Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

3324014 .. 3324310

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1039400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGGAGCAAAAGTTATACCAATGAAATCATTTATGGTTACTTTTCCTAGAACAGTGAAAAATGTTAGCCCTGCAACCTCAACTTACAAGGCTAAAATCCTGCCAGGCCCTAAGGTTGACATCAAAGTGGTTCCTGAAGTTCTTTCGTTCAAGTCCTTGAATGAGGAAAAAAATTTCAATTTGACCATTGTTGGAACAGGTTTGCCAGATGGATCTCATATCTCCGCAGAGCTGATCTGGTCTGATGAAACTCATAGCATTAGAAGTCCAATTCTCATAAGCAGCTCAGTAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

99

Amino Acids

10.66

Weight (kDa)

9.4

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	10 - 93	3.7e-21	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	172
AcuI	CTGAAG	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	151, 160, 178
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	232, 285
AluI	AGCT	2 cut(s)	232, 285
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	111
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	105
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	212, 234
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	220
BssMI	GATC	2 cut(s)	212, 234
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	55
BstDEI	CTNAG	2 cut(s)	111, 286
BstKTI	GATC	2 cut(s)	215, 237
BstMBI	GATC	2 cut(s)	212, 234
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	107
CviJI	RGCY	5 cut(s)	69, 92, 108, 232, 285
CviKI_1	RGCY	5 cut(s)	69, 92, 108, 232, 285
DdeI	CTNAG	2 cut(s)	111, 286
DpnI	GATC	2 cut(s)	214, 236
DpnII	GATC	2 cut(s)	212, 234
Eco57I	CTGAAG	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	103
FaiI	YATR	5 cut(s)	17, 35, 219, 255, 278
Fnu4HI	GCNGC	1 cut(s)	283
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	1 cut(s)	283
HaeIII	GGCC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	2 cut(s)	111, 286
Kzo9I	GATC	2 cut(s)	212, 234
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	8 cut(s)	84, 90, 113, 117, 147, 183, 219, 223
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	214, 236
MboI	GATC	2 cut(s)	212, 234
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	3 cut(s)	172, 178, 270
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	88, 157
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	212, 234
NlaIV	GGNNCC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	212, 234
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	5 cut(s)	80, 117, 202, 234, 287
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	172, 178, 270
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	55
TasI	AATT	3 cut(s)	172, 178, 270
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	282
TspDTI	ATGAA	2 cut(s)	38, 261
TspRI	CASTG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	172
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.