Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001227.1

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Forward (+)

18187 .. 19050

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001227.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgaactccactaaagatcctcgagccaacatattaagaagcgaaatcataaaagatgattttgcacctatggttgcttccttctcatcacgtgggccaaataaatttttacctgaaattataaagacatatattagtgccccggggattgatattttggcagcatattcacctgttgcccctatcacgaagagtgctgaagacaagcggcgtgtgagatacactctactatctggaacctccatggcttgtccccatgttgcaggtgtatctgcatatgttaaagagatgcaccctgattggtcttcaactgccattaaatcatctcttatgactacaacttggcctatgaataatactagcaacttccctggtgaatatgcttatggatctggacatatcaaccctctgaaagctattgatccgaggcttgtctacgaagcttctaaagaagattatataaactttctctacatggtgttcgaagaggctgatgttagacttatttctggactgaattggaattgccccacaagctttgacaaaggatcgccaaaggatcacaactatccttcattggcatctgttgttacaccaacgataccgtttaacattagctttcatagaacagttaaaaatgttcgcctttcaaactctacatacaaggccaaaatcttgccaaattctgaggttgacatcaaagtggtgcctgaagttgtttcctttaattcactgaatgaggagaagactttcgatgtgaccattgtcgggaaagctttgcaagttggatcatatgtgtcttcatcgctcatttggtctgatggaactcataatgtcagaagtccaattcttataattacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

287

Amino Acids

31.75

Weight (kDa)

8.37

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	122, 854
AarI	CACCTGC	1 cut(s)	254
Acc36I	ACCTGC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	706
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	6 cut(s)	11, 397, 416, 556, 567, 796
AcsI	RAATTY	2 cut(s)	104, 682
AcuI	CTGAAG	2 cut(s)	219, 732
AcvI	CACGTG	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	768
AgsI	TTSAA	2 cut(s)	309, 651
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	5 cut(s)	416, 443, 537, 618, 776
AluI	AGCT	5 cut(s)	416, 443, 537, 618, 776
AlwI	GGATC	6 cut(s)	11, 397, 416, 556, 567, 796
Ama87I	CYCGRG	2 cut(s)	21, 142
AoxI	GGCC	3 cut(s)	95, 344, 666
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	2 cut(s)	104, 682
Asp700I	GAANNNNTTC	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	143, 144
AsuHPI	GGTGA	2 cut(s)	162, 386
AsuII	TTCGAA	1 cut(s)	483
AvaI	CYCGRG	2 cut(s)	21, 142
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	706
BbrPI	CACGTG	1 cut(s)	92
BbsI	GAAGAC	4 cut(s)	207, 297, 752, 792
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	1 cut(s)	815
BciT130I	CCWGG	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	143, 144
BfaI	CTAG	1 cut(s)	360
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	162, 209
BlsI	GCNGC	2 cut(s)	163, 210
Bme1390I	CCNGG	3 cut(s)	143, 144, 372
BmeT110I	CYCGRG	2 cut(s)	21, 142
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	238, 708
BmrFI	CCNGG	3 cut(s)	143, 144, 372
BmsI	GCATC	2 cut(s)	279, 590
BoxI	GACNNNNGTC	1 cut(s)	764
BpiI	GAAGAC	4 cut(s)	207, 297, 752, 792
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
Bpu14I	TTCGAA	1 cut(s)	483
BpuMI	CCSGG	2 cut(s)	143, 144
BsaAI	YACGTR	1 cut(s)	92
BsaJI	CCNNGG	6 cut(s)	141, 142, 143, 243, 370, 425
Bsc4I	CCNNNNNNNGG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	6 cut(s)	141, 142, 143, 243, 370, 425
BseLI	CCNNNNNNNGG	1 cut(s)	768
BseMII	CTCAG	1 cut(s)	678
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	97, 346, 668
BshNI	GGYRCC	1 cut(s)	706
BsiHKCI	CYCGRG	2 cut(s)	21, 142
BsiSI	CCGG	1 cut(s)	143
BslFI	GGGAC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	237
BsnI	GGCC	3 cut(s)	97, 346, 668
BsoBI	CYCGRG	2 cut(s)	21, 142
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	3 cut(s)	97, 346, 668
BspCNI	CTCAG	1 cut(s)	679
BspLI	GGNNCC	2 cut(s)	238, 708
BspMI	ACCTGC	1 cut(s)	254
BspPI	GGATC	6 cut(s)	11, 397, 416, 556, 567, 796
BspT104I	TTCGAA	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	706
BssECI	CCNNGG	6 cut(s)	141, 142, 143, 243, 370, 425
BssMI	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	606, 631
Bst6I	CTCTTC	2 cut(s)	185, 480
BstBAI	YACGTR	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	243
BstKTI	GATC	6 cut(s)	19, 392, 424, 551, 562, 791
BstMBI	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
BstMWI	GCNNNNNNNGC	1 cut(s)	534
BstNI	CCWGG	1 cut(s)	372
BstPAI	GACNNNNGTC	1 cut(s)	764
BstSCI	CCNGG	3 cut(s)	141, 142, 370
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	4 cut(s)	207, 297, 752, 792
BstX2I	RGATCY	2 cut(s)	16, 389
BstYI	RGATCY	2 cut(s)	16, 389
BsuRI	GGCC	3 cut(s)	97, 346, 668
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	789
BtsIMutI	CAGTG	1 cut(s)	731
BveI	ACCTGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	95
Cfr9I	CCCGGG	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	244, 257, 475
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	6 cut(s)	18, 391, 423, 550, 561, 790
DpnII	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
Eam1104I	CTCTTC	2 cut(s)	185, 480
EarI	CTCTTC	2 cut(s)	185, 480
Eco130I	CCWWGG	1 cut(s)	243
Eco57I	CTGAAG	2 cut(s)	219, 732
Eco72I	CACGTG	1 cut(s)	92
Eco88I	CYCGRG	2 cut(s)	21, 142
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	247, 260, 478
FaqI	GGGAC	1 cut(s)	237
FatI	CATG	3 cut(s)	243, 256, 474
FauNDI	CATATG	2 cut(s)	277, 793
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	162, 209
Fsp4HI	GCNGC	2 cut(s)	162, 209
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	162, 209
HaeIII	GGCC	3 cut(s)	97, 346, 668
HapII	CCGG	1 cut(s)	143
Hin1II	CATG	3 cut(s)	247, 260, 478
HincII	GTYRAC	1 cut(s)	694
HindII	GTYRAC	1 cut(s)	694
HindIII	AAGCTT	3 cut(s)	441, 535, 774
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	162, 386
Hpy166II	GTNNAC	2 cut(s)	436, 694
Hpy188I	TCNGA	5 cut(s)	411, 426, 688, 820, 839
Hpy188III	TCNNGA	5 cut(s)	187, 234, 393, 510, 769
Hpy8I	GTNNAC	2 cut(s)	436, 694
HpyAV	CCTTC	2 cut(s)	91, 582
HpyCH4III	ACNGT	2 cut(s)	606, 631
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	65, 263, 275, 292, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	534
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	3 cut(s)	247, 260, 478
Kzo9I	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
Lsp1109I	GCAGC	1 cut(s)	173
LweI	GCATC	2 cut(s)	279, 590
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	589, 757
MalI	GATC	6 cut(s)	18, 391, 423, 550, 561, 790
MboI	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
MboII	GAAGA	7 cut(s)	202, 212, 297, 464, 497, 757, 792
MflI	RGATCY	2 cut(s)	16, 389
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	8 cut(s)	104, 117, 517, 523, 682, 727, 846, 855
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	7 cut(s)	30, 250, 417, 420, 481, 682, 733
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	7 cut(s)	35, 282, 318, 609, 633, 726, 862
MslI	CAYNNNNRTG	1 cut(s)	701
MspI	CCGG	1 cut(s)	143
MspR9I	CCNGG	3 cut(s)	143, 144, 372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	534
NciI	CCSGG	2 cut(s)	143, 144
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	2 cut(s)	277, 793
NdeII	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
NlaIII	CATG	3 cut(s)	247, 260, 478
NlaIV	GGNNCC	2 cut(s)	238, 708
NmuCI	GTSAC	1 cut(s)	757
NspV	TTCGAA	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	21
PaqCI	CACCTGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	749
PkrI	GCNGC	2 cut(s)	163, 210
PmaCI	CACGTG	1 cut(s)	92
PmlI	CACGTG	1 cut(s)	92
Ppu21I	YACGTR	1 cut(s)	92
PshAI	GACNNNNGTC	1 cut(s)	764
PsiI	TTATAA	2 cut(s)	122, 854
Psp6I	CCWGG	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	238, 708
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	21
PsuI	RGATCY	2 cut(s)	16, 389
RseI	CAYNNNNRTG	1 cut(s)	701
SaqAI	TTAA	7 cut(s)	35, 282, 318, 609, 633, 726, 862
SatI	GCNGC	2 cut(s)	162, 209
Sau3AI	GATC	6 cut(s)	16, 389, 421, 548, 559, 788
Sau96I	GGNCC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	143, 144, 372
SduI	GDGCHC	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	279, 590
Sfr274I	CTCGAG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	483
SlaI	CTCGAG	1 cut(s)	21
SmaI	CCCGGG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	701
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	8 cut(s)	104, 117, 517, 523, 682, 727, 846, 855
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	141, 142, 370
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	606, 631
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	3 cut(s)	22, 483, 753
TasI	AATT	8 cut(s)	104, 117, 517, 523, 682, 727, 846, 855
TauI	GCSGC	1 cut(s)	211
Tru1I	TTAA	7 cut(s)	35, 282, 318, 609, 633, 726, 862
Tru9I	TTAA	7 cut(s)	35, 282, 318, 609, 633, 726, 862
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	5 cut(s)	17, 365, 564, 611, 792
TspMI	CCCGGG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	738
XapI	RAATTY	2 cut(s)	104, 682
XhoI	CTCGAG	1 cut(s)	21
XmaI	CCCGGG	1 cut(s)	142
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.