Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001233

Physical Location & Seq

Genomic Coordinates Reverse (-)

9052963 .. 9055956

Gene Structure 2994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG055400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGAATGTTACTGACAATAGTAGTGCCGCTGGTGAATTTGCTTATGGATCTGGACATATCAATCCTGTCAAAGCTATAGACCCAGGGCTTGTGTATGAAGCTTCTAAGGAAGACTACATAAAGTTGCTATGCTCGGTCTTGGATCAGGCCGATGTTAGACTTATATCAGGAGATAACAGCACTTGCTCTACAGGCTCTGACAAAGGATCTTTACAGGATCACAATTACCCTTCACTAGCAGCCGTTGTCACACCAAACAAATCTTTTTCGTTGAAATTTAACAGAAAAGTTAAGAATGTTGGCCTTGCAAACTCCACTTACAAGGCCACAATATTCGCCAACTCTACTCAAGTTGACGTCAAAGTGGTGCCTCAAGTTCTTTCCTTCAAGTCCTTGAATGAGGAGAAGACTTTTGATGTGACAGTTGCCGGAAAAGGTTTGCCAGATGAAGTACAATCACATGTGTCTGCATCGCTGGTGTGGTCTGATGGAATTCATAGCCTCATTGGTGCTCGGTTTTGCAACTCATCCTCTGAGTCTGCAAGGGATGAAAGTGGCCATGGAACACACACTGCCTCAACAGCAGCGGGAATGCTGCATGTAAAGGATGTCAGCTTTTATGGTATAGCCCAAGGCATTGCAAGAGGGGGAGTTCCCTCAGCGAGAGTTGCTGCGTATAGAGTCTGCAGAGACCAAGGATGCCCTACAGAGGCTATCTTGGCTGCTTTTGATGATGCTATTGCCGATGGAGTTGATATCATTACAATTTCAATAGGAAGCCCAGATGTAACTGTACTACTGCAGCATGATCCAATTGCTGTCGGATCTTTCCATGCAATGGCAAAGGGGATACATCAAACTCGGCAGGCAATAATGGTCCTAGAGCTAGTACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

298

Amino Acids

31.39

Weight (kDa)

5.77

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
fn3_6	PF17766	73 - 167	2.1e-20	Fibronectin type-III domain
Peptidase_S8	PF00082	179 - 283	9e-13	Subtilase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59110
malus_domestica	MD02G1289000.v1.1 MD03G1083700.v1.1 MD03G1083900.v1.1 MD07G1037400.v1.1 MD07G1039400.v1.1
pyrus_communis	pycom03g06630 pycom11g07680 pycom11g07730
rosa_chinensis	RchiOBHm_Chr1g0323301 RchiOBHm_Chr1g0323331 RchiOBHm_Chr1g0323451
rosa_laevigata	RLG00000035887
rosa_multiflora	Rmu_co8214780.1_g000001 Rmu_co8240921.1_g000001 Rmu_co8297809.1_g000001 Rmu_co8485349.1_g000002 Rmu_sc0000507.1_g000014 Rmu_sc0001227.1_g000005 Rmu_sc0001449.1_g000008 Rmu_sc0002263.1_g000075 Rmu_sc0003418.1_g000006 Rmu_sc0012343.1_g000011 Rmu_sc0016895.1_g000001 Rmu_sc0034098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00326170 Rroxscaffold_4G00326560 Rroxscaffold_4G00326630 Rroxscaffold_4G00326660
rosa_rugosa	Rorug01G0037500 Rorug05G0379400 Rorug05G0379400 Rorug05G0379500
rosa_samantha	Rh1AG054600 Rh1AG054800 Rh1AG055100 Rh1AG055400 Rh1AG059700 Rh1AG082800 Rh1BG050200 Rh1BG065700 Rh1CG055900 Rh1CG056100 Rh1CG057600 Rh1CG061500 Rh1DG059700 Rh1DG059800 Rh1DG060000 Rh1DG060300 Rh1DG061500 Rh1DG065600 Rh5AG439300 Rh5BG456000 Rh5BG456200 Rh5DG470700 Rh5DG471000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	360
AccB1I	GGYRCC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	838
AciI	CCGC	2 cut(s)	27, 587
AclWI	GGATC	6 cut(s)	55, 150, 214, 225, 803, 832
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	3 cut(s)	35, 275, 492
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	3 cut(s)	453, 795, 891
AfiI	CCNNNNNNNGG	2 cut(s)	709, 838
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	274, 388, 397, 771
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	4 cut(s)	74, 101, 615, 886
AluI	AGCT	4 cut(s)	74, 101, 615, 886
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	6 cut(s)	55, 150, 214, 225, 803, 832
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	4 cut(s)	147, 301, 324, 556
ApeKI	GCWGC	6 cut(s)	239, 584, 595, 671, 722, 802
ApoI	RAATTY	3 cut(s)	35, 275, 492
AspS9I	GGNCC	1 cut(s)	877
AsuHPI	GGTGA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	877
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	367
BbsI	GAAGAC	2 cut(s)	117, 413
Bbv12I	GWGCWC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	658
BbvI	GCAGC	6 cut(s)	251, 582, 596, 658, 709, 814
BccI	CCATC	2 cut(s)	482, 740
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	843
BcoDI	GTCTC	1 cut(s)	684
BfaI	CTAG	3 cut(s)	236, 881, 887
BfmI	CTRYAG	5 cut(s)	75, 189, 685, 705, 800
BfuI	GTATCC	1 cut(s)	843
BisI	GCNGC	7 cut(s)	27, 240, 585, 596, 672, 723, 803
BlsI	GCNGC	7 cut(s)	28, 241, 586, 597, 673, 724, 804
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	877
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	3 cut(s)	479, 689, 724
BpiI	GAAGAC	2 cut(s)	117, 413
Bpu10I	CCTNAGC	1 cut(s)	658
BpuEI	CTTGAG	2 cut(s)	333, 357
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	684
BsaJI	CCNNGG	5 cut(s)	82, 83, 559, 631, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	709, 838
Bse3DI	GCAATG	2 cut(s)	636, 843
BseBI	CCWGG	1 cut(s)	84
BseDI	CCNNGG	5 cut(s)	82, 83, 559, 631, 694
BseGI	GGATG	4 cut(s)	527, 553, 613, 704
BseLI	CCNNNNNNNGG	2 cut(s)	709, 838
BseMI	GCAATG	2 cut(s)	636, 843
BseMII	CTCAG	2 cut(s)	525, 672
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	6 cut(s)	251, 582, 596, 658, 709, 814
BshFI	GGCC	4 cut(s)	149, 303, 326, 558
BshNI	GGYRCC	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	709, 838
BsmAI	GTCTC	1 cut(s)	684
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	4 cut(s)	149, 303, 326, 558
Bso31I	GGTCTC	1 cut(s)	684
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
Bsp19I	CCATGG	1 cut(s)	559
BspACI	CCGC	2 cut(s)	27, 587
BspANI	GGCC	4 cut(s)	149, 303, 326, 558
BspCNI	CTCAG	2 cut(s)	526, 671
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	2 cut(s)	689, 804
BspPI	GGATC	6 cut(s)	55, 150, 214, 225, 803, 832
BspT107I	GGYRCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	684
BsrDI	GCAATG	2 cut(s)	636, 843
BssECI	CCNNGG	5 cut(s)	82, 83, 559, 631, 694
BssMI	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	3 cut(s)	559, 631, 694
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	3 cut(s)	424, 793, 894
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	867
BstDEI	CTNAG	3 cut(s)	105, 534, 658
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	4 cut(s)	527, 553, 613, 704
BstKTI	GATC	6 cut(s)	50, 145, 209, 220, 811, 827
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 581, 668, 719
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	2 cut(s)	464, 602
BstSCI	CCNGG	1 cut(s)	82
BstSFI	CTRYAG	5 cut(s)	75, 189, 685, 705, 800
BstV1I	GCAGC	6 cut(s)	251, 582, 596, 658, 709, 814
BstV2I	GAAGAC	2 cut(s)	117, 413
BstX2I	RGATCY	3 cut(s)	47, 206, 824
BstYI	RGATCY	3 cut(s)	47, 206, 824
BsuI	GTATCC	1 cut(s)	843
BsuRI	GGCC	4 cut(s)	149, 303, 326, 558
BtgI	CCRYGG	1 cut(s)	559
BtgZI	GCGATG	1 cut(s)	456
BtsCI	GGATG	4 cut(s)	527, 553, 613, 704
BtsI	GCAGTG	1 cut(s)	570
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	867
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	877
Csp6I	GTAC	3 cut(s)	452, 794, 890
CviAII	CATG	5 cut(s)	461, 560, 599, 806, 833
CviQI	GTAC	3 cut(s)	452, 794, 890
DdeI	CTNAG	3 cut(s)	105, 534, 658
DpnI	GATC	6 cut(s)	49, 144, 208, 219, 810, 826
DpnII	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
EaeI	YGGCCR	1 cut(s)	556
Eco130I	CCWWGG	3 cut(s)	559, 631, 694
Eco31I	GGTCTC	1 cut(s)	684
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	82
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	3 cut(s)	559, 631, 694
ErhI	CCWWGG	3 cut(s)	559, 631, 694
FaeI	CATG	5 cut(s)	464, 563, 602, 809, 836
FatI	CATG	5 cut(s)	460, 559, 598, 805, 832
FauI	CCCGC	1 cut(s)	580
Fnu4HI	GCNGC	7 cut(s)	27, 240, 585, 596, 672, 723, 803
FokI	GGATG	4 cut(s)	514, 560, 620, 711
Fsp4HI	GCNGC	7 cut(s)	27, 240, 585, 596, 672, 723, 803
FspBI	CTAG	3 cut(s)	236, 881, 887
GluI	GCNGC	7 cut(s)	27, 240, 585, 596, 672, 723, 803
HaeIII	GGCC	4 cut(s)	149, 303, 326, 558
HapII	CCGG	1 cut(s)	429
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	5 cut(s)	464, 563, 602, 809, 836
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	536, 681
HpaII	CCGG	1 cut(s)	429
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	199, 487, 535, 824
Hpy188III	TCNNGA	2 cut(s)	51, 168
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	240, 394
HpyCH4III	ACNGT	3 cut(s)	424, 793, 894
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	9 cut(s)	308, 470, 522, 542, 598, 641, 687, 802, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 581, 668, 719
HpyF3I	CTNAG	3 cut(s)	105, 534, 658
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	464, 563, 602, 809, 836
Kzo9I	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
Lsp1109I	GCAGC	6 cut(s)	251, 582, 596, 658, 709, 814
LweI	GCATC	3 cut(s)	479, 689, 724
MaeI	CTAG	3 cut(s)	236, 881, 887
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	4 cut(s)	7, 247, 418, 787
MalI	GATC	6 cut(s)	49, 144, 208, 219, 810, 826
MboI	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
MboII	GAAGA	2 cut(s)	122, 418
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	3 cut(s)	47, 206, 824
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	6 cut(s)	35, 223, 275, 492, 765, 813
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	2 cut(s)	545, 690
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	8 cut(s)	381, 394, 512, 541, 586, 638, 667, 703
Mox20I	TGGCCA	1 cut(s)	558
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	2 cut(s)	279, 291
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	2 cut(s)	29, 587
MspI	CCGG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	813
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	192, 581, 668, 719
NcoI	CCATGG	1 cut(s)	559
NdeII	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
NlaIII	CATG	5 cut(s)	464, 563, 602, 809, 836
NlaIV	GGNNCC	1 cut(s)	369
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	2 cut(s)	247, 418
NspI	RCATGY	2 cut(s)	464, 602
PasI	CCCWGGG	1 cut(s)	83
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	597
PflMI	CCANNNNNTGG	1 cut(s)	838
PkrI	GCNGC	7 cut(s)	28, 241, 586, 597, 673, 724, 804
PleI	GAGTC	2 cut(s)	544, 689
PpsI	GAGTC	2 cut(s)	544, 689
PscI	ACATGT	1 cut(s)	460
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	877
PstI	CTGCAG	2 cut(s)	689, 804
PstNI	CAGNNNCTG	1 cut(s)	197
PsuI	RGATCY	3 cut(s)	47, 206, 824
RsaI	GTAC	3 cut(s)	453, 795, 891
RsaNI	GTAC	3 cut(s)	452, 794, 890
SaqAI	TTAA	2 cut(s)	279, 291
SatI	GCNGC	7 cut(s)	27, 240, 585, 596, 672, 723, 803
Sau3AI	GATC	6 cut(s)	47, 142, 206, 217, 808, 824
Sau96I	GGNCC	1 cut(s)	877
SchI	GAGTC	2 cut(s)	545, 690
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	6 cut(s)	76, 103, 360, 439, 617, 888
SfaNI	GCATC	3 cut(s)	479, 689, 724
SfcI	CTRYAG	5 cut(s)	75, 189, 685, 705, 800
SinI	GGWCC	1 cut(s)	877
SmlI	CTYRAG	2 cut(s)	348, 372
SmoI	CTYRAG	2 cut(s)	348, 372
Sse9I	AATT	6 cut(s)	35, 223, 275, 492, 765, 813
SsiI	CCGC	2 cut(s)	27, 587
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	3 cut(s)	236, 881, 887
StyD4I	CCNGG	1 cut(s)	82
StyI	CCWWGG	3 cut(s)	559, 631, 694
TaaI	ACNGT	3 cut(s)	424, 793, 894
TaiI	ACGT	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	6 cut(s)	35, 223, 275, 492, 765, 813
TatI	WGTACW	2 cut(s)	451, 793
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	279, 291
Tru9I	TTAA	2 cut(s)	279, 291
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	2 cut(s)	247, 418
TseI	GCWGC	6 cut(s)	239, 584, 595, 671, 722, 802
Tsp45I	GTSAC	2 cut(s)	247, 418
TspDTI	ATGAA	5 cut(s)	17, 111, 462, 485, 564
TspRI	CASTG	1 cut(s)	577
Van91I	CCANNNNNTGG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	3 cut(s)	35, 275, 492
XceI	RCATGY	2 cut(s)	464, 602
XspI	CTAG	3 cut(s)	236, 881, 887
ZraI	GACGTC	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.