Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

5916569 .. 5917676

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g07730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGATTTATGGGGCAGAAATACTGGATTTAAGCAATGTTAGTCGGAGCTTTGAAGTTTTCGTTAGTCAATATGATGTTTCTCAGCCGGATATTAGTGCCCCAGGGGCCGAATTTGGCTGCATATTCACGGATTCACCTATTGCTTCGATCACACAATTGGAAGAAGGCAAGAAGCGTGTAAAATACAATATGTTATCTGGAACCTCCGTATCTTATCCTCGTGCTGCTGCTGCAGGGCTTGTGTATGAAGCTTCTGAAGAAGATTACATAAGGTTGCTATGCACAATGTATGATGAAGGCAACGTTAGACGCAAATCAGAAGATAACAGCGCTTGCCCTGAAGGATCTGAGAAAAGATATGCAAAGGATCATAATTACCCTTCAATGGGAGATAAAGTTGCAGAAAAGGAACCTTTTACAGTAAAATTTCATAGAAGAGTTAAAAATGTTGGCCTCCCAAACTCTACCTACAAGGCCAAAATCTCTTTGAACTCCAAAGTTGACATCAAAGTGGTTCTTGAAGTTCGTTCGTTCGAGTTGAACGAGGAGAAGACTTTTGATGTGATCGTCGTAGGAAGAGATTTACCAAAAGGATTACAAGTGTCTGGATCGCTGGTTTGGTCTGATGGTGTTCACAACTTTAGAAGTCCGGTTGTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

221

Amino Acids

24.49

Weight (kDa)

5.74

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	3 cut(s)	352, 375, 616
AcsI	RAATTY	2 cut(s)	110, 425
AcuI	CTGAAG	2 cut(s)	276, 360
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	385, 386
AgsI	TTSAA	5 cut(s)	53, 384, 490, 521, 541
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	48, 251
AluI	AGCT	2 cut(s)	48, 251
AlwI	GGATC	3 cut(s)	352, 375, 616
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	3 cut(s)	105, 451, 474
ApeKI	GCWGC	4 cut(s)	117, 224, 227, 230
ApoI	RAATTY	2 cut(s)	110, 425
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	100
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	4 cut(s)	104, 211, 214, 217
BccI	CCATC	1 cut(s)	620
BciT130I	CCWGG	1 cut(s)	102
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	333
BglI	GCCNNNNNGGC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	118, 225, 228, 231
BlsI	GCNGC	4 cut(s)	119, 226, 229, 232
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	3 cut(s)	106, 202, 411
BmrFI	CCNGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	100, 101
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 386
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	100, 101
BseLI	CCNNNNNNNGG	2 cut(s)	385, 386
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	2 cut(s)	95, 339
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	4 cut(s)	104, 211, 214, 217
BshFI	GGCC	3 cut(s)	107, 453, 476
BsiSI	CCGG	2 cut(s)	86, 650
BslI	CCNNNNNNNGG	2 cut(s)	385, 386
BsnI	GGCC	3 cut(s)	107, 453, 476
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	5 cut(s)	147, 344, 367, 564, 608
BspANI	GGCC	3 cut(s)	107, 453, 476
BspCNI	CTCAG	2 cut(s)	94, 340
BspLI	GGNNCC	3 cut(s)	106, 202, 411
BspMAI	CTGCAG	1 cut(s)	235
BspPI	GGATC	3 cut(s)	352, 375, 616
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	100, 101
BssMI	GATC	5 cut(s)	147, 344, 367, 564, 608
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	102
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	430, 571
BstC8I	GCNNGC	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	81, 348
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	150, 347, 370, 567, 611
BstMBI	GATC	5 cut(s)	147, 344, 367, 564, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 230
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	104, 211, 214, 217
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	107, 453, 476
Cac8I	GCNNGC	1 cut(s)	334
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	105
CseI	GACGC	1 cut(s)	318
CviJI	RGCY	8 cut(s)	48, 85, 107, 117, 238, 251, 453, 476
CviKI_1	RGCY	8 cut(s)	48, 85, 107, 117, 238, 251, 453, 476
DdeI	CTNAG	2 cut(s)	81, 348
DpnI	GATC	5 cut(s)	149, 346, 369, 566, 610
DpnII	GATC	5 cut(s)	147, 344, 367, 564, 608
Eam1104I	CTCTTC	2 cut(s)	430, 571
EarI	CTCTTC	2 cut(s)	430, 571
Eco47III	AGCGCT	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	276, 360
EcoRII	CCWGG	1 cut(s)	100
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
Fnu4HI	GCNGC	4 cut(s)	118, 225, 228, 231
Fsp4HI	GCNGC	4 cut(s)	118, 225, 228, 231
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	4 cut(s)	118, 225, 228, 231
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	3 cut(s)	107, 453, 476
HapII	CCGG	2 cut(s)	86, 650
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	249
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	86, 650
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	502, 634
Hpy188I	TCNGA	5 cut(s)	45, 256, 319, 349, 625
Hpy188III	TCNNGA	3 cut(s)	198, 518, 606
Hpy8I	GTNNAC	2 cut(s)	502, 634
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	4 cut(s)	158, 290, 335, 390
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	120, 233, 282, 362, 401
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 230
HpyF3I	CTNAG	2 cut(s)	81, 348
HpySE526I	ACGT	1 cut(s)	303
HspAI	GCGC	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	147, 344, 367, 564, 608
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	9 cut(s)	8, 87, 99, 114, 183, 219, 351, 591, 599
Lsp1109I	GCAGC	4 cut(s)	104, 211, 214, 217
MaeII	ACGT	1 cut(s)	303
MalI	GATC	5 cut(s)	149, 346, 369, 566, 610
MboI	GATC	5 cut(s)	147, 344, 367, 564, 608
MboII	GAAGA	7 cut(s)	173, 269, 272, 332, 447, 562, 588
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	110, 155, 373, 425
MmeI	TCCRAC	1 cut(s)	23
MnlI	CCTC	4 cut(s)	214, 228, 464, 538
MseI	TTAA	3 cut(s)	29, 441, 661
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	2 cut(s)	86, 650
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	104, 230
NdeII	GATC	5 cut(s)	147, 344, 367, 564, 608
NlaIV	GGNNCC	3 cut(s)	106, 202, 411
PasI	CCCWGGG	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	119, 226, 229, 232
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	106, 202, 411
PspPI	GGNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	29, 441, 661
SatI	GCNGC	4 cut(s)	118, 225, 228, 231
Sau3AI	GATC	5 cut(s)	147, 344, 367, 564, 608
Sau96I	GGNCC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	8 cut(s)	50, 139, 206, 253, 275, 306, 415, 470
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	110, 155, 373, 425
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	146, 534
TasI	AATT	4 cut(s)	110, 155, 373, 425
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	29, 441, 661
Tru9I	TTAA	3 cut(s)	29, 441, 661
TseI	GCWGC	4 cut(s)	117, 224, 227, 230
TspDTI	ATGAA	3 cut(s)	261, 309, 419
TspGWI	ACGGA	2 cut(s)	143, 196
XapI	RAATTY	2 cut(s)	110, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.