Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

11570496 .. 11571011

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG065600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAATAATACTAGCAACTTCCCTGGTGAATATGCTTATGGATCTGGACATATCAACCCTCTGAAAGCTATTGATCCGGGGCTTGTCTATGAAGCTTCTAAAGAAGATTATATAAACTTTCTCTGCATGGTGTTCGATGAGGCTGATGTTAGACTTATTTCTGGACTGAACAGGAATTGCCCCACAAGCTTTGACAAAGGATCGCCAAAGGATCACAACTATCCTTCATTGGCATCTGTTGTTACACCAACGATACCGTTTAACATTAGCTTTCATAGAACAGTTAAAAATGTTCGCCTTTCAAACTCTACATACAAGGCCAAAATCTTGCCAAATTCTGAGGTTGACATCAAAGTGGTGCCTGAAGTTCTTTCCTTTAATTCACTGAATGAGGAGAAGACTTTCGATGTGACCATTGTCGGGAAAGCTTTGCAAGTTGGATCATATGTGTCTTCATCGCTCATTTGGTCTGATGGAACTCATAATGTCAGAAGTCCAATTCTTATAAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

171

Amino Acids

18.85

Weight (kDa)

6.06

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	71 - 169	1.4e-25	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	506
AccB1I	GGYRCC	1 cut(s)	358
AclWI	GGATC	5 cut(s)	49, 68, 208, 219, 448
AcsI	RAATTY	1 cut(s)	334
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	68, 95, 189, 270, 428
AluI	AGCT	5 cut(s)	68, 95, 189, 270, 428
AlwI	GGATC	5 cut(s)	49, 68, 208, 219, 448
AoxI	GGCC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	401
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	358
BbsI	GAAGAC	2 cut(s)	404, 444
BccI	CCATC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	115, 149
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	78
BfaI	CTAG	1 cut(s)	12
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	24, 78
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	24, 78
BmsI	GCATC	1 cut(s)	242
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	404, 444
BpuMI	CCSGG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	22, 77
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	22, 77
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	420
BsnI	GGCC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	41, 73, 200, 211, 440
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	360
BspPI	GGATC	5 cut(s)	49, 68, 208, 219, 448
BspT107I	GGYRCC	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	22, 77
BssMI	GATC	5 cut(s)	41, 73, 200, 211, 440
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	2 cut(s)	258, 283
BstDEI	CTNAG	1 cut(s)	339
BstKTI	GATC	5 cut(s)	44, 76, 203, 214, 443
BstMBI	GATC	5 cut(s)	41, 73, 200, 211, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	24
BstPAI	GACNNNNGTC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	22, 76
BstV2I	GAAGAC	2 cut(s)	404, 444
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	510
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	8 cut(s)	68, 82, 95, 143, 189, 270, 320, 428
CviKI_1	RGCY	8 cut(s)	68, 82, 95, 143, 189, 270, 320, 428
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	43, 75, 202, 213, 442
DpnII	GATC	5 cut(s)	41, 73, 200, 211, 440
Eco57I	CTGAAG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	22
FaeI	CATG	1 cut(s)	130
FatI	CATG	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	445
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	130
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	3 cut(s)	93, 187, 426
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	4 cut(s)	63, 340, 472, 491
Hpy188III	TCNNGA	3 cut(s)	45, 162, 421
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	258, 283
HpyCH4V	TGCA	2 cut(s)	126, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	41, 73, 200, 211, 440
LpnPI	CCDG	7 cut(s)	9, 30, 36, 90, 147, 157, 375
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	241, 409
MalI	GATC	5 cut(s)	43, 75, 202, 213, 442
MboI	GATC	5 cut(s)	41, 73, 200, 211, 440
MboII	GAAGA	3 cut(s)	116, 409, 444
MflI	RGATCY	1 cut(s)	41
MluCI	AATT	4 cut(s)	175, 334, 379, 498
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	69, 133, 334, 385
MroXI	GAANNNNTTC	1 cut(s)	401
MseI	TTAA	4 cut(s)	261, 285, 378, 514
MslI	CAYNNNNRTG	1 cut(s)	353
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	24, 78
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	186
NciI	CCSGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	445
NdeII	GATC	5 cut(s)	41, 73, 200, 211, 440
NlaIII	CATG	1 cut(s)	130
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	401
PshAI	GACNNNNGTC	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	506
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	1 cut(s)	353
SaqAI	TTAA	4 cut(s)	261, 285, 378, 514
Sau3AI	GATC	5 cut(s)	41, 73, 200, 211, 440
ScaI	AGTACT	1 cut(s)	511
ScrFI	CCNGG	2 cut(s)	24, 78
SetI	ASST	6 cut(s)	70, 97, 191, 272, 345, 430
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	353
Sse9I	AATT	4 cut(s)	175, 334, 379, 498
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	22, 76
TaaI	ACNGT	2 cut(s)	258, 283
TaqI	TCGA	2 cut(s)	135, 405
TasI	AATT	4 cut(s)	175, 334, 379, 498
TatI	WGTACW	1 cut(s)	509
Tru1I	TTAA	4 cut(s)	261, 285, 378, 514
Tru9I	TTAA	4 cut(s)	261, 285, 378, 514
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	409
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	5 cut(s)	17, 105, 216, 263, 444
TspRI	CASTG	1 cut(s)	390
XapI	RAATTY	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	401
XspI	CTAG	1 cut(s)	12
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.