Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016895.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 352

Gene Structure 352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 352 bp

tggatctggacatatcattcctgtccaagctataaacccagggctggtttatgaagcttctaaggatgattacataaaactcctctgctcggtattgggagagggcgatgttagacttatatcaggagataacagcacttgccctccacactcggacaaagacgcgccaaaggatcacaattacccttcgctagcagctgttgttccaccaaataaagcttttactgtgaaatttcacagagtagttaaaaatgttggccttacaaactccactacagtgccaaaatcctcggaaacaacacttaagtggacatcaaagtggtgcctaaggttctttccttcgagtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

116

Amino Acids

12.59

Weight (kDa)

8.83

Isoelectric Point (pI)

38.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccII	CGCG	1 cut(s)	165
AclWI	GGATC	2 cut(s)	11, 181
AcsI	RAATTY	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	44, 89
AflII	CTTAAG	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	38
AleI	CACNNNNGTG	2 cut(s)	276, 305
AluBI	AGCT	4 cut(s)	30, 57, 198, 219
AluI	AGCT	4 cut(s)	30, 57, 198, 219
AlwI	GGATC	2 cut(s)	11, 181
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	167
AsuNHI	GCTAGC	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	207
BciT130I	CCWGG	1 cut(s)	40
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	274
BfrI	CTTAAG	1 cut(s)	303
BisI	GCNGC	1 cut(s)	196
BlsI	GCNGC	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	40
BmtI	GCTAGC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	38, 39, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 89
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	3 cut(s)	38, 39, 289
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	44, 89
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	207
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	44, 89
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	3, 173
BspANI	GGCC	1 cut(s)	259
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	324
BspOI	GCTAGC	1 cut(s)	195
BspPI	GGATC	2 cut(s)	11, 181
BspT107I	GGYRCC	1 cut(s)	322
BspTI	CTTAAG	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	38, 39, 289
BssMI	GATC	2 cut(s)	3, 173
Bst2UI	CCWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	227, 278
BstAFI	CTTAAG	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	61, 327
BstF5I	GGATG	1 cut(s)	71
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	2 cut(s)	6, 176
BstMBI	GATC	2 cut(s)	3, 173
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstSFI	CTRYAG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	3
BstYI	RGATCY	1 cut(s)	3
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	283
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	167
CseI	GACGC	1 cut(s)	171
CviJI	RGCY	6 cut(s)	30, 44, 57, 198, 219, 259
CviKI_1	RGCY	6 cut(s)	30, 44, 57, 198, 219, 259
DdeI	CTNAG	2 cut(s)	61, 327
DpnI	GATC	2 cut(s)	5, 175
DpnII	GATC	2 cut(s)	3, 173
Eco81I	CCTNAGG	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	38
FaiI	YATR	5 cut(s)	13, 33, 52, 75, 120
Fnu4HI	GCNGC	1 cut(s)	196
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	196
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	259
HgaI	GACGC	1 cut(s)	171
HhaI	GCGC	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HindIII	AAGCTT	2 cut(s)	55, 217
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188I	TCNGA	2 cut(s)	155, 293
Hpy188III	TCNNGA	2 cut(s)	7, 124
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	196, 349
HpyCH4III	ACNGT	2 cut(s)	227, 278
HpyF3I	CTNAG	2 cut(s)	61, 327
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	3, 173
LpnPI	CCDG	5 cut(s)	25, 30, 34, 52, 109
Lsp1109I	GCAGC	1 cut(s)	207
MaeI	CTAG	1 cut(s)	192
MalI	GATC	2 cut(s)	5, 175
MboI	GATC	2 cut(s)	3, 173
MflI	RGATCY	1 cut(s)	3
MluCI	AATT	2 cut(s)	179, 231
MnlI	CCTC	4 cut(s)	93, 95, 154, 299
MseI	TTAA	2 cut(s)	247, 304
MslI	CAYNNNNRTG	3 cut(s)	276, 305, 317
MspA1I	CMGCKG	1 cut(s)	198
MspCI	CTTAAG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	1 cut(s)	165
NdeII	GATC	2 cut(s)	3, 173
NheI	GCTAGC	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	324
OliI	CACNNNNGTG	2 cut(s)	276, 305
PasI	CCCWGGG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	3
PvuII	CAGCTG	1 cut(s)	198
RseI	CAYNNNNRTG	3 cut(s)	276, 305, 317
SaqAI	TTAA	2 cut(s)	247, 304
SatI	GCNGC	1 cut(s)	196
Sau3AI	GATC	2 cut(s)	3, 173
ScrFI	CCNGG	1 cut(s)	40
SetI	ASST	5 cut(s)	32, 59, 200, 221, 333
SfcI	CTRYAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	3 cut(s)	276, 305, 317
SmlI	CTYRAG	1 cut(s)	303
SmoI	CTYRAG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	179, 231
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	38
TaaI	ACNGT	2 cut(s)	227, 278
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	179, 231
Tru1I	TTAA	2 cut(s)	247, 304
Tru9I	TTAA	2 cut(s)	247, 304
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	1 cut(s)	195
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	283
Vha464I	CTTAAG	1 cut(s)	303
XapI	RAATTY	1 cut(s)	231
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.