Rh1AG055100

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001233
Physical Location & Seq
Reverse (-)
9029382 .. 9029705
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG055100.1

Sequence Viewer

Length: 324 bp
ATGAATTTTACCTACAATGATTATAATGCCGCTGCTGAATTTGCTTGTGGATCTGGACATATCAATCCTGTCAAAGCTATAGAGCCGGGGCTTGTATATGAAGCTTCTAAGGAAGACTGCATAAAGTTGCTCTTCTTGGTCTTAAACCAGACCAGTGTTAGACTTATATCAGGAGATAACAGCACTTGCTCTACAGGCTCTGACAAAGGATCTTTACATGATCAAAATTACCCATCGCTGGCAGCTGCTGTCACACCAAAGAAACCTTTTTCATTCAAATTTCACAGAAAAGTTCAGAATGTTGGCCTTGCAAACTCCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

107

Amino Acids

11.57

Weight (kDa)

7.73

Isoelectric Point (pI)

19.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AciI CCGC 1 cut(s) 30
AclWI GGATC 2 cut(s) 58, 217
AcsI RAATTY 3 cut(s) 4, 38, 278
AfiI CCNNNNNNNGG 1 cut(s) 238
AgsI TTSAA 1 cut(s) 277
AluBI AGCT 3 cut(s) 77, 104, 245
AluI AGCT 3 cut(s) 77, 104, 245
AlwI GGATC 2 cut(s) 58, 217
AlwNI CAGNNNCTG 2 cut(s) 200, 248
AoxI GGCC 1 cut(s) 304
ApeKI GCWGC 3 cut(s) 32, 242, 245
ApoI RAATTY 3 cut(s) 4, 38, 278
AsuC2I CCSGG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 3 cut(s) 19, 232, 254
BccI CCATC 1 cut(s) 241
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 322
BfmI CTRYAG 2 cut(s) 78, 192
BisI GCNGC 4 cut(s) 30, 33, 243, 246
BlsI GCNGC 4 cut(s) 31, 34, 244, 247
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 86
Bsc4I CCNNNNNNNGG 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 238
BseNI ACTGG 1 cut(s) 153
BseXI GCAGC 3 cut(s) 19, 232, 254
BshFI GGCC 1 cut(s) 306
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 238
BsnI GGCC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 50, 209, 220
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 306
BspPI GGATC 2 cut(s) 58, 217
BspQI GCTCTTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 3 cut(s) 50, 209, 220
Bst6I CTCTTC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 3 cut(s) 53, 212, 223
BstMBI GATC 3 cut(s) 50, 209, 220
BstMWI GCNNNNNNNGC 2 cut(s) 41, 195
BstSCI CCNGG 1 cut(s) 85
BstSFI CTRYAG 2 cut(s) 78, 192
BstV1I GCAGC 3 cut(s) 19, 232, 254
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 50, 209
BstYI RGATCY 2 cut(s) 50, 209
BsuRI GGCC 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 240
CaiI CAGNNNCTG 2 cut(s) 200, 248
CviAII CATG 1 cut(s) 218
CviJI RGCY 7 cut(s) 77, 85, 91, 104, 198, 245, 306
CviKI_1 RGCY 7 cut(s) 77, 85, 91, 104, 198, 245, 306
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 52, 211, 222
DpnII GATC 3 cut(s) 50, 209, 220
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
FaeI CATG 1 cut(s) 221
FaiI YATR 8 cut(s) 24, 60, 80, 97, 99, 122, 167, 219
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FatI CATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 30, 33, 243, 246
Fsp4HI GCNGC 4 cut(s) 30, 33, 243, 246
FspBI CTAG 1 cut(s) 322
GluI GCNGC 4 cut(s) 30, 33, 243, 246
HaeIII GGCC 1 cut(s) 306
HapII CCGG 1 cut(s) 86
Hin1II CATG 1 cut(s) 221
HindIII AAGCTT 1 cut(s) 102
HpaII CCGG 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 202, 297
Hpy188III TCNNGA 2 cut(s) 54, 171
HpyCH4V TGCA 2 cut(s) 120, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 195
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 50, 209, 220
LguI GCTCTTC 1 cut(s) 137
LpnPI CCDG 8 cut(s) 39, 81, 99, 156, 161, 166, 180, 224
Lsp1109I GCAGC 3 cut(s) 19, 232, 254
MaeI CTAG 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 250
MalI GATC 3 cut(s) 52, 211, 222
MboI GATC 3 cut(s) 50, 209, 220
MboII GAAGA 2 cut(s) 124, 125
MflI RGATCY 2 cut(s) 50, 209
MluCI AATT 4 cut(s) 4, 38, 226, 278
MseI TTAA 1 cut(s) 143
MspA1I CMGCKG 2 cut(s) 32, 245
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 41, 195
NciI CCSGG 1 cut(s) 87
NdeII GATC 3 cut(s) 50, 209, 220
NlaIII CATG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 31, 34, 244, 247
PsiI TTATAA 1 cut(s) 24
PstNI CAGNNNCTG 2 cut(s) 200, 248
PsuI RGATCY 2 cut(s) 50, 209
PvuII CAGCTG 1 cut(s) 245
SapI GCTCTTC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 143
SatI GCNGC 4 cut(s) 30, 33, 243, 246
Sau3AI GATC 3 cut(s) 50, 209, 220
ScrFI CCNGG 1 cut(s) 87
SetI ASST 6 cut(s) 14, 79, 106, 247, 268, 323
SfcI CTRYAG 2 cut(s) 78, 192
Sse9I AATT 4 cut(s) 4, 38, 226, 278
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 85
TasI AATT 4 cut(s) 4, 38, 226, 278
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 143
Tru9I TTAA 1 cut(s) 143
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 250
TseI GCWGC 3 cut(s) 32, 242, 245
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 3 cut(s) 17, 114, 261
TspRI CASTG 1 cut(s) 160
XapI RAATTY 3 cut(s) 4, 38, 278
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.