Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

74599271 .. 74599819

Gene Structure 549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG471000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCTGCAGCTTGGCCAATGAATAATACCAACAATGCACCCGCTGAGTTTGCTTATGGATCTGGACATGTCAATCCTGTAAAAGCTATAGATCCCGGGCTTGTTTATGAAACTTCTAAAGAAGATTTCATAAACCTACTTTGCATGGACTATGATGAAGCCAAAGTGAGACTGATATCAGGAGATAGCAGCACTTGCCCTACAGGCTCTGATAAAGGATCACCAAAGGATCTTAACTACCCTTCAATGGCTGCAGCAAACATTACACCAAAGAAACCTTTTACGATTAACTTTCATAGAACAGTTAAAAATGTTGGCCTTGCAAACTCTACTTACAATGCCACCATCTTCCAAAGTTCCAAAGACGTGGATATCAAAGTTGTGCCTCAATTTCTATCCTTCAAGTCCTTGAATGAGGAGAAGAGCTTTGATGTGGCTGTTGTTGGAAAAGGTTTGATAGGTGGATCACTAATTTCTTCGTCACTGGTTTGGTCTGATGGTGTTCATAACGTTAGGAGTCCAGTTGTGGTGCGTACTGAAATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

182

Amino Acids

19.6

Weight (kDa)

6.28

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	77 - 177	2.8e-24	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	5 cut(s)	67, 86, 226, 237, 472
AcoI	YGGCCR	1 cut(s)	14
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	246, 403, 412
AjiI	CACGTC	1 cut(s)	367
AluBI	AGCT	3 cut(s)	11, 86, 426
AluI	AGCT	3 cut(s)	11, 86, 426
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	5 cut(s)	67, 86, 226, 237, 472
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	2 cut(s)	14, 316
ApeKI	GCWGC	4 cut(s)	8, 189, 251, 254
AsuC2I	CCSGG	2 cut(s)	96, 97
AsuHPI	GGTGA	1 cut(s)	213
AvaI	CYCGRG	1 cut(s)	95
BalI	TGGCCA	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	20, 201, 238, 266
BccI	CCATC	2 cut(s)	353, 491
BcnI	CCSGG	2 cut(s)	96, 97
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	4 cut(s)	6, 87, 201, 252
BglI	GCCNNNNNGGC	1 cut(s)	204
BisI	GCNGC	4 cut(s)	9, 190, 252, 255
BlsI	GCNGC	4 cut(s)	10, 191, 253, 256
Bme1390I	CCNGG	2 cut(s)	96, 97
BmeT110I	CYCGRG	1 cut(s)	95
BmgBI	CACGTC	1 cut(s)	367
BmrFI	CCNGG	2 cut(s)	96, 97
BpuMI	CCSGG	2 cut(s)	96, 97
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	489, 521
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	489, 521
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	4 cut(s)	20, 201, 238, 266
BshFI	GGCC	2 cut(s)	16, 318
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	1 cut(s)	247
BsmAI	GTCTC	1 cut(s)	163
BsnI	GGCC	2 cut(s)	16, 318
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	5 cut(s)	59, 91, 218, 229, 464
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	2 cut(s)	16, 318
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	2 cut(s)	10, 256
BspPI	GGATC	5 cut(s)	67, 86, 226, 237, 472
BspQI	GCTCTTC	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	489, 521
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	5 cut(s)	59, 91, 218, 229, 464
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	45
BstKTI	GATC	5 cut(s)	62, 94, 221, 232, 467
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	5 cut(s)	59, 91, 218, 229, 464
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 195, 204
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	94, 95
BstSFI	CTRYAG	4 cut(s)	6, 87, 201, 252
BstV1I	GCAGC	4 cut(s)	20, 201, 238, 266
BstX2I	RGATCY	3 cut(s)	59, 91, 229
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	3 cut(s)	59, 91, 229
BsuRI	GGCC	2 cut(s)	16, 318
BtrI	CACGTC	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	482
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	209
Cfr9I	CCCGGG	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	2 cut(s)	68, 145
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	5 cut(s)	61, 93, 220, 231, 466
DpnII	GATC	5 cut(s)	59, 91, 218, 229, 464
EaeI	YGGCCR	1 cut(s)	14
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco32I	GATATC	2 cut(s)	177, 373
Eco88I	CYCGRG	1 cut(s)	95
EcoRV	GATATC	2 cut(s)	177, 373
FaeI	CATG	2 cut(s)	71, 148
FaiI	YATR	9 cut(s)	57, 69, 89, 108, 131, 146, 153, 297, 507
FatI	CATG	2 cut(s)	67, 144
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	4 cut(s)	9, 190, 252, 255
Fsp4HI	GCNGC	4 cut(s)	9, 190, 252, 255
GluI	GCNGC	4 cut(s)	9, 190, 252, 255
HaeIII	GGCC	2 cut(s)	16, 318
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	2 cut(s)	71, 148
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	211, 496
Hpy188III	TCNNGA	2 cut(s)	63, 180
HpyAV	CCTTC	2 cut(s)	252, 409
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	366, 510
HpyCH4V	TGCA	5 cut(s)	8, 38, 144, 254, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 195, 204
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	366, 510
Hsp92II	CATG	2 cut(s)	71, 148
Kzo9I	GATC	5 cut(s)	59, 91, 218, 229, 464
LguI	GCTCTTC	1 cut(s)	416
LpnPI	CCDG	8 cut(s)	18, 48, 90, 109, 165, 189, 470, 534
Lsp1109I	GCAGC	4 cut(s)	20, 201, 238, 266
MaeII	ACGT	2 cut(s)	366, 510
MaeIII	GTNAC	1 cut(s)	480
MalI	GATC	5 cut(s)	61, 93, 220, 231, 466
MboI	GATC	5 cut(s)	59, 91, 218, 229, 464
MboII	GAAGA	4 cut(s)	134, 340, 433, 468
MflI	RGATCY	3 cut(s)	59, 91, 229
MlsI	TGGCCA	1 cut(s)	16
MluCI	AATT	2 cut(s)	389, 471
MluNI	TGGCCA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	424
MnlI	CCTC	2 cut(s)	396, 409
Mox20I	TGGCCA	1 cut(s)	16
MscI	TGGCCA	1 cut(s)	16
MseI	TTAA	3 cut(s)	234, 288, 306
Msp20I	TGGCCA	1 cut(s)	16
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	96, 97
MwoI	GCNNNNNNNGC	3 cut(s)	50, 195, 204
NciI	CCSGG	2 cut(s)	96, 97
NdeII	GATC	5 cut(s)	59, 91, 218, 229, 464
NlaIII	CATG	2 cut(s)	71, 148
NmuCI	GTSAC	1 cut(s)	480
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	10, 191, 253, 256
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PscI	ACATGT	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	510
PstI	CTGCAG	2 cut(s)	10, 256
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	59, 91, 229
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	234, 288, 306
SatI	GCNGC	4 cut(s)	9, 190, 252, 255
Sau3AI	GATC	5 cut(s)	59, 91, 218, 229, 464
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	2 cut(s)	96, 97
SetI	ASST	9 cut(s)	13, 88, 138, 280, 369, 428, 454, 463, 513
SfcI	CTRYAG	4 cut(s)	6, 87, 201, 252
SmaI	CCCGGG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	389, 471
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	94, 95
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	369, 513
TasI	AATT	2 cut(s)	389, 471
Tru1I	TTAA	3 cut(s)	234, 288, 306
Tru9I	TTAA	3 cut(s)	234, 288, 306
TscAI	CASTG	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	480
TseI	GCWGC	4 cut(s)	8, 189, 251, 254
Tsp45I	GTSAC	1 cut(s)	480
TspDTI	ATGAA	6 cut(s)	35, 118, 123, 171, 284, 494
TspMI	CCCGGG	1 cut(s)	95
TspRI	CASTG	1 cut(s)	489
XceI	RCATGY	1 cut(s)	71
XmaI	CCCGGG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.