Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

18736277 .. 18740565

Gene Structure 4289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG169600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAGGAGATATAACTGGGCAAGAGCTGTTAGAGACTATTTGTTATTGTGTTTGCAAGCTGCCACAACGGGAAAAGCAAGGCAAATCAGTGGGTGTGTAGCATTAATCCCGTATTGGATATGCGAGAGGAGTACTATGCTTGTTGAAATTAAAGGCAGAGAAGCAATGACTCCAGGGTGCGTCAAGTGGAGTCTCCCTCAATTCACAAAAGAATTGCAGAAAATGCAAGTTGATGACATAGAGATTGATAATGCAGTTGCCGACAACAATAGAAGCAAACATGGCAAGGAAAACAGTGACGATGACTTTGAGAACCCTCCATCAAAGCATGCTGCTACTGCACAGGCAAAGGGGCAGAAAAGACAAAGAGAAGAAAAGAAGGCCACAGTAGCTGCCAAAAAACCAGCCAAAAAGCGGGTGGCCGAAAAGAGAGCAAAAAGTAAAGAAAATAAGATCTCGAATGAGGGTGCTACTGCACCAGCTGAAAAGGAAAAACGTAGAAATGAAGAAGAGACAGCTGATAATGAATCAGAAGGTTTCGAAGATGAACATGAAGACATGACATTAAGAGATTGGGTGGATATGAACAGCATGAATTTTGCGAAAAAGATTGACGAGAATAAAGGAGAGGAAGGAATGCAAACAAAAACCACAAGTGGAGTAAATGTCAATGACATGGATTTGGGTGCAACTGAGGAAGAAGAGAACCATAGGAACTTGGATACCTGCCATTCAAATTGTCCTTTAGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

251

Amino Acids

28.41

Weight (kDa)

5.72

Isoelectric Point (pI)

43.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
AciI	CCGC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	595
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	146, 735
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	5 cut(s)	26, 59, 392, 482, 518
AluI	AGCT	5 cut(s)	26, 59, 392, 482, 518
Alw26I	GTCTC	3 cut(s)	27, 197, 506
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	381, 420
ApeKI	GCWGC	3 cut(s)	59, 332, 392
ApoI	RAATTY	1 cut(s)	595
ArsI	GACNNNNNNTTYG	2 cut(s)	290, 322
AseI	ATTAAT	1 cut(s)	104
AsuII	TTCGAA	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	3 cut(s)	46, 319, 379
BccI	CCATC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	174
BciVI	GTATCC	1 cut(s)	715
BcoDI	GTCTC	3 cut(s)	27, 197, 506
BfuAI	ACCTGC	1 cut(s)	734
BfuI	GTATCC	1 cut(s)	715
BglII	AGATCT	1 cut(s)	453
BisI	GCNGC	3 cut(s)	60, 333, 393
BlsI	GCNGC	3 cut(s)	61, 334, 394
BmcAI	AGTACT	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	739
BmuI	ACTGGG	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	540
BsaJI	CCNNGG	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	20
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	19, 142
BseXI	GCAGC	3 cut(s)	46, 319, 379
BsgI	GTGCAG	2 cut(s)	324, 459
BshFI	GGCC	2 cut(s)	383, 422
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	3 cut(s)	27, 197, 506
BsmI	GAATGC	1 cut(s)	642
BsnI	GGCC	2 cut(s)	383, 422
Bsp119I	TTCGAA	1 cut(s)	540
Bsp143I	GATC	1 cut(s)	453
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	2 cut(s)	383, 422
BspCNI	CTCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	734
BspT104I	TTCGAA	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	2 cut(s)	296, 388
Bst6I	CTCTTC	2 cut(s)	504, 696
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	57, 330
BstDEI	CTNAG	1 cut(s)	693
BstKTI	GATC	1 cut(s)	456
BstMAI	GTCTC	3 cut(s)	27, 197, 506
BstMBI	GATC	1 cut(s)	453
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 282, 338, 389
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	46, 319, 379
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	383, 422
BtsIMutI	CAGTG	2 cut(s)	94, 301
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	2 cut(s)	57, 330
CaiI	CAGNNNCTG	1 cut(s)	392
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	6 cut(s)	281, 329, 551, 559, 592, 676
CviJI	RGCY	8 cut(s)	26, 59, 383, 392, 407, 422, 482, 518
CviKI_1	RGCY	8 cut(s)	26, 59, 383, 392, 407, 422, 482, 518
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	1 cut(s)	455
DpnII	GATC	1 cut(s)	453
EaeI	YGGCCR	1 cut(s)	420
Eam1104I	CTCTTC	2 cut(s)	504, 696
EarI	CTCTTC	2 cut(s)	504, 696
EcoRII	CCWGG	1 cut(s)	172
FaeI	CATG	6 cut(s)	284, 332, 554, 562, 595, 679
FatI	CATG	6 cut(s)	280, 328, 550, 558, 591, 675
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	3 cut(s)	60, 333, 393
Fsp4HI	GCNGC	3 cut(s)	60, 333, 393
GluI	GCNGC	3 cut(s)	60, 333, 393
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	383, 422
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	6 cut(s)	284, 332, 554, 562, 595, 679
HinfI	GANTC	3 cut(s)	169, 190, 527
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	373, 527, 626
HpyCH4III	ACNGT	2 cut(s)	296, 388
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	8 cut(s)	55, 217, 226, 254, 341, 476, 640, 689
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 282, 338, 389
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	6 cut(s)	284, 332, 554, 562, 595, 679
Kzo9I	GATC	1 cut(s)	453
LpnPI	CCDG	6 cut(s)	159, 186, 329, 417, 492, 739
Lsp1109I	GCAGC	3 cut(s)	46, 319, 379
LweI	GCATC	1 cut(s)	739
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	455
MboI	GATC	1 cut(s)	453
MboII	GAAGA	7 cut(s)	383, 518, 521, 554, 566, 710, 713
MflI	RGATCY	1 cut(s)	453
MluCI	AATT	5 cut(s)	147, 200, 212, 595, 736
MlyI	GAGTC	2 cut(s)	163, 199
MnlI	CCTC	6 cut(s)	120, 207, 327, 457, 622, 688
MseI	TTAA	3 cut(s)	104, 150, 566
MspA1I	CMGCKG	2 cut(s)	482, 518
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	4 cut(s)	223, 282, 338, 389
NdeII	GATC	1 cut(s)	453
NlaIII	CATG	6 cut(s)	284, 332, 554, 562, 595, 679
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	1 cut(s)	332
NspV	TTCGAA	1 cut(s)	540
PaeI	GCATGC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	3 cut(s)	61, 334, 394
PleI	GAGTC	2 cut(s)	163, 198
PpsI	GAGTC	2 cut(s)	163, 198
PshBI	ATTAAT	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	453
PvuII	CAGCTG	2 cut(s)	482, 518
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	104, 150, 566
SatI	GCNGC	3 cut(s)	60, 333, 393
Sau3AI	GATC	1 cut(s)	453
ScaI	AGTACT	1 cut(s)	133
SchI	GAGTC	2 cut(s)	163, 199
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	8 cut(s)	28, 61, 394, 484, 499, 520, 538, 728
SfaNI	GCATC	1 cut(s)	739
SfuI	TTCGAA	1 cut(s)	540
SphI	GCATGC	1 cut(s)	332
Sse9I	AATT	5 cut(s)	147, 200, 212, 595, 736
SsiI	CCGC	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	296, 388
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	458, 540
TasI	AATT	5 cut(s)	147, 200, 212, 595, 736
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	3 cut(s)	104, 150, 566
Tru9I	TTAA	3 cut(s)	104, 150, 566
TscAI	CASTG	2 cut(s)	94, 301
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	3 cut(s)	59, 332, 392
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	6 cut(s)	519, 540, 561, 567, 599, 608
TspRI	CASTG	2 cut(s)	94, 301
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	1 cut(s)	595
XceI	RCATGY	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
ZrmI	AGTACT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.