Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000507.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

76633 .. 77004

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000507.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atggttgcttccgtctcatcacgtgggccaaataaatttttacctgaaattataaagccagatataagtgccccgggggttgatattttggcagcatattcacctgttgcccctatcacaaagagtgctgaagacaagcggcgtgtgagatgtacactactatctagaacctccaaggcttgtcctcatgctgcaggtgcagctgcatatgttaaagagatgcaccctgattggtctccaactgccattaaatcatctcttatgactacaacttggcctatgaatgatactagcaacttccccggtgaatatgcttatggatcatggacatatcaaccctctgaaagctatagatccggggcttgtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

123

Amino Acids

13.31

Weight (kDa)

8.82

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AarI	CACCTGC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	185
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	328, 348
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	150
AcvI	CACGTG	1 cut(s)	23
AfaI	GTAC	1 cut(s)	154
AluBI	AGCT	2 cut(s)	203, 348
AluI	AGCT	2 cut(s)	203, 348
Alw26I	GTCTC	2 cut(s)	19, 240
AlwI	GGATC	2 cut(s)	328, 348
Ama87I	CYCGRG	1 cut(s)	73
AoxI	GGCC	2 cut(s)	26, 275
ApeKI	GCWGC	4 cut(s)	92, 191, 200, 203
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	4 cut(s)	74, 75, 303, 358
AsuHPI	GGTGA	2 cut(s)	93, 317
AvaI	CYCGRG	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	73
BbrPI	CACGTG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	104, 178, 190, 212
BcnI	CCSGG	4 cut(s)	74, 75, 303, 358
BcoDI	GTCTC	2 cut(s)	19, 240
BfaI	CTAG	2 cut(s)	165, 291
BfmI	CTRYAG	2 cut(s)	192, 349
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	5 cut(s)	93, 140, 192, 201, 204
BlsI	GCNGC	5 cut(s)	94, 141, 193, 202, 205
Bme1390I	CCNGG	4 cut(s)	74, 75, 303, 358
BmeT110I	CYCGRG	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	26
BmrFI	CCNGG	4 cut(s)	74, 75, 303, 358
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	138
BpuMI	CCSGG	4 cut(s)	74, 75, 303, 358
BsaAI	YACGTR	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	6 cut(s)	72, 73, 74, 174, 301, 357
BseDI	CCNNGG	6 cut(s)	72, 73, 74, 174, 301, 357
BseSI	GKGCMC	1 cut(s)	73
BseXI	GCAGC	4 cut(s)	104, 178, 190, 212
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	2 cut(s)	28, 277
BsiHKCI	CYCGRG	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	74, 303, 357
BsmAI	GTCTC	2 cut(s)	19, 240
BsmBI	CGTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	28, 277
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	320, 353
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	2 cut(s)	28, 277
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	328, 348
BspTNI	GGTCTC	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	152
BssECI	CCNNGG	6 cut(s)	72, 73, 74, 174, 301, 357
BssMI	GATC	2 cut(s)	320, 353
BssT1I	CCWWGG	1 cut(s)	174
BstAUI	TGTACA	1 cut(s)	152
BstBAI	YACGTR	1 cut(s)	23
BstKTI	GATC	2 cut(s)	323, 356
BstMAI	GTCTC	2 cut(s)	19, 240
BstMBI	GATC	2 cut(s)	320, 353
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 200
BstSCI	CCNGG	4 cut(s)	72, 73, 301, 356
BstSFI	CTRYAG	2 cut(s)	192, 349
BstSLI	GKGCMC	1 cut(s)	73
BstV1I	GCAGC	4 cut(s)	104, 178, 190, 212
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	2 cut(s)	28, 277
BveI	ACCTGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	26
Cfr9I	CCCGGG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	2 cut(s)	188, 324
CviJI	RGCY	7 cut(s)	28, 58, 179, 203, 277, 348, 362
CviKI_1	RGCY	7 cut(s)	28, 58, 179, 203, 277, 348, 362
CviQI	GTAC	1 cut(s)	153
DpnI	GATC	2 cut(s)	322, 355
DpnII	GATC	2 cut(s)	320, 353
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	150
Eco72I	CACGTG	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	2 cut(s)	191, 327
FatI	CATG	2 cut(s)	187, 323
FauNDI	CATATG	1 cut(s)	208
Fnu4HI	GCNGC	5 cut(s)	93, 140, 192, 201, 204
Fsp4HI	GCNGC	5 cut(s)	93, 140, 192, 201, 204
FspBI	CTAG	2 cut(s)	165, 291
GluI	GCNGC	5 cut(s)	93, 140, 192, 201, 204
HaeIII	GGCC	2 cut(s)	28, 277
HapII	CCGG	3 cut(s)	74, 303, 357
Hin1II	CATG	2 cut(s)	191, 327
HpaII	CCGG	3 cut(s)	74, 303, 357
HphI	GGTGA	2 cut(s)	93, 317
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	1 cut(s)	165
Hpy8I	GTNNAC	1 cut(s)	155
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	194, 200, 206, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 200
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	191, 327
Kzo9I	GATC	2 cut(s)	320, 353
LpnPI	CCDG	7 cut(s)	57, 72, 87, 117, 180, 240, 316
Lsp1109I	GCAGC	4 cut(s)	104, 178, 190, 212
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	165, 291
MaeII	ACGT	1 cut(s)	22
MalI	GATC	2 cut(s)	322, 355
MboI	GATC	2 cut(s)	320, 353
MboII	GAAGA	1 cut(s)	143
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	35, 48
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	181, 195, 349
MseI	TTAA	2 cut(s)	213, 249
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	3 cut(s)	74, 303, 357
MspR9I	CCNGG	4 cut(s)	74, 75, 303, 358
MwoI	GCNNNNNNNGC	2 cut(s)	197, 200
NciI	CCSGG	4 cut(s)	74, 75, 303, 358
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	320, 353
NlaIII	CATG	2 cut(s)	191, 327
PaqCI	CACCTGC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	94, 141, 193, 202, 205
PmaCI	CACGTG	1 cut(s)	23
PmlI	CACGTG	1 cut(s)	23
Ppu21I	YACGTR	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	213, 249
SatI	GCNGC	5 cut(s)	93, 140, 192, 201, 204
Sau3AI	GATC	2 cut(s)	320, 353
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	4 cut(s)	74, 75, 303, 358
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	7 cut(s)	25, 46, 106, 173, 199, 205, 350
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	192, 349
SmaI	CCCGGG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	35, 48
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	2 cut(s)	165, 291
StyD4I	CCNGG	4 cut(s)	72, 73, 301, 356
StyI	CCWWGG	1 cut(s)	174
TaiI	ACGT	1 cut(s)	25
TasI	AATT	2 cut(s)	35, 48
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	213, 249
Tru9I	TTAA	2 cut(s)	213, 249
TseI	GCWGC	4 cut(s)	92, 191, 200, 203
TspDTI	ATGAA	1 cut(s)	296
TspMI	CCCGGG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	35
XbaI	TCTAGA	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	73
XspI	CTAG	2 cut(s)	165, 291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.