Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

2209507 .. 2215563

Gene Structure 6057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02782.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGTCAATGATGCTTTTACGGGTTGTTCCAGGGAGGATAGTTCCAAGTTTCAATAATATTGTTGGAGTTGATAGAACATTACCCTACAACGTCTCCTTCCTTCCGTCTCCTCTCACCGTGCCTAGGGTTTTCTCGCCTTCATCTTCTTCAACCTCTCTCTGCAATTCCTCTGGTGGGGAAGCAGACTCTAATGGTGTGATTTTCACATTTTACAGGACAGTAGCAGCTTTTGTACACAAAGATATGGACAAAAACAACAAGATTGATAATGCAGTTGTAGAAAAAAGAAGAAACATTTATGCAGCCATAGAAAACAGTGATGATGACTTCGAGGACCCTCAGTTGAAGATTCAACCCAAGAAAAGAAAAATGGAAGCTAAGAAAGAGAAAGTAGGTGTTGCGGTGAGAAGAAACAAGATCGAAAAGAAAGCCAAAGTCACTGCAAAGAAATCAAACAAAAACAAAAAGAAAGATGCTGCTGAAGAAGTTCAAGAGGATGCTTCCGACCAATTTATGGACATAGCTACTGAACAAGTTCAAGAGGGTGCTGCTGAAGATGTTCAAGAGGATGCTGCTGAAGAAGTTCAAGAGGATGTTGCCGACCAATTTATGGAGATAGCTACCGAACAAGTTCAAAAGGGTGCTGCTGAACAAGTTCAAGAGGATGCTACTGACGAAATTATGGAGATAGCTACTGAACAAGTTCAAGAGGGTGTTGCTGAACAAGTTCAAGAGGAACCTAAATACTTGGCATTAGAAGATTGGGTAAACACAGAGGAAATAGAGAATCAACATGCCAAAGTGGATGGAAAGGGTAAGGAAATGGTTGAATTTAACTTTGAGAATGGAGGAGGAGCTGAAGGAAATGTAGATGAGTTTGAGGATGCAATCTATGAACAAAATGCCGCAGAGACAGAAAGAATCTTGAAGAAGTTTTTCAATCAGGATAGGGATGGAGAAACTGAGGTATTTTCGAAGAGAATGAAACATAACAAAATGTGTACGCCGGAAGAACTTGAACAGTGGATAAAGCAGATGGAAAAGGAGGCCCTAATATATAACGGAATTGAGTATCAAAGCAGTGAAGACAAAGACGTTAACATTGTGGAGCACCGGCAGGATGGGTCTGCAATAGACACCTGCACCTCCTGCAAGAGGAATTTTGAGTACATAGAACAGCTATGTGAAGAAAAAAAAGAAGTGACCAAAAAATATAAGCAGTTGAAGGCAAAGCTGAAGAAGAAGGAAGAACATATTAAAAAGTTAAGGATAAAGTGCAGACAACTATGGCTACTGCAAAAGGGTTTAGAGGGTGCTAGGAGTGAGAAAGACACTGAGAGTGAAAAAGAAGCTGCAGAGAGTGTGGCTAAGGTTGTTACTGAGAAGGAAATTTGTCGTTCCAAATGTGCAACTGCACAAGAAGCTGAGAAGGGTGCAGCTGCAAAAGATGACAAAGTAGCTGAAACTACCACAGCAAAGGCCACAGAAAAGGGCAAAGTTGAAAATGAAGCTCAACCTGCTACTTCCCCAAGGACGCGTTCAATATTTATTATGAATTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

522

Amino Acids

58.86

Weight (kDa)

5.02

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1148
Acc36I	ACCTGC	2 cut(s)	1148, 1525
AccB7I	CCANNNNNTGG	2 cut(s)	514, 610
AccII	CGCG	1 cut(s)	1537
AciI	CCGC	2 cut(s)	401, 906
AcsI	RAATTY	4 cut(s)	830, 1159, 1389, 1555
AcuI	CTGAAG	5 cut(s)	501, 573, 597, 879, 1256
AfaI	GTAC	3 cut(s)	234, 1003, 1169
AfiI	CCNNNNNNNGG	5 cut(s)	123, 174, 514, 610, 1155
AflIII	ACRYGT	1 cut(s)	1535
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	1522, 1554
Alw21I	GWGCWC	1 cut(s)	1113
Alw26I	GTCTC	3 cut(s)	97, 111, 905
AoxI	GGCC	2 cut(s)	1047, 1479
ApeKI	GCWGC	9 cut(s)	224, 302, 476, 548, 572, 644, 1352, 1436, 1439
ApoI	RAATTY	4 cut(s)	830, 1159, 1389, 1555
Asp700I	GAANNNNTTC	9 cut(s)	486, 534, 558, 582, 630, 654, 702, 726, 935
AspA2I	CCTAGG	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	334, 1048
AsuHPI	GGTGA	2 cut(s)	106, 415
AsuII	TTCGAA	1 cut(s)	974
AvaII	GGWCC	1 cut(s)	334
AvrII	CCTAGG	1 cut(s)	122
BbsI	GAAGAC	1 cut(s)	1092
Bbv12I	GWGCWC	1 cut(s)	1113
BbvI	GCAGC	9 cut(s)	236, 314, 463, 535, 559, 631, 1339, 1426, 1448
BccI	CCATC	4 cut(s)	800, 947, 1030, 1115
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	3 cut(s)	97, 111, 905
BfaI	CTAG	2 cut(s)	123, 1317
BfmI	CTRYAG	1 cut(s)	1353
BfuAI	ACCTGC	2 cut(s)	1148, 1525
BlnI	CCTAGG	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	334
BmgT120I	GGNCC	2 cut(s)	334, 1048
BmiI	GGNNCC	2 cut(s)	336, 738
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	5 cut(s)	463, 487, 559, 655, 874
BpiI	GAAGAC	1 cut(s)	1092
Bpu10I	CCTNAGC	1 cut(s)	1368
Bpu14I	TTCGAA	1 cut(s)	974
BsaJI	CCNNGG	3 cut(s)	29, 122, 1529
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 174, 514, 610, 1155
Bse118I	RCCGGY	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	29, 122, 1529
BseGI	GGATG	8 cut(s)	502, 574, 598, 670, 811, 889, 958, 1126
BseLI	CCNNNNNNNGG	5 cut(s)	123, 174, 514, 610, 1155
BseMII	CTCAG	5 cut(s)	353, 954, 1326, 1371, 1416
BseRI	GAGGAG	3 cut(s)	99, 864, 867
BseXI	GCAGC	9 cut(s)	236, 314, 463, 535, 559, 631, 1339, 1426, 1448
BsgI	GTGCAG	4 cut(s)	1126, 1297, 1398, 1455
Bsh1236I	CGCG	1 cut(s)	1537
BshFI	GGCC	2 cut(s)	1049, 1481
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiSI	CCGG	2 cut(s)	1007, 1114
BslI	CCNNNNNNNGG	5 cut(s)	123, 174, 514, 610, 1155
BsmAI	GTCTC	3 cut(s)	97, 111, 905
BsmBI	CGTCTC	2 cut(s)	97, 111
BsnI	GGCC	2 cut(s)	1049, 1481
Bsp119I	TTCGAA	1 cut(s)	974
Bsp1286I	GDGCHC	1 cut(s)	1113
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	401, 906
BspANI	GGCC	2 cut(s)	1049, 1481
BspCNI	CTCAG	5 cut(s)	352, 955, 1327, 1372, 1417
BspFNI	CGCG	1 cut(s)	1537
BspLI	GGNNCC	2 cut(s)	336, 738
BspMAI	CTGCAG	1 cut(s)	1357
BspMI	ACCTGC	2 cut(s)	1148, 1525
BspT104I	TTCGAA	1 cut(s)	974
BsrFI	RCCGGY	1 cut(s)	1113
BsrGI	TGTACA	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	1113
BssECI	CCNNGG	3 cut(s)	29, 122, 1529
BssMI	GATC	1 cut(s)	417
BssT1I	CCWWGG	2 cut(s)	122, 1529
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	4 cut(s)	118, 220, 317, 1023
Bst6I	CTCTTC	1 cut(s)	971
BstAPI	GCANNNNNTGC	1 cut(s)	1149
BstAUI	TGTACA	1 cut(s)	232
BstBI	TTCGAA	1 cut(s)	974
BstDEI	CTNAG	7 cut(s)	339, 378, 963, 1335, 1368, 1380, 1425
BstENI	CCTNNNNNAGG	1 cut(s)	1153
BstF5I	GGATG	8 cut(s)	502, 574, 598, 670, 811, 889, 958, 1126
BstFNI	CGCG	1 cut(s)	1537
BstKTI	GATC	1 cut(s)	420
BstMAI	GTCTC	3 cut(s)	97, 111, 905
BstMBI	GATC	1 cut(s)	417
BstMWI	GCNNNNNNNGC	3 cut(s)	1149, 1421, 1517
BstNI	CCWGG	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	797
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	1353
BstUI	CGCG	1 cut(s)	1537
BstV1I	GCAGC	9 cut(s)	236, 314, 463, 535, 559, 631, 1339, 1426, 1448
BstV2I	GAAGAC	1 cut(s)	1092
BsuRI	GGCC	2 cut(s)	1049, 1481
BtsCI	GGATG	8 cut(s)	502, 574, 598, 670, 811, 889, 958, 1126
BtsI	GCAGTG	2 cut(s)	438, 1087
BtsIMutI	CAGTG	5 cut(s)	322, 438, 1028, 1087, 1332
BveI	ACCTGC	2 cut(s)	1148, 1525
Cfr10I	RCCGGY	1 cut(s)	1113
Cfr13I	GGNCC	2 cut(s)	334, 1048
CseI	GACGC	1 cut(s)	1543
Csp6I	GTAC	3 cut(s)	233, 1002, 1168
CviAII	CATG	1 cut(s)	794
CviQI	GTAC	3 cut(s)	233, 1002, 1168
DdeI	CTNAG	7 cut(s)	339, 378, 963, 1335, 1368, 1380, 1425
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	971
EarI	CTCTTC	1 cut(s)	971
Eco130I	CCWWGG	2 cut(s)	122, 1529
Eco47I	GGWCC	1 cut(s)	334
Eco57I	CTGAAG	5 cut(s)	501, 573, 597, 879, 1256
EcoNI	CCTNNNNNAGG	1 cut(s)	1153
EcoO109I	RGGNCCY	2 cut(s)	334, 1048
EcoRI	GAATTC	1 cut(s)	1555
EcoRII	CCWGG	1 cut(s)	28
EcoT14I	CCWWGG	2 cut(s)	122, 1529
ErhI	CCWWGG	2 cut(s)	122, 1529
Esp3I	CGTCTC	2 cut(s)	97, 111
FaeI	CATG	1 cut(s)	797
FatI	CATG	1 cut(s)	793
FokI	GGATG	8 cut(s)	509, 581, 605, 677, 818, 896, 965, 1133
FspBI	CTAG	2 cut(s)	123, 1317
HaeIII	GGCC	2 cut(s)	1049, 1481
HapII	CCGG	2 cut(s)	1007, 1114
HgaI	GACGC	1 cut(s)	1543
Hin1II	CATG	1 cut(s)	797
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HinfI	GANTC	4 cut(s)	185, 349, 787, 921
HpaI	GTTAAC	1 cut(s)	1099
HpaII	CCGG	2 cut(s)	1007, 1114
HphI	GGTGA	2 cut(s)	106, 415
Hpy166II	GTNNAC	4 cut(s)	235, 769, 1002, 1099
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	9 cut(s)	491, 539, 563, 587, 659, 707, 731, 925, 944
Hpy8I	GTNNAC	4 cut(s)	235, 769, 1002, 1099
HpyAV	CCTTC	8 cut(s)	106, 110, 147, 854, 1219, 1237, 1378, 1423
HpyCH4III	ACNGT	4 cut(s)	118, 220, 317, 1023
HpyCH4IV	ACGT	2 cut(s)	90, 1095
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1149, 1421, 1517
HpyF3I	CTNAG	7 cut(s)	339, 378, 963, 1335, 1368, 1380, 1425
HpySE526I	ACGT	2 cut(s)	90, 1095
Hsp92II	CATG	1 cut(s)	797
KspAI	GTTAAC	1 cut(s)	1099
Kzo9I	GATC	1 cut(s)	417
LmnI	GCTCC	2 cut(s)	854, 1108
Lsp1109I	GCAGC	9 cut(s)	236, 314, 463, 535, 559, 631, 1339, 1426, 1448
LweI	GCATC	5 cut(s)	463, 487, 559, 655, 874
MaeI	CTAG	2 cut(s)	123, 1317
MaeII	ACGT	2 cut(s)	90, 1095
MaeIII	GTNAC	3 cut(s)	436, 1201, 1375
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	1113
MluCI	AATT	9 cut(s)	163, 509, 605, 678, 830, 1065, 1159, 1389, 1555
MluI	ACGCGT	1 cut(s)	1535
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	2 cut(s)	43, 528
MroXI	GAANNNNTTC	9 cut(s)	486, 534, 558, 582, 630, 654, 702, 726, 935
MseI	TTAA	4 cut(s)	834, 1098, 1257, 1265
MspA1I	CMGCKG	1 cut(s)	1439
MspI	CCGG	2 cut(s)	1007, 1114
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	1537
MwoI	GCNNNNNNNGC	3 cut(s)	1149, 1421, 1517
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	1 cut(s)	797
NlaIV	GGNNCC	2 cut(s)	336, 738
NmuCI	GTSAC	2 cut(s)	436, 1201
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	974
PaqCI	CACCTGC	1 cut(s)	1148
PdmI	GAANNNNTTC	9 cut(s)	486, 534, 558, 582, 630, 654, 702, 726, 935
PfeI	GAWTC	3 cut(s)	349, 787, 921
PflMI	CCANNNNNTGG	2 cut(s)	514, 610
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	334
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	28
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	2 cut(s)	336, 738
PspPI	GGNCC	2 cut(s)	334, 1048
PspPPI	RGGWCCY	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	1357
PvuII	CAGCTG	1 cut(s)	1439
RsaI	GTAC	3 cut(s)	234, 1003, 1169
RsaNI	GTAC	3 cut(s)	233, 1002, 1168
SaqAI	TTAA	4 cut(s)	834, 1098, 1257, 1265
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	2 cut(s)	334, 1048
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	1113
SfaNI	GCATC	5 cut(s)	463, 487, 559, 655, 874
SfcI	CTRYAG	1 cut(s)	1353
SfuI	TTCGAA	1 cut(s)	974
SinI	GGWCC	1 cut(s)	334
Sse9I	AATT	9 cut(s)	163, 509, 605, 678, 830, 1065, 1159, 1389, 1555
SsiI	CCGC	2 cut(s)	401, 906
SspI	AATATT	2 cut(s)	58, 1545
SspMI	CTAG	2 cut(s)	123, 1317
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	122, 1529
TaaI	ACNGT	4 cut(s)	118, 220, 317, 1023
TaiI	ACGT	2 cut(s)	93, 1098
TaqI	TCGA	3 cut(s)	330, 420, 974
TasI	AATT	9 cut(s)	163, 509, 605, 678, 830, 1065, 1159, 1389, 1555
TatI	WGTACW	2 cut(s)	232, 1167
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	3 cut(s)	349, 787, 921
Tru1I	TTAA	4 cut(s)	834, 1098, 1257, 1265
Tru9I	TTAA	4 cut(s)	834, 1098, 1257, 1265
TscAI	CASTG	5 cut(s)	322, 445, 1028, 1087, 1339
TseFI	GTSAC	2 cut(s)	436, 1201
TseI	GCWGC	9 cut(s)	224, 302, 476, 548, 572, 644, 1352, 1436, 1439
Tsp45I	GTSAC	2 cut(s)	436, 1201
TspDTI	ATGAA	4 cut(s)	129, 909, 998, 1521
TspGWI	ACGGA	2 cut(s)	93, 1077
TspRI	CASTG	5 cut(s)	322, 445, 1028, 1087, 1339
Van91I	CCANNNNNTGG	2 cut(s)	514, 610
VpaK11BI	GGWCC	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	1153
XapI	RAATTY	4 cut(s)	830, 1159, 1389, 1555
XceI	RCATGY	1 cut(s)	797
XmaJI	CCTAGG	1 cut(s)	122
XmnI	GAANNNNTTC	9 cut(s)	486, 534, 558, 582, 630, 654, 702, 726, 935
XspI	CTAG	2 cut(s)	123, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.