 cut(s)	393, 587
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	3 cut(s)	59, 135, 274
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	3 cut(s)	56, 132, 271
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	274, 275
BstSFI	CTRYAG	1 cut(s)	381
BstSNI	TACGTA	1 cut(s)	716
BstV1I	GCAGC	1 cut(s)	455
BstX2I	RGATCY	2 cut(s)	56, 271
BstYI	RGATCY	2 cut(s)	56, 271
BstZ17I	GTATAC	1 cut(s)	706
BsuRI	GGCC	3 cut(s)	151, 495, 656
BtsIMutI	CAGTG	3 cut(s)	85, 145, 401
CaiI	CAGNNNCTG	2 cut(s)	158, 389
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	3 cut(s)	185, 386, 655
Cfr9I	CCCGGG	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	713
CviAII	CATG	1 cut(s)	723
CviJI	RGCY	7 cut(s)	76, 151, 165, 280, 434, 495, 656
CviKI_1	RGCY	7 cut(s)	76, 151, 165, 280, 434, 495, 656
CviQI	GTAC	1 cut(s)	713
DdeI	CTNAG	1 cut(s)	77
DinI	GGCGCC	1 cut(s)	558
DpnI	GATC	3 cut(s)	58, 134, 273
DpnII	GATC	3 cut(s)	56, 132, 271
DraI	TTTAAA	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	149
Eco105I	TACGTA	1 cut(s)	716
Eco147I	AGGCCT	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	185, 386
Eco88I	CYCGRG	1 cut(s)	275
EcoNI	CCTNNNNNAGG	2 cut(s)	393, 587
EcoO109I	RGGNCCY	1 cut(s)	386
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
FaeI	CATG	1 cut(s)	726
FaqI	GGGAC	2 cut(s)	77, 565
FatI	CATG	1 cut(s)	722
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	3 cut(s)	223, 444, 654
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	223, 444, 654
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	3 cut(s)	223, 444, 654
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	3 cut(s)	151, 495, 656
HapII	CCGG	2 cut(s)	276, 560
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	726
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	2 cut(s)	155, 638
HpaII	CCGG	2 cut(s)	276, 560
HphI	GGTGA	2 cut(s)	519, 601
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	5 cut(s)	27, 160, 195, 670, 696
Hpy188III	TCNNGA	3 cut(s)	360, 389, 642
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	4 cut(s)	170, 212, 432, 583
HpyCH4III	ACNGT	6 cut(s)	140, 346, 463, 613, 685, 712
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	4 cut(s)	40, 240, 500, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	726
HspAI	GCGC	1 cut(s)	557
KasI	GGCGCC	1 cut(s)	556
Kzo9I	GATC	3 cut(s)	56, 132, 271
LmnI	GCTCC	4 cut(s)	256, 431, 592, 621
LpnPI	CCDG	8 cut(s)	165, 289, 345, 369, 389, 402, 573, 596
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	106, 302
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	3 cut(s)	399, 607, 685
MalI	GATC	3 cut(s)	58, 134, 273
MboI	GATC	3 cut(s)	56, 132, 271
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	2 cut(s)	56, 271
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	8 cut(s)	35, 86, 144, 229, 415, 467, 514, 632
MluNI	TGGCCA	1 cut(s)	151
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	1 cut(s)	164
MnlI	CCTC	5 cut(s)	112, 198, 201, 265, 583
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	4 cut(s)	168, 414, 465, 483
Msp20I	TGGCCA	1 cut(s)	151
MspI	CCGG	2 cut(s)	276, 560
MspR9I	CCNGG	2 cut(s)	276, 277
MwoI	GCNNNNNNNGC	1 cut(s)	440
NarI	GGCGCC	1 cut(s)	557
NciI	CCSGG	2 cut(s)	276, 277
NdeII	GATC	3 cut(s)	56, 132, 271
NlaIII	CATG	1 cut(s)	726
NlaIV	GGNNCC	2 cut(s)	453, 558
NmuCI	GTSAC	2 cut(s)	399, 607
NspV	TTCGAA	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	224, 445, 655
PleI	GAGTC	1 cut(s)	163
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	163
Ppu21I	YACGTR	1 cut(s)	716
PpuMI	RGGWCCY	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	386
PspN4I	GGNNCC	2 cut(s)	453, 558
PspPI	GGNCC	3 cut(s)	185, 386, 655
PspPPI	RGGWCCY	1 cut(s)	386
PstNI	CAGNNNCTG	2 cut(s)	158, 389
PsuI	RGATCY	2 cut(s)	56, 271
RsaI	GTAC	1 cut(s)	714
RsaNI	GTAC	1 cut(s)	713
SaqAI	TTAA	4 cut(s)	168, 414, 465, 483
SatI	GCNGC	3 cut(s)	223, 444, 654
Sau3AI	GATC	3 cut(s)	56, 132, 271
Sau96I	GGNCC	3 cut(s)	185, 386, 655
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	276, 277
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	167, 181, 211, 388, 436, 457, 602, 718
SfaNI	GCATC	2 cut(s)	106, 302
SfcI	CTRYAG	1 cut(s)	381
SfoI	GGCGCC	1 cut(s)	558
SfuI	TTCGAA	1 cut(s)	636
SinI	GGWCC	2 cut(s)	185, 386
SmaI	CCCGGG	1 cut(s)	277
SnaBI	TACGTA	1 cut(s)	716
Sse9I	AATT	8 cut(s)	35, 86, 144, 229, 415, 467, 514, 632
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	222, 653
SspDI	GGCGCC	1 cut(s)	556
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	274, 275
TaaI	ACNGT	6 cut(s)	140, 346, 463, 613, 685, 712
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	3 cut(s)	135, 425, 636
TasI	AATT	8 cut(s)	35, 86, 144, 229, 415, 467, 514, 632
TauI	GCSGC	2 cut(s)	225, 656
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	4 cut(s)	168, 414, 465, 483
Tru9I	TTAA	4 cut(s)	168, 414, 465, 483
TscAI	CASTG	3 cut(s)	85, 145, 408
TseFI	GTSAC	2 cut(s)	399, 607
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	399, 607
TspDTI	ATGAA	5 cut(s)	17, 189, 253, 303, 351
TspMI	CCCGGG	1 cut(s)	275
TspRI	CASTG	3 cut(s)	85, 145, 408
VpaK11BI	GGWCC	2 cut(s)	185, 386
XagI	CCTNNNNNAGG	2 cut(s)	393, 587
XapI	RAATTY	4 cut(s)	86, 144, 229, 467
XmaI	CCCGGG	1 cut(s)	275
XmiI	GTMKAC	1 cut(s)	705
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.