Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000914

Physical Location & Seq

Genomic Coordinates Reverse (-)

6036979 .. 6040442

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g07311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGAAGGAGCAGGGGTCTACAATGATACTAATGAGCCAAAAAGAAACAGAGGTGGCTAACGATATCCAGATTGATAATGTTGAGGATGAGACAAATGCGAAGGATAACGAACAACAAGTTGGTGACGATGACTTTGAGAACCCTCCACCAAAGAATGGTGCTACTATGCATGATGAGGTGGGAAAGAAGAAAAAAGCGAGGAAGAACTTGAAGAAGGGTGCTACTACACAAGCTGAAGAGGGTGCTTATGTGGTGGCTGAGAAGGGTGGTCCAGCAGAATTTGAAGAAGGTGCTCATGTGGTGTCTGAGAAGGGTGCTACTGCGCAAGCCGAAGAGGGTGCTTCTGTGGTGGCTGAGAAGGGTGCTCCTGCAAAATCGGAAGAAGGTGCTCATGTGGTGTCTAAGAAGGGAGCTAGTGAGCAAACCAAAGAGGGTGCTAGTGTACAAGTTGAAGAAGGTGCTACTGGACAAGTCGAAAAGGGTGCTCTTGTGGTGGCTGAGAAGGGTGCTACTACACAAGCCGTAGAGGGTTCTAGTGGACAAACCGAAGAGGGTGCTACTTCAGAAGCCGAAGAGGATATTCGTGAAGGCCTTGAATCCTTTGACATGACATTAAATGGGAATGAAAAAGCTGTTGTTGTGGATGATGAAGGTGAAACCTACGAAGAAGCAACAGCAAACACGGAAGAGATTTTGAATAAGTTTTTCAATAAAGATATGGATGCGGATCAAGGAGGAGGACATGAAGAGTTTGCGAGTGAGAAAATGTATGATCCGGAGGACTTCAGGTTGTATGAAGAGTTTGTTGAAAAGGAGTCTAAGGAAATTCCAAAAGCAACTAGCGATGAGGAGTTGGAATACTGGCAGGATTTGGCCAAAGTTGAAGGAGGTTCAGCTGGAAATGATGTAGAAGGTTTAGGAGCGGAAAAGGTTGCTACTGTAGAGGGAGAAGAAGGTTCAGCTGAAAATGTTGCTACTCCAGGGGAAGAAGAAAGTTCAGCTGAAAATATAGAAGGTGCAGAGGAAGAAGAATGTTCAGCTGGAAATATAGAAGGTGCAGGGGAAGAAGAAGGTACATATGTAGGAGGTGCAGCTGAAAGAGAAGGACTGAGGACACGTTCAGTTGTAAAAAGGATAAAAGCAAGGACTGACCGGAAAGAGAAGAAGATGGAAGATTTTGAGGTCCAGATTCCCTTAAAAGAACAAAGGAAGAAGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

43.74

Weight (kDa)

4.39

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000914)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02782 FvH4_2g05173 FvH4_2g07311 FvH4_3g35811 FvH4_4g07821 FvH4_4g11772 FvH4_5g03093 FvH4_5g06861 FvH4_6g03891 FvH4_6g20108 FvH4_7g01271 FvH4_7g07291
rosa_chinensis	RchiOBHm_Chr3g0453231 RchiOBHm_Chr3g0457901 RchiOBHm_Chr5g0042891 RchiOBHm_Chr7g0214111
rosa_laevigata	RLG00000000823 RLG00000000824 RLG00000000825 RLG00000001337 RLG00000001338 RLG00000002470 RLG00000008085 RLG00000008796 RLG00000008797 RLG00000009348 RLG00000009349 RLG00000012957 RLG00000012958 RLG00000014176 RLG00000014689 RLG00000016844 RLG00000017720 RLG00000017721 RLG00000018936 RLG00000018956 RLG00000020590 RLG00000031694 RLG00000031695 RLG00000031696 RLG00000032068 RLG00000032069
rosa_multiflora	Rmu_co8439143.1_g000001 Rmu_sc0000078.1_g000028 Rmu_sc0000087.1_g000024 Rmu_sc0000830.1_g000068 Rmu_sc0000830.1_g000069 Rmu_sc0001136.1_g000011 Rmu_sc0001136.1_g000013 Rmu_sc0001438.1_g000030 Rmu_sc0002698.1_g000012 Rmu_sc0006361.1_g000003 Rmu_sc0006361.1_g000004 Rmu_sc0008598.1_g000014 Rmu_sc0008775.1_g000015 Rmu_sc0015959.1_g000008 Rmu_ssc0000473.1_g000012
rosa_roxburghii	Rroxscaffold_2G00092450 Rroxscaffold_7G00207120
rosa_rugosa	Rorug07G0322400
rosa_samantha	Rh5AG169600 Rh5AG284600 Rh6BG178300 Rh6BG292700
rosa_wichuraiana	Rw7G039800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	324
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	923
AccI	GTMKAC	1 cut(s)	17
AccIII	TCCGGA	1 cut(s)	775
AciI	CCGC	2 cut(s)	725, 923
AclWI	GGATC	2 cut(s)	735, 767
AcoI	YGGCCR	1 cut(s)	873
AcsI	RAATTY	2 cut(s)	278, 825
AcuI	CTGAAG	3 cut(s)	255, 546, 769
AfaI	GTAC	2 cut(s)	444, 1075
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	1115
AgsI	TTSAA	8 cut(s)	211, 284, 452, 596, 697, 709, 809, 884
AjnI	CCWGG	1 cut(s)	979
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	8 cut(s)	233, 413, 632, 896, 962, 1001, 1040, 1094
AluI	AGCT	8 cut(s)	233, 413, 632, 896, 962, 1001, 1040, 1094
Alw21I	GWGCWC	4 cut(s)	295, 367, 391, 487
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	2 cut(s)	735, 767
Aor13HI	TCCGGA	1 cut(s)	775
AoxI	GGCC	2 cut(s)	589, 873
ApeKI	GCWGC	1 cut(s)	1091
ApoI	RAATTY	2 cut(s)	278, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	269, 1183
AsuHPI	GGTGA	2 cut(s)	134, 665
AvaII	GGWCC	2 cut(s)	269, 1183
BaeI	ACNNNNGTAYC	2 cut(s)	1065, 1098
BalI	TGGCCA	1 cut(s)	875
Bbv12I	GWGCWC	4 cut(s)	295, 367, 391, 487
BbvI	GCAGC	1 cut(s)	1103
BccI	CCATC	1 cut(s)	1162
BceAI	ACGGC	1 cut(s)	506
BcgI	CGANNNNNNTGC	6 cut(s)	320, 354, 464, 498, 536, 570
BciT130I	CCWGG	1 cut(s)	981
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	4 cut(s)	414, 438, 534, 840
BfmI	CTRYAG	1 cut(s)	939
BisI	GCNGC	1 cut(s)	1092
BlsI	GCNGC	1 cut(s)	1093
Bme1390I	CCNGG	1 cut(s)	981
Bme18I	GGWCC	2 cut(s)	269, 1183
BmgT120I	GGNCC	2 cut(s)	269, 1183
BmrFI	CCNGG	1 cut(s)	981
BmsI	GCATC	1 cut(s)	712
BpmI	CTGGAG	1 cut(s)	963
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	980
BsaWI	WCCGGW	2 cut(s)	775, 1152
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	469, 866
Bse8I	GATNNNNATC	1 cut(s)	726
BseAI	TCCGGA	1 cut(s)	775
BseBI	CCWGG	1 cut(s)	981
BseDI	CCNNGG	1 cut(s)	980
BseGI	GGATG	3 cut(s)	91, 649, 727
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMII	CTCAG	5 cut(s)	249, 297, 345, 489, 1100
BseNI	ACTGG	2 cut(s)	469, 866
BseRI	GAGGAG	2 cut(s)	750, 863
BseXI	GCAGC	1 cut(s)	1103
BsgI	GTGCAG	3 cut(s)	1038, 1077, 1110
BshFI	GGCC	2 cut(s)	591, 875
BsiHKAI	GWGCWC	4 cut(s)	295, 367, 391, 487
BsiSI	CCGG	2 cut(s)	776, 1153
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	591, 875
Bsp1286I	GDGCHC	4 cut(s)	295, 367, 391, 487
Bsp13I	TCCGGA	1 cut(s)	775
Bsp1407I	TGTACA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	727, 772
BspACI	CCGC	2 cut(s)	725, 923
BspANI	GGCC	2 cut(s)	591, 875
BspCNI	CTCAG	5 cut(s)	250, 298, 346, 490, 1101
BspEI	TCCGGA	1 cut(s)	775
BspPI	GGATC	2 cut(s)	735, 767
BsrBI	CCGCTC	1 cut(s)	923
BsrGI	TGTACA	1 cut(s)	442
BsrI	ACTGG	2 cut(s)	469, 866
BssECI	CCNNGG	1 cut(s)	980
BssMI	GATC	2 cut(s)	727, 772
Bst2UI	CCWGG	1 cut(s)	981
Bst4CI	ACNGT	1 cut(s)	940
Bst6I	CTCTTC	7 cut(s)	231, 327, 543, 567, 681, 741, 792
BstAUI	TGTACA	1 cut(s)	442
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	7 cut(s)	258, 306, 354, 402, 498, 819, 1109
BstF5I	GGATG	3 cut(s)	91, 649, 727
BstHHI	GCGC	1 cut(s)	325
BstKTI	GATC	2 cut(s)	730, 775
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	2 cut(s)	727, 772
BstNI	CCWGG	1 cut(s)	981
BstSCI	CCNGG	1 cut(s)	979
BstSFI	CTRYAG	1 cut(s)	939
BstV1I	GCAGC	1 cut(s)	1103
BsuRI	GGCC	2 cut(s)	591, 875
BtgZI	GCGATG	1 cut(s)	858
BtsCI	GGATG	3 cut(s)	91, 649, 727
Cac8I	GCNNGC	1 cut(s)	327
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	2 cut(s)	269, 1183
Csp6I	GTAC	2 cut(s)	443, 1074
CviAII	CATG	6 cut(s)	170, 296, 392, 607, 743, 1217
CviQI	GTAC	2 cut(s)	443, 1074
DdeI	CTNAG	7 cut(s)	258, 306, 354, 402, 498, 819, 1109
DpnI	GATC	2 cut(s)	729, 774
DpnII	GATC	2 cut(s)	727, 772
EaeI	YGGCCR	1 cut(s)	873
Eam1104I	CTCTTC	7 cut(s)	231, 327, 543, 567, 681, 741, 792
EarI	CTCTTC	7 cut(s)	231, 327, 543, 567, 681, 741, 792
Eco147I	AGGCCT	1 cut(s)	591
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	2 cut(s)	269, 1183
Eco57I	CTGAAG	3 cut(s)	255, 546, 769
EcoRII	CCWGG	1 cut(s)	979
EcoRV	GATATC	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	171
FaeI	CATG	6 cut(s)	173, 299, 395, 610, 746, 1220
FatI	CATG	6 cut(s)	169, 295, 391, 606, 742, 1216
FauNDI	CATATG	1 cut(s)	1078
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	1092
FokI	GGATG	3 cut(s)	98, 656, 734
Fsp4HI	GCNGC	1 cut(s)	1092
FspBI	CTAG	4 cut(s)	414, 438, 534, 840
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	1 cut(s)	1092
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	591, 875
HapII	CCGG	2 cut(s)	776, 1153
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	6 cut(s)	173, 299, 395, 610, 746, 1220
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HinfI	GANTC	3 cut(s)	596, 815, 1189
HpaII	CCGG	2 cut(s)	776, 1153
HphI	GGTGA	2 cut(s)	134, 665
Hpy166II	GTNNAC	3 cut(s)	18, 443, 539
Hpy188I	TCNGA	3 cut(s)	307, 379, 565
Hpy188III	TCNNGA	4 cut(s)	67, 584, 776, 1186
Hpy8I	GTNNAC	3 cut(s)	18, 443, 539
HpyCH4III	ACNGT	1 cut(s)	940
HpyCH4IV	ACGT	1 cut(s)	1117
HpyCH4V	TGCA	5 cut(s)	169, 371, 1019, 1058, 1091
HpyF3I	CTNAG	7 cut(s)	258, 306, 354, 402, 498, 819, 1109
HpySE526I	ACGT	1 cut(s)	1117
Hsp92II	CATG	6 cut(s)	173, 299, 395, 610, 746, 1220
HspAI	GCGC	1 cut(s)	323
Kpn2I	TCCGGA	1 cut(s)	775
Kzo9I	GATC	2 cut(s)	727, 772
LmnI	GCTCC	4 cut(s)	7, 370, 410, 920
Lsp1109I	GCAGC	1 cut(s)	1103
LweI	GCATC	1 cut(s)	712
MaeI	CTAG	4 cut(s)	414, 438, 534, 840
MaeII	ACGT	1 cut(s)	1117
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	729, 774
MbiI	CCGCTC	1 cut(s)	923
MboI	GATC	2 cut(s)	727, 772
MhlI	GDGCHC	4 cut(s)	295, 367, 391, 487
MlsI	TGGCCA	1 cut(s)	875
MluCI	AATT	2 cut(s)	278, 825
MluNI	TGGCCA	1 cut(s)	875
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	1 cut(s)	834
Mox20I	TGGCCA	1 cut(s)	875
Mph1103I	ATGCAT	1 cut(s)	171
MroI	TCCGGA	1 cut(s)	775
MscI	TGGCCA	1 cut(s)	875
MseI	TTAA	2 cut(s)	614, 1196
Msp20I	TGGCCA	1 cut(s)	875
MspA1I	CMGCKG	5 cut(s)	896, 962, 1001, 1040, 1094
MspI	CCGG	2 cut(s)	776, 1153
MspR9I	CCNGG	1 cut(s)	981
MvaI	CCWGG	1 cut(s)	981
NdeI	CATATG	1 cut(s)	1078
NdeII	GATC	2 cut(s)	727, 772
NlaIII	CATG	6 cut(s)	173, 299, 395, 610, 746, 1220
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	324
NsiI	ATGCAT	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	591
PfeI	GAWTC	2 cut(s)	596, 1189
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	1093
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	979
PspPI	GGNCC	2 cut(s)	269, 1183
PvuII	CAGCTG	5 cut(s)	896, 962, 1001, 1040, 1094
RsaI	GTAC	2 cut(s)	444, 1075
RsaNI	GTAC	2 cut(s)	443, 1074
SaqAI	TTAA	2 cut(s)	614, 1196
SatI	GCNGC	1 cut(s)	1092
Sau3AI	GATC	2 cut(s)	727, 772
Sau96I	GGNCC	2 cut(s)	269, 1183
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	1 cut(s)	981
SduI	GDGCHC	4 cut(s)	295, 367, 391, 487
SfaNI	GCATC	1 cut(s)	712
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	2 cut(s)	269, 1183
Sse9I	AATT	2 cut(s)	278, 825
SseBI	AGGCCT	1 cut(s)	591
SsiI	CCGC	2 cut(s)	725, 923
SspMI	CTAG	4 cut(s)	414, 438, 534, 840
StuI	AGGCCT	1 cut(s)	591
StyD4I	CCNGG	1 cut(s)	979
TaaI	ACNGT	1 cut(s)	940
TaiI	ACGT	1 cut(s)	1120
TaqI	TCGA	1 cut(s)	474
TasI	AATT	2 cut(s)	278, 825
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	2 cut(s)	596, 1189
Tru1I	TTAA	2 cut(s)	614, 1196
Tru9I	TTAA	2 cut(s)	614, 1196
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	17, 639, 663, 759, 810
TspGWI	ACGGA	1 cut(s)	698
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	2 cut(s)	269, 1183
XapI	RAATTY	2 cut(s)	278, 825
XmiI	GTMKAC	1 cut(s)	17
XspI	CTAG	4 cut(s)	414, 438, 534, 840
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.