Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000830.1

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

311991 .. 313034

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000830.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

atgcaagttgatgacatagaggtgatggatacgctactatctgctactatatatgcttatgctactgtgcaatatgctactaacttgaaaaatattttattgcagattgataatgcagttgccgacaacaatagaagcaaacatggcaaggaaaacagtgacgatgactttgagaaccctccatcaaagcatgctgctactgcacaggcaaaggggcagaaaagacaaagagaagaaaagaaggccacagtagctgccaaaaaaccagccataaagtgggtggcaaaaaagagagcaaaaagtaaagaaaataagatctcgaatgagggtttttttttgaattatcattttcttttggttaaggatgctgcggatggtattagagatgactttagctttgacactggatttggggggcaggaaaatgaaacaaactttgtcgatcaggatcgggatggaactgaaggaggagaaccagatcaaatggaaaggaatgaaaaagctgctactgaggctgatgatgttgaaaggaacaaaaaagctgctactgaggccgatgcaaattttatggatcaaaccctgaaaaatattatagaagagattgtgaatgaagctgcaaggaaagaaaaagctgctactggggccgatgaagctgcaaggaatgacaaagctgctactgaggctggtgcaaatattgcggatcaaatcttgaacaacattgtagaagagattttgaatgaagagtacaagagcaggaatggtccagtttggttcgatgaatgggaagccttgttgcaaagtgagtacgacgaatttggctatccaagcactgatgaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

31.31

Weight (kDa)

4.59

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	2 cut(s)	371, 698
AclWI	GGATC	3 cut(s)	456, 579, 708
AcsI	RAATTY	2 cut(s)	562, 812
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	2 cut(s)	746, 806
AfiI	CCNNNNNNNGG	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	88, 340, 527, 712, 736
AluBI	AGCT	8 cut(s)	254, 396, 503, 542, 614, 632, 653, 671
AluI	AGCT	8 cut(s)	254, 396, 503, 542, 614, 632, 653, 671
AlwI	GGATC	3 cut(s)	456, 579, 708
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	243, 552, 642
ApeKI	GCWGC	9 cut(s)	194, 254, 368, 503, 542, 614, 632, 653, 671
ApoI	RAATTY	2 cut(s)	562, 812
ArsI	GACNNNNNNTTYG	6 cut(s)	152, 184, 380, 392, 412, 424
AspS9I	GGNCC	2 cut(s)	642, 761
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	761
BbvI	GCAGC	9 cut(s)	181, 241, 355, 490, 529, 601, 619, 640, 658
BccI	CCATC	4 cut(s)	19, 190, 368, 449
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciVI	GTATCC	1 cut(s)	22
BfuI	GTATCC	1 cut(s)	22
BglII	AGATCT	1 cut(s)	315
BisI	GCNGC	9 cut(s)	195, 255, 369, 504, 543, 615, 633, 654, 672
BlsI	GCNGC	9 cut(s)	196, 256, 370, 505, 544, 616, 634, 655, 673
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	642, 761
BmiI	GGNNCC	1 cut(s)	643
BmrI	ACTGGG	1 cut(s)	648
BmsI	GCATC	2 cut(s)	355, 547
BmuI	ACTGGG	1 cut(s)	648
BsaBI	GATNNNNATC	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	1 cut(s)	276
Bse1I	ACTGG	3 cut(s)	409, 643, 764
Bse8I	GATNNNNATC	1 cut(s)	447
BseGI	GGATG	3 cut(s)	370, 379, 460
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	276
BseMII	CTCAG	3 cut(s)	501, 540, 669
BseNI	ACTGG	3 cut(s)	409, 643, 764
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	9 cut(s)	181, 241, 355, 490, 529, 601, 619, 640, 658
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	245, 554, 644
BslI	CCNNNNNNNGG	1 cut(s)	276
BsnI	GGCC	3 cut(s)	245, 554, 644
Bsp143I	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
BspACI	CCGC	2 cut(s)	371, 698
BspANI	GGCC	3 cut(s)	245, 554, 644
BspCNI	CTCAG	3 cut(s)	502, 541, 670
BspLI	GGNNCC	1 cut(s)	643
BspPI	GGATC	3 cut(s)	456, 579, 708
BsrI	ACTGG	3 cut(s)	409, 643, 764
BssMI	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
Bst4CI	ACNGT	3 cut(s)	67, 158, 250
Bst6I	CTCTTC	3 cut(s)	591, 720, 735
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	510, 549, 678
BstF5I	GGATG	3 cut(s)	370, 379, 460
BstKTI	GATC	6 cut(s)	318, 445, 451, 481, 574, 703
BstMBI	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
BstNSI	RCATGY	1 cut(s)	194
BstV1I	GCAGC	9 cut(s)	181, 241, 355, 490, 529, 601, 619, 640, 658
BstX2I	RGATCY	1 cut(s)	315
BstYI	RGATCY	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	245, 554, 644
BtsCI	GGATG	3 cut(s)	370, 379, 460
BtsIMutI	CAGTG	3 cut(s)	163, 402, 828
Cac8I	GCNNGC	1 cut(s)	192
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	642, 761
Csp6I	GTAC	2 cut(s)	745, 805
CviAII	CATG	2 cut(s)	143, 191
CviQI	GTAC	2 cut(s)	745, 805
DdeI	CTNAG	3 cut(s)	510, 549, 678
DpnI	GATC	6 cut(s)	317, 444, 450, 480, 573, 702
DpnII	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
Eam1104I	CTCTTC	3 cut(s)	591, 720, 735
EarI	CTCTTC	3 cut(s)	591, 720, 735
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	483
FaeI	CATG	2 cut(s)	146, 194
FatI	CATG	2 cut(s)	142, 190
Fnu4HI	GCNGC	9 cut(s)	195, 255, 369, 504, 543, 615, 633, 654, 672
FokI	GGATG	3 cut(s)	377, 386, 467
Fsp4HI	GCNGC	9 cut(s)	195, 255, 369, 504, 543, 615, 633, 654, 672
GluI	GCNGC	9 cut(s)	195, 255, 369, 504, 543, 615, 633, 654, 672
HaeIII	GGCC	3 cut(s)	245, 554, 644
Hin1II	CATG	2 cut(s)	146, 194
HphI	GGTGA	1 cut(s)	34
Hpy188III	TCNNGA	4 cut(s)	319, 446, 452, 709
Hpy99I	CGWCG	1 cut(s)	812
HpyAV	CCTTC	2 cut(s)	235, 458
HpyCH4III	ACNGT	3 cut(s)	67, 158, 250
HpyF3I	CTNAG	3 cut(s)	510, 549, 678
Hsp92II	CATG	2 cut(s)	146, 194
Kzo9I	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
Lsp1109I	GCAGC	9 cut(s)	181, 241, 355, 490, 529, 601, 619, 640, 658
LweI	GCATC	2 cut(s)	355, 547
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	6 cut(s)	317, 444, 450, 480, 573, 702
MboI	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
MboII	GAAGA	4 cut(s)	245, 608, 737, 752
MflI	RGATCY	1 cut(s)	315
MluCI	AATT	3 cut(s)	340, 562, 812
MnlI	CCTC	7 cut(s)	13, 189, 319, 461, 505, 544, 673
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	20
NdeII	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
NlaIII	CATG	2 cut(s)	146, 194
NlaIV	GGNNCC	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	9 cut(s)	196, 256, 370, 505, 544, 616, 634, 655, 673
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	2 cut(s)	642, 761
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	315
RsaI	GTAC	2 cut(s)	746, 806
RsaNI	GTAC	2 cut(s)	745, 805
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	9 cut(s)	195, 255, 369, 504, 543, 615, 633, 654, 672
Sau3AI	GATC	6 cut(s)	315, 442, 448, 478, 571, 700
Sau96I	GGNCC	2 cut(s)	642, 761
SetI	ASST	9 cut(s)	24, 256, 398, 505, 544, 616, 634, 655, 673
SfaNI	GCATC	2 cut(s)	355, 547
SinI	GGWCC	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	20
SphI	GCATGC	1 cut(s)	194
Sse9I	AATT	3 cut(s)	340, 562, 812
SsiI	CCGC	2 cut(s)	371, 698
SspI	AATATT	3 cut(s)	94, 589, 694
TaaI	ACNGT	3 cut(s)	67, 158, 250
TaqI	TCGA	3 cut(s)	320, 441, 774
TasI	AATT	3 cut(s)	340, 562, 812
TatI	WGTACW	1 cut(s)	744
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TscAI	CASTG	3 cut(s)	163, 409, 835
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	9 cut(s)	194, 254, 368, 503, 542, 614, 632, 653, 671
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	441, 510, 624, 663, 753, 792
TspRI	CASTG	3 cut(s)	163, 409, 835
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	562, 812
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	2 cut(s)	273, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.