RLG00000000823

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000914
Physical Location & Seq
Forward (+)
5976277 .. 5977959
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000823

Sequence Viewer

Length: 306 bp
ATGGAGGTTGGTAAGGTGAAGAGGACGCCATTTTGGAACTTGATTGAAGCTTATGATAAGGGATTGATGACTAAGAACACAGCTGCAAAATCATATCGAGAGATGCATAGGTTAGTGCAATGCTACAAGCCAGCTTTGAAGAAATTTAAGTTTGGAAACAAGTTGGCAGAAATAAGTGTATCGGACGTGCAATACATTTTGGGTTTGCCAAACCGAAAATCAGCTATCACGGTGCCAAACCCAATAGATGATCCTAAGAAGCCAACTGATCATCCTCTTGTTCGAAGGTTCTTTCCAAATGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

9.85

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AclWI GGATC 1 cut(s) 245
AcsI RAATTY 1 cut(s) 143
AcyI GRCGYC 1 cut(s) 26
AgsI TTSAA 2 cut(s) 47, 139
AjiI CACGTC 1 cut(s) 187
AluBI AGCT 4 cut(s) 50, 83, 134, 224
AluI AGCT 4 cut(s) 50, 83, 134, 224
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 28
AsuII TTCGAA 1 cut(s) 283
BanI GGYRCC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 70
BclI TGATCA 1 cut(s) 268
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 1 cut(s) 93
Bpu14I TTCGAA 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 125
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 125
BseXI GCAGC 1 cut(s) 70
BshNI GGYRCC 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 283
Bsp143I GATC 2 cut(s) 250, 268
BspLI GGNNCC 1 cut(s) 234
BspPI GGATC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 283
BspT107I GGYRCC 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 125
BssMI GATC 2 cut(s) 250, 268
BssNI GRCGYC 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 72, 255
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 2 cut(s) 253, 271
BstMBI GATC 2 cut(s) 250, 268
BstV1I GCAGC 1 cut(s) 70
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 132
CseI GACGC 1 cut(s) 34
CviJI RGCY 6 cut(s) 50, 83, 130, 134, 224, 262
CviKI_1 RGCY 6 cut(s) 50, 83, 130, 134, 224, 262
DdeI CTNAG 2 cut(s) 72, 255
DpnI GATC 2 cut(s) 252, 270
DpnII GATC 2 cut(s) 250, 268
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 108
FaiI YATR 3 cut(s) 54, 94, 108
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 84
HgaI GACGC 1 cut(s) 34
Hin1I GRCGYC 1 cut(s) 26
HindIII AAGCTT 1 cut(s) 48
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 86, 106, 118, 190
HpyF3I CTNAG 2 cut(s) 72, 255
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 250, 268
LpnPI CCDG 1 cut(s) 144
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 93
MaeII ACGT 1 cut(s) 186
MalI GATC 2 cut(s) 252, 270
MboI GATC 2 cut(s) 250, 268
MboII GAAGA 2 cut(s) 31, 151
MluCI AATT 1 cut(s) 143
MnlI CCTC 2 cut(s) 15, 285
Mph1103I ATGCAT 1 cut(s) 108
MseI TTAA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 83
NdeII GATC 2 cut(s) 250, 268
NlaIV GGNNCC 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 108
NspV TTCGAA 1 cut(s) 283
PkrI GCNGC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 234
PvuII CAGCTG 1 cut(s) 83
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 2 cut(s) 250, 268
SetI ASST 9 cut(s) 9, 18, 52, 85, 113, 136, 189, 226, 290
SfaNI GCATC 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 283
SgeI CNNG 8 cut(s) 52, 110, 139, 143, 172, 199, 241, 290
Sse9I AATT 1 cut(s) 143
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 97, 283
TasI AATT 1 cut(s) 143
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TseI GCWGC 1 cut(s) 83
XapI RAATTY 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.