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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 292 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 123 |
| AgsI | TTSAA | 2 cut(s) | 305, 469 |
| AjnI | CCWGG | 1 cut(s) | 331 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 21, 53 |
| AluBI | AGCT | 6 cut(s) | 6, 35, 105, 129, 185, 218 |
| AluI | AGCT | 6 cut(s) | 6, 35, 105, 129, 185, 218 |
| Alw26I | GTCTC | 2 cut(s) | 149, 356 |
| Ama87I | CYCGRG | 1 cut(s) | 106 |
| ApeKI | GCWGC | 1 cut(s) | 218 |
| AseI | ATTAAT | 1 cut(s) | 263 |
| AsuHPI | GGTGA | 1 cut(s) | 415 |
| AvaI | CYCGRG | 1 cut(s) | 106 |
| AxyI | CCTNAGG | 1 cut(s) | 118 |
| BaeGI | GKGCMC | 1 cut(s) | 181 |
| BbvI | GCAGC | 1 cut(s) | 205 |
| BccI | CCATC | 2 cut(s) | 117, 400 |
| BciT130I | CCWGG | 1 cut(s) | 333 |
| BciVI | GTATCC | 1 cut(s) | 403 |
| BcoDI | GTCTC | 2 cut(s) | 149, 356 |
| BfuI | GTATCC | 1 cut(s) | 403 |
| BisI | GCNGC | 1 cut(s) | 219 |
| BlsI | GCNGC | 1 cut(s) | 220 |
| BmcAI | AGTACT | 1 cut(s) | 292 |
| Bme1390I | CCNGG | 1 cut(s) | 333 |
| BmeT110I | CYCGRG | 1 cut(s) | 106 |
| BmrFI | CCNGG | 1 cut(s) | 333 |
| BmsI | GCATC | 1 cut(s) | 150 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 340, 372 |
| BpmI | CTGGAG | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 1 cut(s) | 332 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 123 |
| Bse21I | CCTNAGG | 1 cut(s) | 118 |
| Bse3DI | GCAATG | 1 cut(s) | 330 |
| BseBI | CCWGG | 1 cut(s) | 333 |
| BseDI | CCNNGG | 1 cut(s) | 332 |
| BseGI | GGATG | 2 cut(s) | 128, 257 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BseMI | GCAATG | 1 cut(s) | 330 |
| BseRI | GAGGAG | 1 cut(s) | 301 |
| BseSI | GKGCMC | 1 cut(s) | 181 |
| BseXI | GCAGC | 1 cut(s) | 205 |
| BsiHKCI | CYCGRG | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 123 |
| BsmAI | GTCTC | 2 cut(s) | 149, 356 |
| BsoBI | CYCGRG | 1 cut(s) | 106 |
| Bsp1286I | GDGCHC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 330 |
| BssECI | CCNNGG | 1 cut(s) | 332 |
| Bst2UI | CCWGG | 1 cut(s) | 333 |
| Bst4CI | ACNGT | 4 cut(s) | 96, 420, 448, 539 |
| Bst6I | CTCTTC | 1 cut(s) | 158 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 382 |
| BstC8I | GCNNGC | 2 cut(s) | 103, 216 |
| BstDEI | CTNAG | 1 cut(s) | 118 |
| BstF5I | GGATG | 2 cut(s) | 128, 257 |
| BstMAI | GTCTC | 2 cut(s) | 149, 356 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 382, 525 |
| BstNI | CCWGG | 1 cut(s) | 333 |
| BstSCI | CCNGG | 1 cut(s) | 331 |
| BstSLI | GKGCMC | 1 cut(s) | 181 |
| BstV1I | GCAGC | 1 cut(s) | 205 |
| Bsu36I | CCTNAGG | 1 cut(s) | 118 |
| BsuI | GTATCC | 1 cut(s) | 403 |
| BtsCI | GGATG | 2 cut(s) | 128, 257 |
| Cac8I | GCNNGC | 2 cut(s) | 103, 216 |
| CseI | GACGC | 1 cut(s) | 328 |
| Csp6I | GTAC | 1 cut(s) | 291 |
| CviAII | CATG | 2 cut(s) | 55, 524 |
| CviJI | RGCY | 6 cut(s) | 6, 35, 105, 129, 185, 218 |
| CviKI_1 | RGCY | 6 cut(s) | 6, 35, 105, 129, 185, 218 |
| CviQI | GTAC | 1 cut(s) | 291 |
| DdeI | CTNAG | 1 cut(s) | 118 |
| Eam1104I | CTCTTC | 1 cut(s) | 158 |
| EarI | CTCTTC | 1 cut(s) | 158 |
| Eco32I | GATATC | 1 cut(s) | 279 |
| Eco81I | CCTNAGG | 1 cut(s) | 118 |
| Eco88I | CYCGRG | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 331 |
| EcoRV | GATATC | 1 cut(s) | 279 |
| EcoT22I | ATGCAT | 1 cut(s) | 143 |
| FaeI | CATG | 2 cut(s) | 58, 527 |
| FatI | CATG | 2 cut(s) | 54, 523 |
| Fnu4HI | GCNGC | 1 cut(s) | 219 |
| FokI | GGATG | 2 cut(s) | 135, 264 |
| Fsp4HI | GCNGC | 1 cut(s) | 219 |
| GluI | GCNGC | 1 cut(s) | 219 |
| GsuI | CTGGAG | 1 cut(s) | 315 |
| HgaI | GACGC | 1 cut(s) | 328 |
| Hin1II | CATG | 2 cut(s) | 58, 527 |
| HincII | GTYRAC | 1 cut(s) | 114 |
| HindII | GTYRAC | 1 cut(s) | 114 |
| HinfI | GANTC | 2 cut(s) | 328, 349 |
| HphI | GGTGA | 1 cut(s) | 415 |
| Hpy166II | GTNNAC | 1 cut(s) | 114 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 114 |
| HpyCH4III | ACNGT | 4 cut(s) | 96, 420, 448, 539 |
| HpyCH4V | TGCA | 8 cut(s) | 101, 141, 214, 376, 385, 451, 484, 497 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 382, 525 |
| HpyF3I | CTNAG | 1 cut(s) | 118 |
| Hsp92II | CATG | 2 cut(s) | 58, 527 |
| LmnI | GCTCC | 1 cut(s) | 126 |
| LpnPI | CCDG | 2 cut(s) | 318, 345 |
| Lsp1109I | GCAGC | 1 cut(s) | 205 |
| LweI | GCATC | 1 cut(s) | 150 |
| MaeIII | GTNAC | 2 cut(s) | 85, 256 |
| MboII | GAAGA | 1 cut(s) | 175 |
| MhlI | GDGCHC | 1 cut(s) | 181 |
| MluCI | AATT | 5 cut(s) | 172, 306, 359, 371, 557 |
| MlyI | GAGTC | 2 cut(s) | 322, 358 |
| MnlI | CCTC | 3 cut(s) | 279, 366, 394 |
| Mph1103I | ATGCAT | 1 cut(s) | 143 |
| MseI | TTAA | 3 cut(s) | 23, 263, 309 |
| MspR9I | CCNGG | 1 cut(s) | 333 |
| MvaI | CCWGG | 1 cut(s) | 333 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 382, 525 |
| NlaIII | CATG | 2 cut(s) | 58, 527 |
| NmuCI | GTSAC | 1 cut(s) | 85 |
| NsiI | ATGCAT | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 220 |
| PleI | GAGTC | 2 cut(s) | 322, 357 |
| PpsI | GAGTC | 2 cut(s) | 322, 357 |
| PshBI | ATTAAT | 1 cut(s) | 263 |
| Psp6I | CCWGG | 1 cut(s) | 331 |
| PspGI | CCWGG | 1 cut(s) | 331 |
| RsaI | GTAC | 1 cut(s) | 292 |
| RsaNI | GTAC | 1 cut(s) | 291 |
| SaqAI | TTAA | 3 cut(s) | 23, 263, 309 |
| SatI | GCNGC | 1 cut(s) | 219 |
| ScaI | AGTACT | 1 cut(s) | 292 |
| SchI | GAGTC | 2 cut(s) | 322, 358 |
| ScrFI | CCNGG | 1 cut(s) | 333 |
| SduI | GDGCHC | 1 cut(s) | 181 |
| SetI | ASST | 8 cut(s) | 8, 37, 107, 119, 131, 187, 220, 405 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| Sse9I | AATT | 5 cut(s) | 172, 306, 359, 371, 557 |
| StyD4I | CCNGG | 1 cut(s) | 331 |
| TaaI | ACNGT | 4 cut(s) | 96, 420, 448, 539 |
| TasI | AATT | 5 cut(s) | 172, 306, 359, 371, 557 |
| TatI | WGTACW | 1 cut(s) | 290 |
| Tru1I | TTAA | 3 cut(s) | 23, 263, 309 |
| Tru9I | TTAA | 3 cut(s) | 23, 263, 309 |
| TseFI | GTSAC | 1 cut(s) | 85 |
| TseI | GCWGC | 1 cut(s) | 218 |
| Tsp45I | GTSAC | 1 cut(s) | 85 |
| TspDTI | ATGAA | 2 cut(s) | 176, 408 |
| TspGWI | ACGGA | 1 cut(s) | 161 |
| VspI | ATTAAT | 1 cut(s) | 263 |
| ZrmI | AGTACT | 1 cut(s) | 292 |
| Zsp2I | ATGCAT | 1 cut(s) | 143 |