Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Forward (+)

15502760 .. 15504103

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11772.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGTGACTAAGAAGGGTGCTACTGCACAAGCCGAAGAGGGTGCTTTTGTGGTGGCTGAGAAGGGAGCTAGTGCGCAAACCGAAGAGGGTGCTTCTGTGGTGGCTGAGAAGGGTGGTCCTACAGAATCTGAAGAGGATGCTCATGTGGTGTCTGAGAAGGGAGATGGTGCGCAAACCAAAGAGGGTGCTAGTGTACAACTTGAAGAAGGTGCTACTGCACAAGCCGAAAAGGGTACTCCTGTGGTGGCTGAGAAGGGTGCTACTGCACAAGCCGTAGAGGGTTCTAGTGGACAAGCCGAAGAGGGTGCTACTTCAGAAGCTGAAGAGGATACTCGTGAAGGCCTTGAATCATTTGACATGACATTACATGGTTGGCTGGAAGGGAATGAAAAAGTTGCTGCTGTGGACGATGAAGGTGAAACATATGAAGAAGCAACAGCAAACACGGAAGAGATTTTGAAGAAGTTTTTCAATAAAGATAAGGATGCGAATCAAGGAGGAGGACATGAAGAGTTTGCGAGTGAGAAAATGTATGATCCGGAGGACTTCAGGTTGTATGAAGAGTTTGTTGAAAAGGAGTCTAGGGAATTTCCAAAAGCAACTAGTGATGAGGAGTTGGAATACTGGCAAGGTTTGGCCAAAGTAAGGGGAGAAATGGTGGCGAGTGCAATATATAGCTGCAAATCAAAGAATGACTCCTATGTGCGGCTTTGGGATGAAAAAGAAGAATTGAAGAGAAATAACAAAAAGTTGAAGAAAAAACTGGAGCAGAAAAATGATTACATAAAAAAGTTGGAATACAAGTATAAACTGTTGTTGCTAGGACAAAAGGGAGAAACGAGTGAGGTTGGTGTTACAACTCAGATTGAAGGAGGTTCAGATGGAAATGATGTAGAAGGTTTAGGAGCGGAAAAGGTTGCTACTGCAGAGGGAGAAGAAGGTTCAGCTGAAAATGTTGCTACTGCAGGGGAAGAAGAAGGTTTAGTTGGAAATGTAGAAGGTGCAGGGGAAGAAGGTTGTTCAGATGTAGGAGGTGCAGCTGAAAGAGAAGGACCGAGGACACGTTCAGTTGTAAGAAGGATCAAAGCAAGGACCGACCGGAAAGAGAAGAAGATGGAAGATTTTGAGGTCCAGATTCCCTTAAAGAGACAAAGGAAGAAGCGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

390

Amino Acids

42.32

Weight (kDa)

4.67

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	75, 171
AccBSI	CCGCTC	1 cut(s)	908
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	2 cut(s)	706, 908
AclWI	GGATC	2 cut(s)	530, 1088
AcoI	YGGCCR	1 cut(s)	636
AcsI	RAATTY	1 cut(s)	587
AcuI	CTGAAG	4 cut(s)	150, 297, 342, 532
AfaI	GTAC	2 cut(s)	195, 235
AfiI	CCNNNNNNNGG	2 cut(s)	645, 705
AflIII	ACRYGT	1 cut(s)	1061
AgsI	TTSAA	8 cut(s)	203, 347, 460, 472, 572, 733, 754, 869
AhlI	ACTAGT	1 cut(s)	602
AjuI	GAANNNNNNNTTGG	2 cut(s)	969, 1001
AluBI	AGCT	5 cut(s)	68, 320, 678, 947, 1040
AluI	AGCT	5 cut(s)	68, 320, 678, 947, 1040
Alw26I	GTCTC	1 cut(s)	1141
AlwI	GGATC	2 cut(s)	530, 1088
AlwNI	CAGNNNCTG	2 cut(s)	128, 320
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	2 cut(s)	340, 636
ApeKI	GCWGC	3 cut(s)	398, 678, 1037
ApoI	RAATTY	1 cut(s)	587
Asp700I	GAANNNNTTC	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	76, 172
AspS9I	GGNCC	4 cut(s)	116, 1052, 1092, 1129
AsuHPI	GGTGA	2 cut(s)	16, 428
AvaII	GGWCC	4 cut(s)	116, 1052, 1092, 1129
BaeI	ACNNNNGTAYC	2 cut(s)	225, 258
BalI	TGGCCA	1 cut(s)	638
BauI	CACGAG	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	385, 665, 1049
BccI	CCATC	3 cut(s)	158, 875, 1108
BceAI	ACGGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	6 cut(s)	23, 57, 71, 105, 287, 321
BciVI	GTATCC	1 cut(s)	322
BcoDI	GTCTC	1 cut(s)	1141
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	6 cut(s)	69, 189, 285, 582, 603, 821
BfmI	CTRYAG	3 cut(s)	120, 924, 963
BfuI	GTATCC	1 cut(s)	322
BisI	GCNGC	4 cut(s)	399, 679, 707, 1038
BlsI	GCNGC	4 cut(s)	400, 680, 708, 1039
Bme18I	GGWCC	4 cut(s)	116, 1052, 1092, 1129
BmgT120I	GGNCC	4 cut(s)	116, 1052, 1092, 1129
BmsI	GCATC	2 cut(s)	127, 475
BpmI	CTGGAG	1 cut(s)	785
BsaBI	GATNNNNATC	1 cut(s)	489
BsaJI	CCNNGG	1 cut(s)	1055
BsaWI	WCCGGW	2 cut(s)	538, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	645, 705
Bse1I	ACTGG	2 cut(s)	629, 768
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	1 cut(s)	1055
BseGI	GGATG	3 cut(s)	142, 490, 721
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	645, 705
BseMII	CTCAG	5 cut(s)	48, 96, 144, 240, 875
BseNI	ACTGG	2 cut(s)	629, 768
BseRI	GAGGAG	2 cut(s)	513, 626
BseXI	GCAGC	3 cut(s)	385, 665, 1049
BsgI	GTGCAG	5 cut(s)	9, 201, 249, 1023, 1056
Bsh1285I	CGRYCG	1 cut(s)	1099
BshFI	GGCC	2 cut(s)	342, 638
BsiEI	CGRYCG	1 cut(s)	1099
BsiSI	CCGG	2 cut(s)	539, 1099
BslI	CCNNNNNNNGG	2 cut(s)	645, 705
BsmAI	GTCTC	1 cut(s)	1141
BsnI	GGCC	2 cut(s)	342, 638
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	193
Bsp143I	GATC	2 cut(s)	535, 1080
BspACI	CCGC	2 cut(s)	706, 908
BspANI	GGCC	2 cut(s)	342, 638
BspCNI	CTCAG	5 cut(s)	49, 97, 145, 241, 874
BspEI	TCCGGA	1 cut(s)	538
BspMAI	CTGCAG	2 cut(s)	928, 967
BspPI	GGATC	2 cut(s)	530, 1088
BsrBI	CCGCTC	1 cut(s)	908
BsrGI	TGTACA	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	629, 768
BssECI	CCNNGG	1 cut(s)	1055
BssMI	GATC	2 cut(s)	535, 1080
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	813
Bst6I	CTCTTC	9 cut(s)	30, 78, 126, 294, 318, 444, 504, 555, 728
BstAUI	TGTACA	1 cut(s)	193
BstDEI	CTNAG	6 cut(s)	9, 57, 105, 153, 249, 861
BstF5I	GGATG	3 cut(s)	142, 490, 721
BstHHI	GCGC	2 cut(s)	76, 172
BstKTI	GATC	2 cut(s)	538, 1083
BstMAI	GTCTC	1 cut(s)	1141
BstMBI	GATC	2 cut(s)	535, 1080
BstMCI	CGRYCG	1 cut(s)	1099
BstSFI	CTRYAG	3 cut(s)	120, 924, 963
BstV1I	GCAGC	3 cut(s)	385, 665, 1049
BsuI	GTATCC	1 cut(s)	322
BsuRI	GGCC	2 cut(s)	342, 638
BtsCI	GGATG	3 cut(s)	142, 490, 721
CaiI	CAGNNNCTG	2 cut(s)	128, 320
CfoI	GCGC	2 cut(s)	76, 172
Cfr13I	GGNCC	4 cut(s)	116, 1052, 1092, 1129
Csp6I	GTAC	2 cut(s)	194, 234
CviAII	CATG	4 cut(s)	143, 358, 368, 506
CviQI	GTAC	2 cut(s)	194, 234
DdeI	CTNAG	6 cut(s)	9, 57, 105, 153, 249, 861
DpnI	GATC	2 cut(s)	537, 1082
DpnII	GATC	2 cut(s)	535, 1080
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	9 cut(s)	30, 78, 126, 294, 318, 444, 504, 555, 728
EarI	CTCTTC	9 cut(s)	30, 78, 126, 294, 318, 444, 504, 555, 728
Eco147I	AGGCCT	1 cut(s)	342
Eco47I	GGWCC	4 cut(s)	116, 1052, 1092, 1129
Eco57I	CTGAAG	4 cut(s)	150, 297, 342, 532
FaeI	CATG	4 cut(s)	146, 361, 371, 509
FatI	CATG	4 cut(s)	142, 357, 367, 505
FauNDI	CATATG	1 cut(s)	424
Fnu4HI	GCNGC	4 cut(s)	399, 679, 707, 1038
FokI	GGATG	3 cut(s)	149, 497, 728
Fsp4HI	GCNGC	4 cut(s)	399, 679, 707, 1038
FspBI	CTAG	6 cut(s)	69, 189, 285, 582, 603, 821
FspI	TGCGCA	2 cut(s)	75, 171
GlaI	GCGC	2 cut(s)	75, 171
GluI	GCNGC	4 cut(s)	399, 679, 707, 1038
GsuI	CTGGAG	1 cut(s)	785
HaeIII	GGCC	2 cut(s)	342, 638
HapII	CCGG	2 cut(s)	539, 1099
HhaI	GCGC	2 cut(s)	76, 172
Hin1II	CATG	4 cut(s)	146, 361, 371, 509
Hin6I	GCGC	2 cut(s)	74, 170
HinP1I	GCGC	2 cut(s)	74, 170
HinfI	GANTC	6 cut(s)	125, 347, 490, 578, 695, 1135
HpaII	CCGG	2 cut(s)	539, 1099
HphI	GGTGA	2 cut(s)	16, 428
Hpy166II	GTNNAC	3 cut(s)	194, 290, 406
Hpy188I	TCNGA	6 cut(s)	130, 154, 316, 864, 880, 1024
Hpy188III	TCNNGA	3 cut(s)	335, 539, 1132
Hpy8I	GTNNAC	3 cut(s)	194, 290, 406
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4IV	ACGT	1 cut(s)	1063
HpyCH4V	TGCA	9 cut(s)	26, 218, 266, 668, 681, 926, 965, 1004, 1037
HpyF3I	CTNAG	6 cut(s)	9, 57, 105, 153, 249, 861
HpySE526I	ACGT	1 cut(s)	1063
Hsp92II	CATG	4 cut(s)	146, 361, 371, 509
HspAI	GCGC	2 cut(s)	74, 170
Kpn2I	TCCGGA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	535, 1080
LmnI	GCTCC	3 cut(s)	65, 766, 905
Lsp1109I	GCAGC	3 cut(s)	385, 665, 1049
LweI	GCATC	2 cut(s)	127, 475
MaeI	CTAG	6 cut(s)	69, 189, 285, 582, 603, 821
MaeII	ACGT	1 cut(s)	1063
MaeIII	GTNAC	2 cut(s)	4, 853
MalI	GATC	2 cut(s)	537, 1082
MbiI	CCGCTC	1 cut(s)	908
MboI	GATC	2 cut(s)	535, 1080
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	2 cut(s)	587, 728
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	2 cut(s)	587, 689
MmeI	TCCRAC	3 cut(s)	597, 774, 967
Mox20I	TGGCCA	1 cut(s)	638
MroI	TCCGGA	1 cut(s)	538
MroXI	GAANNNNTTC	1 cut(s)	467
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	1 cut(s)	1142
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	2 cut(s)	947, 1040
MspI	CCGG	2 cut(s)	539, 1099
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	535, 1080
NlaIII	CATG	4 cut(s)	146, 361, 371, 509
NmuCI	GTSAC	1 cut(s)	4
NsbI	TGCGCA	2 cut(s)	75, 171
PceI	AGGCCT	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	125, 347, 490, 1135
PkrI	GCNGC	4 cut(s)	400, 680, 708, 1039
PleI	GAGTC	2 cut(s)	586, 689
PpsI	GAGTC	2 cut(s)	586, 689
PspPI	GGNCC	4 cut(s)	116, 1052, 1092, 1129
PstI	CTGCAG	2 cut(s)	928, 967
PstNI	CAGNNNCTG	2 cut(s)	128, 320
PvuII	CAGCTG	2 cut(s)	947, 1040
RsaI	GTAC	2 cut(s)	195, 235
RsaNI	GTAC	2 cut(s)	194, 234
SaqAI	TTAA	1 cut(s)	1142
SatI	GCNGC	4 cut(s)	399, 679, 707, 1038
Sau3AI	GATC	2 cut(s)	535, 1080
Sau96I	GGNCC	4 cut(s)	116, 1052, 1092, 1129
SchI	GAGTC	2 cut(s)	587, 689
SfaNI	GCATC	2 cut(s)	127, 475
SfcI	CTRYAG	3 cut(s)	120, 924, 963
SinI	GGWCC	4 cut(s)	116, 1052, 1092, 1129
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	2 cut(s)	587, 728
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	2 cut(s)	706, 908
SspMI	CTAG	6 cut(s)	69, 189, 285, 582, 603, 821
StuI	AGGCCT	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	813
TaiI	ACGT	1 cut(s)	1066
TaqII	GACCGA	2 cut(s)	1069, 1109
TasI	AATT	2 cut(s)	587, 728
TatI	WGTACW	1 cut(s)	193
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	4 cut(s)	125, 347, 490, 1135
Tru1I	TTAA	1 cut(s)	1142
Tru9I	TTAA	1 cut(s)	1142
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	3 cut(s)	398, 678, 1037
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	6 cut(s)	402, 426, 441, 522, 573, 732
TspGWI	ACGGA	1 cut(s)	461
VpaK11BI	GGWCC	4 cut(s)	116, 1052, 1092, 1129
XapI	RAATTY	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	6 cut(s)	69, 189, 285, 582, 603, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.